Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010556

Physical Location & Seq

Genomic Coordinates Reverse (-)

68291364 .. 68296468

Gene Structure 5105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020750

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGATAAAGAATCTATGCTACTACTGCCGGCACTCATATGGCAATGTGGCATAAAGGACAGCAATAACATCTCCAAGAGCCTCGACTTTGACTCCATCGGCGGCCAAGGCGAAGCTCTCGTTGCTTGTCTCCGGGAAGTCCCCGCCCTCTATTTCAAAGAGGACTTCGCATTGGAAGACTGCGCCACCTTCTGCTCCACCTACCCCTTCTCCTACGTCTCCGAGAACCTCGTCCTCCAGGAGAAGCTCTCGCATTACTTGGACGTGCTGGAGCTTCACTTGGTGAAGGAGATCTCGCTCCGATCAAACTCCTTCTTTGAGGCTCAGGGCCAGTTGCAGGACTTGAATGTGAAGATCGTTGAGGGATGCAATCGGATTCGGGAGCTTAAGGAGACCATTTTGCTGTTGGATGTGGATTTGGTGGACTCTGCGAGGAAGTCGAAGTCCACCCCACCCCCGCCGTCTGTCACATTCTCATCGCCGTCGTCGGTTTACACTTCTTCCAACAAGCTGCCTGCATCGATGCCGTCGTTTTGTAATTTGTACAGCCCGAGAATCTTCAAAAAGGCCGGAATCAAGTTGAAGAACAAAAACTCCTCCGCCGTCGGATCCGTCAATACATTCTTCATCCTCGTCCCAACGTTTTTCCTGGACATCTTGCAGCAGAGAAGGAAGAACTGCTCGCCTCTGGCTTCCTCTAGATCGGCGGCGGCGGCGGCAGCAATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

244

Amino Acids

26.84

Weight (kDa)

7.52

Isoelectric Point (pI)

57.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15181 FvH4_4g15480 FvH4_5g17630
rosa_chinensis	RchiOBHm_Chr2g0113461
rosa_laevigata	RLG00000000521 RLG00000000923 RLG00000000924 RLG00000020750
rosa_multiflora	Rmu_co8349827.1_g000001 Rmu_sc0001954.1_g000005 Rmu_sc0007873.1_g000007 Rmu_sc0008698.1_g000012
rosa_roxburghii	Rroxscaffold_4G00301430 Rroxscaffold_4G00329220
rosa_samantha	Rh1BG222200 Rh1DG248900 Rh2CG246400 Rh3BG312200 Rh4AG022700
rosa_wichuraiana	Rw2G029940 Rw4G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	102, 144, 458, 600, 707, 710, 713, 716
AclI	AACGTT	1 cut(s)	641
AclWI	GGATC	2 cut(s)	603, 616
AcoI	YGGCCR	1 cut(s)	103
AdeI	CACNNNGTG	1 cut(s)	283
AfaI	GTAC	1 cut(s)	545
AfiI	CCNNNNNNNGG	1 cut(s)	337
AflII	CTTAAG	1 cut(s)	386
AgsI	TTSAA	4 cut(s)	157, 346, 562, 583
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	2 cut(s)	237, 648
AloI	GAACNNNNNNTCC	2 cut(s)	578, 610
AluBI	AGCT	5 cut(s)	116, 247, 274, 385, 511
AluI	AGCT	5 cut(s)	116, 247, 274, 385, 511
Alw26I	GTCTC	3 cut(s)	134, 223, 386
AlwI	GGATC	2 cut(s)	603, 616
Ama87I	CYCGRG	1 cut(s)	550
AoxI	GGCC	3 cut(s)	103, 328, 567
ApeKI	GCWGC	3 cut(s)	511, 661, 719
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	328
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	295
AvaI	CYCGRG	1 cut(s)	550
BamHI	GGATCC	1 cut(s)	608
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	498, 673
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	4 cut(s)	445, 466, 511, 587
BciT130I	CCWGG	2 cut(s)	239, 650
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	3 cut(s)	134, 223, 386
BfaI	CTAG	1 cut(s)	699
BfrI	CTTAAG	1 cut(s)	386
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	8 cut(s)	103, 512, 662, 708, 711, 714, 717, 720
BlsI	GCNGC	8 cut(s)	104, 513, 663, 709, 712, 715, 718, 721
Bme1390I	CCNGG	3 cut(s)	134, 239, 650
BmeT110I	CYCGRG	1 cut(s)	550
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	610
BmrFI	CCNGG	3 cut(s)	134, 239, 650
BmsI	GCATC	3 cut(s)	356, 513, 527
BpiI	GAAGAC	1 cut(s)	183
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BpmI	CTGGAG	2 cut(s)	221, 290
Bpu10I	CCTNAGC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	521
BsaI	GGTCTC	1 cut(s)	386
BsaJI	CCNNGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	6 cut(s)	77, 107, 194, 224, 578, 608
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	331
Bse3DI	GCAATG	1 cut(s)	50
BseBI	CCWGG	2 cut(s)	239, 650
BseCI	ATCGAT	1 cut(s)	521
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	3 cut(s)	371, 415, 627
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMI	GCAATG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	586
BseXI	GCAGC	2 cut(s)	498, 673
BshFI	GGCC	3 cut(s)	105, 330, 569
BshVI	ATCGAT	1 cut(s)	521
BsiHKCI	CYCGRG	1 cut(s)	550
BsiSI	CCGG	3 cut(s)	29, 133, 570
BslFI	GGGAC	2 cut(s)	125, 620
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	3 cut(s)	134, 223, 386
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	2 cut(s)	125, 620
BsnI	GGCC	3 cut(s)	105, 330, 569
Bso31I	GGTCTC	1 cut(s)	386
BsoBI	CYCGRG	1 cut(s)	550
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	5 cut(s)	291, 302, 354, 608, 701
BspACI	CCGC	8 cut(s)	102, 144, 458, 600, 707, 710, 713, 716
BspANI	GGCC	3 cut(s)	105, 330, 569
BspCNI	CTCAG	1 cut(s)	337
BspDI	ATCGAT	1 cut(s)	521
BspLI	GGNNCC	1 cut(s)	610
BspPI	GGATC	2 cut(s)	603, 616
BspTI	CTTAAG	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	28
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	1 cut(s)	331
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	5 cut(s)	291, 302, 354, 608, 701
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	2 cut(s)	239, 650
BstAFI	CTTAAG	1 cut(s)	386
BstAUI	TGTACA	1 cut(s)	543
BstC8I	GCNNGC	3 cut(s)	30, 516, 683
BstDEI	CTNAG	1 cut(s)	324
BstF5I	GGATG	3 cut(s)	371, 415, 627
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	5 cut(s)	294, 305, 357, 611, 704
BstMAI	GTCTC	3 cut(s)	134, 223, 386
BstMBI	GATC	5 cut(s)	291, 302, 354, 608, 701
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 108, 122, 713, 716, 719
BstNI	CCWGG	2 cut(s)	239, 650
BstSCI	CCNGG	3 cut(s)	132, 237, 648
BstV1I	GCAGC	2 cut(s)	498, 673
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	2 cut(s)	291, 608
BstYI	RGATCY	2 cut(s)	291, 608
Bsu15I	ATCGAT	1 cut(s)	521
BsuRI	GGCC	3 cut(s)	105, 330, 569
BsuTUI	ATCGAT	1 cut(s)	521
BtgZI	GCGATG	1 cut(s)	462
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	371, 415, 627
Cac8I	GCNNGC	3 cut(s)	30, 516, 683
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	328
ClaI	ATCGAT	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	544
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	5 cut(s)	293, 304, 356, 610, 703
DpnII	GATC	5 cut(s)	291, 302, 354, 608, 701
DraIII	CACNNNGTG	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	589
Eco130I	CCWWGG	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	550
EcoRII	CCWGG	2 cut(s)	237, 648
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
Esp3I	CGTCTC	1 cut(s)	223
FaiI	YATR	4 cut(s)	17, 38, 40, 53
FaqI	GGGAC	2 cut(s)	125, 620
FauI	CCCGC	2 cut(s)	151, 465
FauNDI	CATATG	1 cut(s)	38
Fnu4HI	GCNGC	8 cut(s)	103, 512, 662, 708, 711, 714, 717, 720
FokI	GGATG	3 cut(s)	378, 422, 614
Fsp4HI	GCNGC	8 cut(s)	103, 512, 662, 708, 711, 714, 717, 720
FspBI	CTAG	1 cut(s)	699
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	8 cut(s)	103, 512, 662, 708, 711, 714, 717, 720
GsuI	CTGGAG	2 cut(s)	221, 290
HaeIII	GGCC	3 cut(s)	105, 330, 569
HapII	CCGG	3 cut(s)	29, 133, 570
HhaI	GCGC	1 cut(s)	185
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	6 cut(s)	11, 92, 376, 425, 555, 573
HpaII	CCGG	3 cut(s)	29, 133, 570
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	3 cut(s)	424, 447, 493
Hpy188I	TCNGA	4 cut(s)	223, 302, 375, 608
Hpy188III	TCNNGA	2 cut(s)	380, 699
Hpy8I	GTNNAC	3 cut(s)	424, 447, 493
Hpy99I	CGWCG	4 cut(s)	487, 490, 532, 608
HpyAV	CCTTC	5 cut(s)	199, 217, 280, 322, 663
HpyCH4IV	ACGT	3 cut(s)	216, 264, 641
HpyCH4V	TGCA	4 cut(s)	337, 369, 518, 661
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 108, 122, 713, 716, 719
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	3 cut(s)	216, 264, 641
HspAI	GCGC	1 cut(s)	183
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Kzo9I	GATC	5 cut(s)	291, 302, 354, 608, 701
LmnI	GCTCC	4 cut(s)	200, 271, 303, 382
Lsp1109I	GCAGC	2 cut(s)	498, 673
LweI	GCATC	3 cut(s)	356, 513, 527
MaeI	CTAG	1 cut(s)	699
MaeII	ACGT	3 cut(s)	216, 264, 641
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	5 cut(s)	293, 304, 356, 610, 703
MboI	GATC	5 cut(s)	291, 302, 354, 608, 701
MboII	GAAGA	7 cut(s)	188, 364, 492, 550, 595, 616, 685
MflI	RGATCY	2 cut(s)	291, 608
MluCI	AATT	2 cut(s)	538, 723
MlyI	GAGTC	2 cut(s)	86, 419
MmeI	TCCRAC	3 cut(s)	387, 528, 586
MroNI	GCCGGC	1 cut(s)	28
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	1 cut(s)	37
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	3 cut(s)	29, 133, 570
MspR9I	CCNGG	3 cut(s)	134, 239, 650
MvaI	CCWGG	2 cut(s)	239, 650
MwoI	GCNNNNNNNGC	6 cut(s)	25, 108, 122, 713, 716, 719
NaeI	GCCGGC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	134
NdeI	CATATG	1 cut(s)	38
NdeII	GATC	5 cut(s)	291, 302, 354, 608, 701
NgoMIV	GCCGGC	1 cut(s)	28
NlaIV	GGNNCC	1 cut(s)	610
NmuCI	GTSAC	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	1 cut(s)	527
PdiI	GCCGGC	1 cut(s)	30
PfeI	GAWTC	4 cut(s)	11, 376, 555, 573
PfoI	TCCNGGA	3 cut(s)	132, 237, 648
PkrI	GCNGC	8 cut(s)	104, 513, 663, 709, 712, 715, 718, 721
PleI	GAGTC	2 cut(s)	86, 419
PpsI	GAGTC	2 cut(s)	86, 419
Psp1406I	AACGTT	1 cut(s)	641
Psp6I	CCWGG	2 cut(s)	237, 648
PspGI	CCWGG	2 cut(s)	237, 648
PspN4I	GGNNCC	1 cut(s)	610
PspPI	GGNCC	1 cut(s)	328
PsuI	RGATCY	2 cut(s)	291, 608
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
RseI	CAYNNNNRTG	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	8 cut(s)	103, 512, 662, 708, 711, 714, 717, 720
Sau3AI	GATC	5 cut(s)	291, 302, 354, 608, 701
Sau96I	GGNCC	1 cut(s)	328
SchI	GAGTC	2 cut(s)	86, 419
ScrFI	CCNGG	3 cut(s)	134, 239, 650
SfaNI	GCATC	3 cut(s)	356, 513, 527
SmiMI	CAYNNNNRTG	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	538, 723
SsiI	CCGC	8 cut(s)	102, 144, 458, 600, 707, 710, 713, 716
SspMI	CTAG	1 cut(s)	699
StyD4I	CCNGG	3 cut(s)	132, 237, 648
StyI	CCWWGG	1 cut(s)	106
TaiI	ACGT	3 cut(s)	219, 267, 644
TaqI	TCGA	3 cut(s)	84, 440, 521
TasI	AATT	2 cut(s)	538, 723
TatI	WGTACW	1 cut(s)	543
TauI	GCSGC	5 cut(s)	105, 710, 713, 716, 719
TfiI	GAWTC	4 cut(s)	11, 376, 555, 573
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	3 cut(s)	511, 661, 719
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	1 cut(s)	616
TspGWI	ACGGA	1 cut(s)	601
Vha464I	CTTAAG	1 cut(s)	386
XbaI	TCTAGA	1 cut(s)	698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XspI	CTAG	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.