Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008698.1

Orthogroup ID

OG0010556

Physical Location & Seq

Genomic Coordinates Forward (+)

38510 .. 39000

Gene Structure 491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008698.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgggcttcgagctcgagcaaattacgattcggtttcgatatcctggattacaggtttgtttctgcctcgacttcgactccatcggcggccagggcgaagctctcgtcgcttgtctccgggaagtccccgccctctatttcaaagaggacttcgcattggaagacggcgccaccttccgcttcgcctgccccttctccggcgtagccgagaacctcgtcctccaggagaagctctcgcattacttggatccagaagacccagaactgtgctgttggagacacccagagctagaaaagggggccgacgatatcactgtcggagcagtgcacagacaacaaaaagacaaggtaagagctgattctaattccaatcaacgaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

127

Amino Acids

14.39

Weight (kDa)

4.71

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15181 FvH4_4g15480 FvH4_5g17630
rosa_chinensis	RchiOBHm_Chr2g0113461
rosa_laevigata	RLG00000000521 RLG00000000923 RLG00000000924 RLG00000020750
rosa_multiflora	Rmu_co8349827.1_g000001 Rmu_sc0001954.1_g000005 Rmu_sc0007873.1_g000007 Rmu_sc0008698.1_g000012
rosa_roxburghii	Rroxscaffold_4G00301430 Rroxscaffold_4G00329220
rosa_samantha	Rh1BG222200 Rh1DG248900 Rh2CG246400 Rh3BG312200 Rh4AG022700
rosa_wichuraiana	Rw2G029940 Rw4G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AciI	CCGC	3 cut(s)	87, 129, 178
AclWI	GGATC	2 cut(s)	242, 255
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	378
AcyI	GRCGYC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	142
AjnI	CCWGG	3 cut(s)	43, 90, 222
AluBI	AGCT	5 cut(s)	13, 101, 232, 289, 356
AluI	AGCT	5 cut(s)	13, 101, 232, 289, 356
Alw21I	GWGCWC	2 cut(s)	15, 330
Alw26I	GTCTC	2 cut(s)	119, 271
Alw44I	GTGCAC	1 cut(s)	326
AlwI	GGATC	2 cut(s)	242, 255
Ama87I	CYCGRG	1 cut(s)	14
AoxI	GGCC	2 cut(s)	88, 300
ApaLI	GTGCAC	1 cut(s)	326
ApoI	RAATTY	1 cut(s)	378
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	300
AsuC2I	CCSGG	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	330
BamHI	GGATCC	1 cut(s)	247
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	2 cut(s)	168, 261
Bbv12I	GWGCWC	2 cut(s)	15, 330
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	3 cut(s)	45, 92, 224
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	2 cut(s)	119, 271
BfaI	CTAG	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	4 cut(s)	45, 92, 119, 224
BmeT110I	CYCGRG	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	300
BmiI	GGNNCC	3 cut(s)	169, 249, 301
BmrFI	CCNGG	4 cut(s)	45, 92, 119, 224
BpiI	GAAGAC	2 cut(s)	168, 261
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BpmI	CTGGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
BseBI	CCWGG	3 cut(s)	45, 92, 224
BseDI	CCNNGG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	330
BshFI	GGCC	2 cut(s)	90, 302
BshNI	GGYRCC	1 cut(s)	167
BsiHKAI	GWGCWC	2 cut(s)	15, 330
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	118, 198
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	2 cut(s)	119, 271
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	2 cut(s)	90, 302
BsoBI	CYCGRG	1 cut(s)	14
Bsp1286I	GDGCHC	2 cut(s)	15, 330
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	3 cut(s)	87, 129, 178
BspANI	GGCC	2 cut(s)	90, 302
BspLI	GGNNCC	3 cut(s)	169, 249, 301
BspPI	GGATC	2 cut(s)	242, 255
BspT107I	GGYRCC	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	1 cut(s)	247
BssNI	GRCGYC	1 cut(s)	168
Bst2UI	CCWGG	3 cut(s)	45, 92, 224
Bst4CI	ACNGT	2 cut(s)	267, 316
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	187
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	2 cut(s)	119, 271
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 107, 186
BstNI	CCWGG	3 cut(s)	45, 92, 224
BstSCI	CCNGG	4 cut(s)	43, 90, 117, 222
BstSLI	GKGCMC	1 cut(s)	330
BstV2I	GAAGAC	2 cut(s)	168, 261
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	90, 302
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	312, 330
Cac8I	GCNNGC	1 cut(s)	187
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	300
CviJI	RGCY	9 cut(s)	6, 13, 90, 101, 206, 232, 289, 302, 356
CviKI_1	RGCY	9 cut(s)	6, 13, 90, 101, 206, 232, 289, 302, 356
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	88
Ecl136II	GAGCTC	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	15
Eco32I	GATATC	2 cut(s)	41, 310
Eco53kI	GAGCTC	1 cut(s)	13
Eco88I	CYCGRG	1 cut(s)	14
EcoICRI	GAGCTC	1 cut(s)	13
EcoRII	CCWGG	3 cut(s)	43, 90, 222
EcoRV	GATATC	2 cut(s)	41, 310
EcoT38I	GRGCYC	1 cut(s)	15
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
FaqI	GGGAC	1 cut(s)	110
FauI	CCCGC	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	88
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	90, 302
HapII	CCGG	2 cut(s)	118, 198
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HinfI	GANTC	3 cut(s)	28, 77, 359
HpaII	CCGG	2 cut(s)	118, 198
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	1 cut(s)	320
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	1 cut(s)	328
Hpy99I	CGWCG	2 cut(s)	110, 308
HpyAV	CCTTC	2 cut(s)	184, 202
HpyCH4III	ACNGT	2 cut(s)	267, 316
HpyCH4V	TGCA	1 cut(s)	328
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 107, 186
Hsp92I	GRCGYC	1 cut(s)	168
HspAI	GCGC	1 cut(s)	168
KasI	GGCGCC	1 cut(s)	167
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	320
MaeI	CTAG	1 cut(s)	290
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	2 cut(s)	173, 266
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	2 cut(s)	15, 330
MluCI	AATT	3 cut(s)	21, 364, 378
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	254, 298
MnlI	CCTC	5 cut(s)	77, 139, 143, 224, 230
MspI	CCGG	2 cut(s)	118, 198
MspR9I	CCNGG	4 cut(s)	45, 92, 119, 224
MvaI	CCWGG	3 cut(s)	45, 92, 224
MwoI	GCNNNNNNNGC	3 cut(s)	93, 107, 186
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	1 cut(s)	247
NlaIV	GGNNCC	3 cut(s)	169, 249, 301
NmeAIII	GCCGAG	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	28, 359
PfoI	TCCNGGA	3 cut(s)	43, 117, 222
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	1 cut(s)	71
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	15
Psp6I	CCWGG	3 cut(s)	43, 90, 222
PspGI	CCWGG	3 cut(s)	43, 90, 222
PspN4I	GGNNCC	3 cut(s)	169, 249, 301
PspPI	GGNCC	1 cut(s)	300
PspXI	VCTCGAGB	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	15
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	1 cut(s)	300
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	4 cut(s)	45, 92, 119, 224
SduI	GDGCHC	2 cut(s)	15, 330
SetI	ASST	9 cut(s)	15, 57, 103, 176, 216, 234, 291, 351, 358
SfoI	GGCGCC	1 cut(s)	169
Sfr274I	CTCGAG	1 cut(s)	14
SlaI	CTCGAG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	3 cut(s)	21, 364, 378
SsiI	CCGC	3 cut(s)	87, 129, 178
SspDI	GGCGCC	1 cut(s)	167
SspMI	CTAG	1 cut(s)	290
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	4 cut(s)	43, 90, 117, 222
TaaI	ACNGT	2 cut(s)	267, 316
TaqI	TCGA	5 cut(s)	9, 15, 37, 69, 75
TasI	AATT	3 cut(s)	21, 364, 378
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	28, 359
TscAI	CASTG	2 cut(s)	319, 330
TspRI	CASTG	2 cut(s)	319, 330
VneI	GTGCAC	1 cut(s)	326
XapI	RAATTY	1 cut(s)	378
XhoI	CTCGAG	1 cut(s)	14
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.