Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0010556

Physical Location & Seq

Genomic Coordinates Forward (+)

2967688 .. 2971135

Gene Structure 3448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G001600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTGTTGTTGGGGACATCCAGAGCTAGAAAAGGGGGCCGACGATATCACTGTCGGAGCAGTGCATAGACAACAAAAAGACAAGGAGGTTTCGGTCCTATCAAACTCCTTCTTTGAGGCTCAGAGCCAGTTGGAGGATTTGAATGTGAAGATCGTTGAGGTATGCAATTGGATTCAGGAGCTTAAGGAGACCATTTTGCTGTTGGATGTGGATTTGGTGGACTCTGCGAGGCAGATTCAGGAGCTCAATGTTACCTGGAGTAATTTGTTGGCTCTTCAACAAAAGCTGAGGCTGATTCTCTATGTCAATCAAGCTCTTTCGGTTCTCAAACTGCTTGTTGCCTCTGCAGATTGTGCTGGAGCTTTGGATGTCACAGACGACCTACAACATTTGCTGGTGTTTGTGTTGAATATAGATATTGGAAGATTATTCTCACTATGTGTTTTTGATCCACCGTCTTCCCTGTGTCCCAAAATCTTTTTGTACAGTCTTTCAATTCCTCAATTGAGTTTTCTTTGTTTATCTAATGCCATACTGTTTGTGTTGAATAGAGATACCAGAAGATTATTCTCACTGAGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

194

Amino Acids

21.85

Weight (kDa)

4.77

Isoelectric Point (pI)

29.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15181 FvH4_4g15480 FvH4_5g17630
rosa_chinensis	RchiOBHm_Chr2g0113461
rosa_laevigata	RLG00000000521 RLG00000000923 RLG00000000924 RLG00000020750
rosa_multiflora	Rmu_co8349827.1_g000001 Rmu_sc0001954.1_g000005 Rmu_sc0007873.1_g000007 Rmu_sc0008698.1_g000012
rosa_roxburghii	Rroxscaffold_4G00301430 Rroxscaffold_4G00329220
rosa_samantha	Rh1BG222200 Rh1DG248900 Rh2CG246400 Rh3BG312200 Rh4AG022700
rosa_wichuraiana	Rw2G029940 Rw4G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	443
AdeI	CACNNNGTG	1 cut(s)	440
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	1 cut(s)	133
AflII	CTTAAG	1 cut(s)	182
AgsI	TTSAA	5 cut(s)	142, 278, 409, 495, 547
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	6 cut(s)	25, 181, 244, 286, 314, 362
AluI	AGCT	6 cut(s)	25, 181, 244, 286, 314, 362
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	443
AoxI	GGCC	1 cut(s)	36
AspS9I	GGNCC	2 cut(s)	36, 94
AvaII	GGWCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	246
BbvCI	CCTCAGC	1 cut(s)	287
BciT130I	CCWGG	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	345
BfrI	CTTAAG	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	36, 94
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	256
BpiI	GAAGAC	1 cut(s)	450
BpmI	CTGGAG	2 cut(s)	277, 378
Bpu10I	CCTNAGC	1 cut(s)	287
BsaI	GGTCTC	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	256
BseGI	GGATG	3 cut(s)	16, 211, 373
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	3 cut(s)	134, 278, 566
BseNI	ACTGG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	246
BslFI	GGGAC	2 cut(s)	27, 453
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	2 cut(s)	27, 453
BsnI	GGCC	1 cut(s)	38
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp1407I	TGTACA	1 cut(s)	483
Bsp143I	GATC	2 cut(s)	150, 448
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	3 cut(s)	133, 279, 567
BspLI	GGNNCC	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	349
BspPI	GGATC	1 cut(s)	443
BspQI	GCTCTTC	1 cut(s)	279
BspTI	CTTAAG	1 cut(s)	182
BspTNI	GGTCTC	1 cut(s)	182
BsrGI	TGTACA	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	127
BssMI	GATC	2 cut(s)	150, 448
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	4 cut(s)	52, 456, 488, 537
Bst6I	CTCTTC	1 cut(s)	279
BstAFI	CTTAAG	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstAUI	TGTACA	1 cut(s)	483
BstDEI	CTNAG	3 cut(s)	120, 287, 575
BstF5I	GGATG	3 cut(s)	16, 211, 373
BstKTI	GATC	2 cut(s)	153, 451
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	2 cut(s)	150, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	254
BstSFI	CTRYAG	1 cut(s)	345
BstV2I	GAAGAC	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	16, 211, 373
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	3 cut(s)	48, 66, 572
Cfr13I	GGNCC	2 cut(s)	36, 94
Csp6I	GTAC	1 cut(s)	484
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	3 cut(s)	120, 287, 575
DpnI	GATC	2 cut(s)	152, 450
DpnII	GATC	2 cut(s)	150, 448
DraIII	CACNNNGTG	1 cut(s)	440
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	254
EcoRV	GATATC	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	246
FaiI	YATR	6 cut(s)	66, 163, 303, 413, 439, 533
FaqI	GGGAC	2 cut(s)	27, 453
FokI	GGATG	3 cut(s)	3, 218, 380
FriOI	GRGCYC	1 cut(s)	246
FspBI	CTAG	1 cut(s)	26
GsuI	CTGGAG	2 cut(s)	277, 378
HaeIII	GGCC	1 cut(s)	38
HinfI	GANTC	4 cut(s)	172, 221, 235, 295
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	3 cut(s)	56, 123, 584
Hpy188III	TCNNGA	3 cut(s)	20, 176, 239
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	4 cut(s)	52, 456, 488, 537
HpyCH4V	TGCA	3 cut(s)	64, 165, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	3 cut(s)	120, 287, 575
Kzo9I	GATC	2 cut(s)	150, 448
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	4 cut(s)	56, 178, 241, 359
MaeI	CTAG	1 cut(s)	26
MaeIII	GTNAC	2 cut(s)	250, 370
MalI	GATC	2 cut(s)	152, 450
MboI	GATC	2 cut(s)	150, 448
MboII	GAAGA	5 cut(s)	160, 266, 435, 450, 573
MfeI	CAATTG	2 cut(s)	166, 503
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	4 cut(s)	166, 262, 495, 503
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	3 cut(s)	34, 111, 183
MnlI	CCTC	8 cut(s)	79, 109, 127, 151, 222, 282, 352, 510
MseI	TTAA	1 cut(s)	183
MspCI	CTTAAG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	256
MunI	CAATTG	2 cut(s)	166, 503
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	2 cut(s)	150, 448
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	172, 235, 295
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	2 cut(s)	36, 94
PstI	CTGCAG	1 cut(s)	349
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SacI	GAGCTC	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	183
Sau3AI	GATC	2 cut(s)	150, 448
Sau96I	GGNCC	2 cut(s)	36, 94
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	4 cut(s)	166, 262, 495, 503
SspMI	CTAG	1 cut(s)	26
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	254
TaaI	ACNGT	4 cut(s)	52, 456, 488, 537
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	4 cut(s)	166, 262, 495, 503
TatI	WGTACW	1 cut(s)	483
TfiI	GAWTC	3 cut(s)	172, 235, 295
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	3 cut(s)	55, 66, 579
TseFI	GTSAC	1 cut(s)	370
Tsp45I	GTSAC	1 cut(s)	370
TspRI	CASTG	3 cut(s)	55, 66, 579
Vha464I	CTTAAG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.