Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010556

Physical Location & Seq

Genomic Coordinates Forward (+)

48667293 .. 48672258

Gene Structure 4966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G029940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGGACTTTTATTAAGACTAGGTGAATATGAAATTCTAGCCTCGACTTCGACTCCATCGGCGGGCAGGGCGAAGCTCTCGTCCCTTGTCTCCAGGAAGTCCCTGCCCTCTATTTCAAAGAGGGACTTCGCATTGGAAGACGGCGCCACCTTCCGCTCCGCCTACCCCTTCTCCGGCGTCACCGAGAACCTCGTCCTCCAGGAGAAGCTCTCGCATTATTTGGTACTTCAATTTCTTGTACTCTCACAGGTGGAGCTTCACCTGGTGAAGGAGGTTTCGGTCCGATCAAACTCCTTCTTTGAGGCTCAGAGCCAGTTGGAGGATTTGAATGTGAAGATCGTTGAGGTATGCAATCGGATTCAGGAGCTTAAGGAGACCATTTTGCAGTTGGATGTGGATTTGGTGGACTCTGCGAGGCAGATTCAGGAGCTCAATGTTACCAGGAGTAATTTGTTGGCTCTTCAACAGAAGCTGAGGCTGATTCTCTATGTCAATCAAGCTCTTTCGGTTCTCAAACTGCTTGTTGCCTCTGCAGATTGTGCTGGAGCTTTGGATGTCACAGACGACCTACAACATTTGCTGGTATTTTTCTTTTACTGTTTCATTGTTTTGTTTTGTTGGAAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

209

Amino Acids

23.5

Weight (kDa)

5.66

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

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Orthologous Genes (Group: OG0010556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15181 FvH4_4g15480 FvH4_5g17630
rosa_chinensis	RchiOBHm_Chr2g0113461
rosa_laevigata	RLG00000000521 RLG00000000923 RLG00000000924 RLG00000020750
rosa_multiflora	Rmu_co8349827.1_g000001 Rmu_sc0001954.1_g000005 Rmu_sc0007873.1_g000007 Rmu_sc0008698.1_g000012
rosa_roxburghii	Rroxscaffold_4G00301430 Rroxscaffold_4G00329220
rosa_samantha	Rh1BG222200 Rh1DG248900 Rh2CG246400 Rh3BG312200 Rh4AG022700
rosa_wichuraiana	Rw2G029940 Rw4G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AccBSI	CCGCTC	1 cut(s)	156
AciI	CCGC	3 cut(s)	62, 154, 159
AcsI	RAATTY	1 cut(s)	33
AcyI	GRCGYC	2 cut(s)	144, 177
AdeI	CACNNNGTG	1 cut(s)	265
AfaI	GTAC	2 cut(s)	225, 240
AfiI	CCNNNNNNNGG	4 cut(s)	62, 173, 268, 319
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	4 cut(s)	117, 230, 328, 464
AjnI	CCWGG	4 cut(s)	92, 198, 261, 440
AluBI	AGCT	9 cut(s)	76, 208, 256, 367, 430, 472, 500, 548, 627
AluI	AGCT	9 cut(s)	76, 208, 256, 367, 430, 472, 500, 548, 627
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	2 cut(s)	94, 368
AlwNI	CAGNNNCTG	1 cut(s)	472
ApoI	RAATTY	1 cut(s)	33
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	4 cut(s)	35, 172, 251, 277
AvaII	GGWCC	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	432
BbvCI	CCTCAGC	1 cut(s)	473
BccI	CCATC	1 cut(s)	64
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	4 cut(s)	94, 200, 263, 442
BcoDI	GTCTC	2 cut(s)	94, 368
BfaI	CTAG	3 cut(s)	20, 38, 628
BfmI	CTRYAG	1 cut(s)	531
BfoI	RGCGCY	1 cut(s)	147
BfrI	CTTAAG	1 cut(s)	368
Bme1390I	CCNGG	4 cut(s)	94, 200, 263, 442
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	4 cut(s)	94, 200, 263, 442
BpiI	GAAGAC	1 cut(s)	144
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpmI	CTGGAG	3 cut(s)	76, 182, 564
Bpu10I	CCTNAGC	1 cut(s)	473
BsaHI	GRCGYC	2 cut(s)	144, 177
BsaI	GGTCTC	1 cut(s)	368
BsaXI	ACNNNNNCTCC	4 cut(s)	37, 67, 155, 185
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 173, 268, 319
Bse1I	ACTGG	1 cut(s)	313
BseBI	CCWGG	4 cut(s)	94, 200, 263, 442
BseGI	GGATG	2 cut(s)	397, 559
BseLI	CCNNNNNNNGG	4 cut(s)	62, 173, 268, 319
BseMII	CTCAG	2 cut(s)	320, 464
BseNI	ACTGG	1 cut(s)	313
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	432
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	4 cut(s)	18, 67, 85, 137
BslI	CCNNNNNNNGG	4 cut(s)	62, 173, 268, 319
BsmAI	GTCTC	2 cut(s)	94, 368
BsmFI	GGGAC	4 cut(s)	18, 67, 85, 137
Bso31I	GGTCTC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	284, 336
BspACI	CCGC	3 cut(s)	62, 154, 159
BspCNI	CTCAG	2 cut(s)	319, 465
BspLI	GGNNCC	1 cut(s)	145
BspMAI	CTGCAG	1 cut(s)	535
BspQI	GCTCTTC	1 cut(s)	465
BspT107I	GGYRCC	1 cut(s)	143
BspTI	CTTAAG	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	368
BsrBI	CCGCTC	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	313
BssMI	GATC	2 cut(s)	284, 336
BssNI	GRCGYC	2 cut(s)	144, 177
Bst2UI	CCWGG	4 cut(s)	94, 200, 263, 442
Bst4CI	ACNGT	1 cut(s)	599
Bst6I	CTCTTC	1 cut(s)	465
BstACI	GRCGYC	2 cut(s)	144, 177
BstAFI	CTTAAG	1 cut(s)	368
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	306, 473
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	397, 559
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	287, 339
BstMAI	GTCTC	2 cut(s)	94, 368
BstMBI	GATC	2 cut(s)	284, 336
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 539
BstNI	CCWGG	4 cut(s)	94, 200, 263, 442
BstSCI	CCNGG	4 cut(s)	92, 198, 261, 440
BstSFI	CTRYAG	1 cut(s)	531
BstV2I	GAAGAC	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	397, 559
Cac8I	GCNNGC	1 cut(s)	64
CaiI	CAGNNNCTG	1 cut(s)	472
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	280
CpoI	CGGWCCG	1 cut(s)	280
CseI	GACGC	1 cut(s)	166
CsiI	ACCWGGT	1 cut(s)	261
Csp6I	GTAC	2 cut(s)	224, 239
CspI	CGGWCCG	1 cut(s)	280
CviQI	GTAC	2 cut(s)	224, 239
DdeI	CTNAG	2 cut(s)	306, 473
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	2 cut(s)	286, 338
DpnII	GATC	2 cut(s)	284, 336
DraIII	CACNNNGTG	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
EciI	GGCGGA	1 cut(s)	148
Ecl136II	GAGCTC	1 cut(s)	430
Eco24I	GRGCYC	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	280
Eco53kI	GAGCTC	1 cut(s)	430
EcoICRI	GAGCTC	1 cut(s)	430
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoRII	CCWGG	4 cut(s)	92, 198, 261, 440
EcoT38I	GRGCYC	1 cut(s)	432
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
FaiI	YATR	3 cut(s)	30, 349, 489
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	4 cut(s)	18, 67, 85, 137
FauI	CCCGC	1 cut(s)	55
FokI	GGATG	2 cut(s)	404, 566
FriOI	GRGCYC	1 cut(s)	432
FspBI	CTAG	3 cut(s)	20, 38, 628
GlaI	GCGC	1 cut(s)	145
GsuI	CTGGAG	3 cut(s)	76, 182, 564
HaeII	RGCGCY	1 cut(s)	147
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	2 cut(s)	144, 177
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	5 cut(s)	52, 358, 407, 421, 481
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	4 cut(s)	35, 172, 251, 277
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	3 cut(s)	284, 309, 357
Hpy188III	TCNNGA	2 cut(s)	362, 425
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	4 cut(s)	160, 178, 262, 304
HpyCH4III	ACNGT	1 cut(s)	599
HpyCH4V	TGCA	3 cut(s)	351, 385, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 539
HpyF3I	CTNAG	2 cut(s)	306, 473
Hsp92I	GRCGYC	2 cut(s)	144, 177
HspAI	GCGC	1 cut(s)	144
KasI	GGCGCC	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	284, 336
LguI	GCTCTTC	1 cut(s)	465
LmnI	GCTCC	5 cut(s)	161, 253, 364, 427, 545
MabI	ACCWGGT	1 cut(s)	261
MaeI	CTAG	3 cut(s)	20, 38, 628
MaeIII	GTNAC	3 cut(s)	178, 436, 556
MalI	GATC	2 cut(s)	286, 338
MbiI	CCGCTC	1 cut(s)	156
MboI	GATC	2 cut(s)	284, 336
MboII	GAAGA	3 cut(s)	149, 346, 452
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	3 cut(s)	33, 230, 448
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	2 cut(s)	46, 401
MmeI	TCCRAC	3 cut(s)	297, 369, 599
MseI	TTAA	2 cut(s)	14, 369
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	4 cut(s)	94, 200, 263, 442
MvaI	CCWGG	4 cut(s)	94, 200, 263, 442
MwoI	GCNNNNNNNGC	2 cut(s)	68, 539
NarI	GGCGCC	1 cut(s)	144
NdeII	GATC	2 cut(s)	284, 336
NlaIV	GGNNCC	1 cut(s)	145
NmuCI	GTSAC	2 cut(s)	178, 556
PciSI	GCTCTTC	1 cut(s)	465
PfeI	GAWTC	3 cut(s)	358, 421, 481
PfoI	TCCNGGA	2 cut(s)	92, 198
PleI	GAGTC	2 cut(s)	46, 401
PluTI	GGCGCC	1 cut(s)	147
PpsI	GAGTC	2 cut(s)	46, 401
Psp124BI	GAGCTC	1 cut(s)	432
Psp6I	CCWGG	4 cut(s)	92, 198, 261, 440
PspGI	CCWGG	4 cut(s)	92, 198, 261, 440
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	535
PstNI	CAGNNNCTG	1 cut(s)	472
RsaI	GTAC	2 cut(s)	225, 240
RsaNI	GTAC	2 cut(s)	224, 239
Rsr2I	CGGWCCG	1 cut(s)	280
RsrII	CGGWCCG	1 cut(s)	280
SacI	GAGCTC	1 cut(s)	432
SapI	GCTCTTC	1 cut(s)	465
SaqAI	TTAA	2 cut(s)	14, 369
Sau3AI	GATC	2 cut(s)	284, 336
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	2 cut(s)	46, 401
ScrFI	CCNGG	4 cut(s)	94, 200, 263, 442
SduI	GDGCHC	1 cut(s)	432
SexAI	ACCWGGT	1 cut(s)	261
SfcI	CTRYAG	1 cut(s)	531
SfoI	GGCGCC	1 cut(s)	145
SinI	GGWCC	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	3 cut(s)	33, 230, 448
SsiI	CCGC	3 cut(s)	62, 154, 159
SspDI	GGCGCC	1 cut(s)	143
SspMI	CTAG	3 cut(s)	20, 38, 628
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	4 cut(s)	92, 198, 261, 440
TaaI	ACNGT	1 cut(s)	599
TaqI	TCGA	2 cut(s)	44, 50
TaqII	GACCGA	1 cut(s)	268
TasI	AATT	3 cut(s)	33, 230, 448
TatI	WGTACW	1 cut(s)	238
TfiI	GAWTC	3 cut(s)	358, 421, 481
Tru1I	TTAA	2 cut(s)	14, 369
Tru9I	TTAA	2 cut(s)	14, 369
TseFI	GTSAC	2 cut(s)	178, 556
Tsp45I	GTSAC	2 cut(s)	178, 556
TspDTI	ATGAA	2 cut(s)	45, 592
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	280
XagI	CCTNNNNNAGG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	33
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XspI	CTAG	3 cut(s)	20, 38, 628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.