Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8349827.1

Orthogroup ID

OG0010556

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 552

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8349827.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ctcaaccacgtcaagaaggagagcctcgacttcgactccatcggcggccagggcgaagctctcgtcgcttgtctccgcgaagtccccgccctctatttcaaagaggacttcgcattggaagacggcgccactttccggtccgcctgccccttctccggcgtctccgagaacctcgtcctccaggagaagctctcgcattacttggacgtggtggagcttcacctggtgaaggagatctcgctccgatcaaactccttcttcgaggctcagggccagttgcaggacttgaatgtgaagatcgttgagggatgcaatcggattcgggagcttaaggagaccattttgctcttggatgtggatttggttgactctgctaggcagattcaggagctcaatgttaccaggagtaatttgttggctcttcaacagaagctgaggctgattctctatgtcaatcaagctctttcggcgctcaaactggtattccattgcactttgtctcttcggtttagtaatgcatatcgattcttgtatgttgatgacaattgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

183

Amino Acids

20.76

Weight (kDa)

5.24

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15181 FvH4_4g15480 FvH4_5g17630
rosa_chinensis	RchiOBHm_Chr2g0113461
rosa_laevigata	RLG00000000521 RLG00000000923 RLG00000000924 RLG00000020750
rosa_multiflora	Rmu_co8349827.1_g000001 Rmu_sc0001954.1_g000005 Rmu_sc0007873.1_g000007 Rmu_sc0008698.1_g000012
rosa_roxburghii	Rroxscaffold_4G00301430 Rroxscaffold_4G00329220
rosa_samantha	Rh1BG222200 Rh1DG248900 Rh2CG246400 Rh3BG312200 Rh4AG022700
rosa_wichuraiana	Rw2G029940 Rw4G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AccII	CGCG	1 cut(s)	78
AciI	CCGC	4 cut(s)	45, 76, 87, 141
AcoI	YGGCCR	1 cut(s)	46
AcyI	GRCGYC	2 cut(s)	126, 159
AdeI	CACNNNGTG	1 cut(s)	226
AfiI	CCNNNNNNNGG	4 cut(s)	135, 155, 229, 280
AflII	CTTAAG	1 cut(s)	329
AgsI	TTSAA	3 cut(s)	100, 289, 425
AjiI	CACGTC	2 cut(s)	10, 208
AjnI	CCWGG	4 cut(s)	48, 180, 222, 401
AluBI	AGCT	7 cut(s)	59, 190, 217, 328, 391, 433, 461
AluI	AGCT	7 cut(s)	59, 190, 217, 328, 391, 433, 461
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	4 cut(s)	77, 166, 329, 504
AlwNI	CAGNNNCTG	1 cut(s)	433
AoxI	GGCC	2 cut(s)	46, 271
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
AspLEI	GCGC	2 cut(s)	128, 472
AspS9I	GGNCC	2 cut(s)	138, 271
AsuHPI	GGTGA	2 cut(s)	212, 238
AvaII	GGWCC	1 cut(s)	138
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	393
BbvCI	CCTCAGC	1 cut(s)	434
BccI	CCATC	1 cut(s)	47
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	4 cut(s)	50, 182, 224, 403
BcoDI	GTCTC	4 cut(s)	77, 166, 329, 504
BfaI	CTAG	1 cut(s)	375
BfoI	RGCGCY	2 cut(s)	129, 473
BfrI	CTTAAG	1 cut(s)	329
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
Bme1390I	CCNGG	4 cut(s)	50, 182, 224, 403
Bme18I	GGWCC	1 cut(s)	138
BmgBI	CACGTC	2 cut(s)	10, 208
BmgT120I	GGNCC	2 cut(s)	138, 271
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	4 cut(s)	50, 182, 224, 403
BmsI	GCATC	1 cut(s)	299
BpiI	GAAGAC	1 cut(s)	126
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	1 cut(s)	164
Bpu10I	CCTNAGC	2 cut(s)	267, 434
Bsa29I	ATCGAT	1 cut(s)	523
BsaHI	GRCGYC	2 cut(s)	126, 159
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	49
BsaWI	WCCGGW	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	4 cut(s)	135, 155, 229, 280
Bse1I	ACTGG	2 cut(s)	274, 483
Bse3DI	GCAATG	1 cut(s)	487
BseBI	CCWGG	4 cut(s)	50, 182, 224, 403
BseCI	ATCGAT	1 cut(s)	523
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	2 cut(s)	314, 358
BseLI	CCNNNNNNNGG	4 cut(s)	135, 155, 229, 280
BseMI	GCAATG	1 cut(s)	487
BseMII	CTCAG	2 cut(s)	281, 425
BseNI	ACTGG	2 cut(s)	274, 483
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	48, 273
BshNI	GGYRCC	1 cut(s)	125
BshVI	ATCGAT	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	393
BsiSI	CCGG	2 cut(s)	136, 156
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	4 cut(s)	135, 155, 229, 280
BsmAI	GTCTC	4 cut(s)	77, 166, 329, 504
BsmBI	CGTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	48, 273
Bso31I	GGTCTC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	3 cut(s)	234, 245, 297
BspACI	CCGC	4 cut(s)	45, 76, 87, 141
BspANI	GGCC	2 cut(s)	48, 273
BspCNI	CTCAG	2 cut(s)	280, 426
BspDI	ATCGAT	1 cut(s)	523
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	127
BspQI	GCTCTTC	1 cut(s)	426
BspT107I	GGYRCC	1 cut(s)	125
BspTI	CTTAAG	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	487
BsrI	ACTGG	2 cut(s)	274, 483
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	3 cut(s)	234, 245, 297
BssNI	GRCGYC	2 cut(s)	126, 159
Bst2UI	CCWGG	4 cut(s)	50, 182, 224, 403
Bst6I	CTCTTC	2 cut(s)	426, 507
BstACI	GRCGYC	2 cut(s)	126, 159
BstAFI	CTTAAG	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	267, 434
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	2 cut(s)	314, 358
BstFNI	CGCG	1 cut(s)	78
BstH2I	RGCGCY	2 cut(s)	129, 473
BstHHI	GCGC	2 cut(s)	128, 472
BstKTI	GATC	3 cut(s)	237, 248, 300
BstMAI	GTCTC	4 cut(s)	77, 166, 329, 504
BstMBI	GATC	3 cut(s)	234, 245, 297
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 65, 467
BstNI	CCWGG	4 cut(s)	50, 182, 224, 403
BstSCI	CCNGG	4 cut(s)	48, 180, 222, 401
BstUI	CGCG	1 cut(s)	78
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
Bsu15I	ATCGAT	1 cut(s)	523
BsuRI	GGCC	2 cut(s)	48, 273
BsuTUI	ATCGAT	1 cut(s)	523
BtrI	CACGTC	2 cut(s)	10, 208
BtsCI	GGATG	2 cut(s)	314, 358
Cac8I	GCNNGC	1 cut(s)	145
CaiI	CAGNNNCTG	1 cut(s)	433
CfoI	GCGC	2 cut(s)	128, 472
Cfr13I	GGNCC	2 cut(s)	138, 271
ClaI	ATCGAT	1 cut(s)	523
CpoI	CGGWCCG	1 cut(s)	138
CseI	GACGC	1 cut(s)	148
CsiI	ACCWGGT	1 cut(s)	222
CspI	CGGWCCG	1 cut(s)	138
DdeI	CTNAG	2 cut(s)	267, 434
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	3 cut(s)	236, 247, 299
DpnII	GATC	3 cut(s)	234, 245, 297
DraIII	CACNNNGTG	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	426, 507
EarI	CTCTTC	2 cut(s)	426, 507
EciI	GGCGGA	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	391
EcoICRI	GAGCTC	1 cut(s)	391
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoRII	CCWGG	4 cut(s)	48, 180, 222, 401
EcoT22I	ATGCAT	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	393
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
Esp3I	CGTCTC	1 cut(s)	166
FaiI	YATR	3 cut(s)	450, 520, 534
FaqI	GGGAC	1 cut(s)	68
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	1 cut(s)	46
FokI	GGATG	2 cut(s)	321, 365
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	1 cut(s)	46
FspBI	CTAG	1 cut(s)	375
GlaI	GCGC	2 cut(s)	127, 471
GluI	GCNGC	1 cut(s)	46
GsuI	CTGGAG	1 cut(s)	164
HaeII	RGCGCY	2 cut(s)	129, 473
HaeIII	GGCC	2 cut(s)	48, 273
HapII	CCGG	2 cut(s)	136, 156
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	2 cut(s)	128, 472
Hin1I	GRCGYC	2 cut(s)	126, 159
Hin6I	GCGC	2 cut(s)	126, 470
HinP1I	GCGC	2 cut(s)	126, 470
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	6 cut(s)	35, 319, 368, 382, 442, 525
HpaII	CCGG	2 cut(s)	136, 156
HphI	GGTGA	2 cut(s)	212, 238
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	3 cut(s)	166, 245, 318
Hpy188III	TCNNGA	3 cut(s)	13, 323, 386
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	4 cut(s)	10, 160, 223, 265
HpyCH4IV	ACGT	2 cut(s)	9, 207
HpyCH4V	TGCA	4 cut(s)	280, 312, 492, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 65, 467
HpyF3I	CTNAG	2 cut(s)	267, 434
HpySE526I	ACGT	2 cut(s)	9, 207
Hsp92I	GRCGYC	2 cut(s)	126, 159
HspAI	GCGC	2 cut(s)	126, 470
KasI	GGCGCC	1 cut(s)	125
Kzo9I	GATC	3 cut(s)	234, 245, 297
LguI	GCTCTTC	1 cut(s)	426
LmnI	GCTCC	4 cut(s)	214, 246, 325, 388
LweI	GCATC	1 cut(s)	299
MabI	ACCWGGT	1 cut(s)	222
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	2 cut(s)	9, 207
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	3 cut(s)	236, 247, 299
MboI	GATC	3 cut(s)	234, 245, 297
MboII	GAAGA	5 cut(s)	131, 250, 307, 413, 494
MfeI	CAATTG	1 cut(s)	544
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	2 cut(s)	409, 544
Mly113I	GGCGCC	1 cut(s)	126
MlyI	GAGTC	2 cut(s)	29, 362
MnlI	CCTC	8 cut(s)	35, 97, 101, 182, 188, 256, 298, 429
Mph1103I	ATGCAT	1 cut(s)	520
MseI	TTAA	1 cut(s)	330
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	2 cut(s)	136, 156
MspR9I	CCNGG	4 cut(s)	50, 182, 224, 403
MunI	CAATTG	1 cut(s)	544
MvaI	CCWGG	4 cut(s)	50, 182, 224, 403
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	51, 65, 467
NarI	GGCGCC	1 cut(s)	126
NdeII	GATC	3 cut(s)	234, 245, 297
NlaIV	GGNNCC	1 cut(s)	127
NsiI	ATGCAT	1 cut(s)	520
PciSI	GCTCTTC	1 cut(s)	426
PfeI	GAWTC	4 cut(s)	319, 382, 442, 525
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	47
PleI	GAGTC	2 cut(s)	29, 362
PluTI	GGCGCC	1 cut(s)	129
PpsI	GAGTC	2 cut(s)	29, 362
Psp124BI	GAGCTC	1 cut(s)	393
Psp6I	CCWGG	4 cut(s)	48, 180, 222, 401
PspGI	CCWGG	4 cut(s)	48, 180, 222, 401
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	2 cut(s)	138, 271
PstNI	CAGNNNCTG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	234
Rsr2I	CGGWCCG	1 cut(s)	138
RsrII	CGGWCCG	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	393
SapI	GCTCTTC	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	46
Sau3AI	GATC	3 cut(s)	234, 245, 297
Sau96I	GGNCC	2 cut(s)	138, 271
SchI	GAGTC	2 cut(s)	29, 362
ScrFI	CCNGG	4 cut(s)	50, 182, 224, 403
SduI	GDGCHC	1 cut(s)	393
SexAI	ACCWGGT	1 cut(s)	222
SfaNI	GCATC	1 cut(s)	299
SfoI	GGCGCC	1 cut(s)	127
SinI	GGWCC	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	2 cut(s)	409, 544
SsiI	CCGC	4 cut(s)	45, 76, 87, 141
SspDI	GGCGCC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	375
SstI	GAGCTC	1 cut(s)	393
StyD4I	CCNGG	4 cut(s)	48, 180, 222, 401
TaiI	ACGT	2 cut(s)	12, 210
TaqI	TCGA	4 cut(s)	27, 33, 261, 523
TasI	AATT	2 cut(s)	409, 544
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	4 cut(s)	319, 382, 442, 525
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	138
XagI	CCTNNNNNAGG	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XspI	CTAG	1 cut(s)	375
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.