Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010556

Physical Location & Seq

Genomic Coordinates Reverse (-)

10088473 .. 10089205

Gene Structure 733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGACTCCAGTAGGTCCCCCCACACCCGATCCAACTCCTTACCCGACCCGAGCTCCAGCAGCAGCACCAGCCAGAGCCTCGCCTCCATCCTCAACAACCCCAATGCCTCCTCCTCCTCCTCCTGGTCCGCCTGGTGGTCCTCCTCCGCCTCCGTCGTCGCCCCGCCCGAATTCCTCCCCCTCCTCCCCAAATCCGCCTCCGACTCCCTCACCCGATCCGACTTCCAGCCCTACCTCTCCTCCATCTCCGATCAATACAACCGCTTCGACGACATACTCAACCACCTCAAGAAGGAGAATCTCGACGACCTTGACTCCATCGGCGGCCAGGGCGAGGCTCTCATCGCGTGTCTCCGCGAAGTCCCCGCCCTCTATTTCAAGGAGGACTTCGCTCTCGAGGACGGCGCCACCTTCAAGTCGGCGTGCCCGTTCTCCGAAGAAGCTGACGCATTACCTGGACGTGGTGGAGCTTCACCTGGTGAAGGAGATCTCGCTGCGATCGAACTCGTTTTTCAAGGCGCAAGGACAGCTGGAGGACTTGAATGTGAAGATCGTGGAGGGATGCAATCGGATAAGGGAGCTCAAGGAGACCATTTCGTTGTTGGATGTGGATTTGGTGGACTCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

210

Amino Acids

21.93

Weight (kDa)

4.38

Isoelectric Point (pI)

63.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15181 FvH4_4g15480 FvH4_5g17630
rosa_chinensis	RchiOBHm_Chr2g0113461
rosa_laevigata	RLG00000000521 RLG00000000923 RLG00000000924 RLG00000020750
rosa_multiflora	Rmu_co8349827.1_g000001 Rmu_sc0001954.1_g000005 Rmu_sc0007873.1_g000007 Rmu_sc0008698.1_g000012
rosa_roxburghii	Rroxscaffold_4G00301430 Rroxscaffold_4G00329220
rosa_samantha	Rh1BG222200 Rh1DG248900 Rh2CG246400 Rh3BG312200 Rh4AG022700
rosa_wichuraiana	Rw2G029940 Rw4G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AccII	CGCG	2 cut(s)	347, 357
AciI	CCGC	8 cut(s)	129, 147, 164, 195, 262, 324, 355, 366
AclWI	GGATC	2 cut(s)	24, 210
AcoI	YGGCCR	1 cut(s)	325
AcsI	RAATTY	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	405
AdeI	CACNNNGTG	1 cut(s)	479
AfiI	CCNNNNNNNGG	6 cut(s)	123, 135, 292, 334, 461, 482
AgsI	TTSAA	4 cut(s)	379, 415, 515, 542
AjiI	CACGTC	1 cut(s)	461
AjnI	CCWGG	5 cut(s)	122, 131, 327, 454, 475
AluBI	AGCT	5 cut(s)	54, 443, 470, 530, 581
AluI	AGCT	5 cut(s)	54, 443, 470, 530, 581
Alw21I	GWGCWC	2 cut(s)	56, 583
Alw26I	GTCTC	2 cut(s)	356, 582
AlwI	GGATC	2 cut(s)	24, 210
Ama87I	CYCGRG	2 cut(s)	49, 395
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	3 cut(s)	60, 63, 494
ApoI	RAATTY	1 cut(s)	170
AspLEI	GCGC	2 cut(s)	407, 521
AspS9I	GGNCC	3 cut(s)	15, 126, 138
AsuHPI	GGTGA	3 cut(s)	202, 465, 491
AvaI	CYCGRG	2 cut(s)	49, 395
AvaII	GGWCC	3 cut(s)	15, 126, 138
BaeGI	GKGCMC	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	2 cut(s)	56, 583
Bbv12I	GWGCWC	2 cut(s)	56, 583
BbvI	GCAGC	3 cut(s)	72, 75, 481
BccI	CCATC	3 cut(s)	95, 251, 326
BceAI	ACGGC	1 cut(s)	418
BciT130I	CCWGG	5 cut(s)	124, 133, 329, 456, 477
BcoDI	GTCTC	2 cut(s)	356, 582
BfaI	CTAG	1 cut(s)	628
BfoI	RGCGCY	1 cut(s)	408
BglII	AGATCT	1 cut(s)	487
BisI	GCNGC	4 cut(s)	61, 64, 325, 495
BlsI	GCNGC	4 cut(s)	62, 65, 326, 496
Bme1390I	CCNGG	5 cut(s)	124, 133, 329, 456, 477
Bme18I	GGWCC	3 cut(s)	15, 126, 138
BmeT110I	CYCGRG	2 cut(s)	49, 395
BmgBI	CACGTC	1 cut(s)	461
BmgT120I	GGNCC	3 cut(s)	15, 126, 138
BmiI	GGNNCC	2 cut(s)	17, 406
BmrFI	CCNGG	5 cut(s)	124, 133, 329, 456, 477
BmsI	GCATC	1 cut(s)	552
BpmI	CTGGAG	2 cut(s)	40, 552
BpuEI	CTTGAG	2 cut(s)	272, 567
BsaHI	GRCGYC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	582
BsaJI	CCNNGG	1 cut(s)	328
BsaXI	ACNNNNNCTCC	6 cut(s)	38, 68, 224, 254, 299, 329
Bsc4I	CCNNNNNNNGG	6 cut(s)	123, 135, 292, 334, 461, 482
Bse1I	ACTGG	1 cut(s)	9
BseBI	CCWGG	5 cut(s)	124, 133, 329, 456, 477
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	3 cut(s)	87, 567, 611
BseLI	CCNNNNNNNGG	6 cut(s)	123, 135, 292, 334, 461, 482
BseNI	ACTGG	1 cut(s)	9
BseRI	GAGGAG	7 cut(s)	100, 103, 106, 109, 133, 173, 229
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	3 cut(s)	72, 75, 481
Bsh1236I	CGCG	2 cut(s)	347, 357
Bsh1285I	CGRYCG	1 cut(s)	501
BshFI	GGCC	1 cut(s)	327
BshNI	GGYRCC	1 cut(s)	404
BsiEI	CGRYCG	1 cut(s)	501
BsiHKAI	GWGCWC	2 cut(s)	56, 583
BsiHKCI	CYCGRG	2 cut(s)	49, 395
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	6 cut(s)	123, 135, 292, 334, 461, 482
BsmAI	GTCTC	2 cut(s)	356, 582
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	327
Bso31I	GGTCTC	1 cut(s)	582
BsoBI	CYCGRG	2 cut(s)	49, 395
Bsp1286I	GDGCHC	3 cut(s)	56, 428, 583
Bsp143I	GATC	6 cut(s)	29, 215, 250, 487, 498, 550
BspACI	CCGC	8 cut(s)	129, 147, 164, 195, 262, 324, 355, 366
BspANI	GGCC	1 cut(s)	327
BspFNI	CGCG	2 cut(s)	347, 357
BspLI	GGNNCC	2 cut(s)	17, 406
BspPI	GGATC	2 cut(s)	24, 210
BspT107I	GGYRCC	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	6 cut(s)	29, 215, 250, 487, 498, 550
BssNI	GRCGYC	1 cut(s)	405
Bst2UI	CCWGG	5 cut(s)	124, 133, 329, 456, 477
BstACI	GRCGYC	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	424
BstENI	CCTNNNNNAGG	2 cut(s)	290, 480
BstF5I	GGATG	3 cut(s)	87, 567, 611
BstFNI	CGCG	2 cut(s)	347, 357
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	2 cut(s)	407, 521
BstKTI	GATC	6 cut(s)	32, 218, 253, 490, 501, 553
BstMAI	GTCTC	2 cut(s)	356, 582
BstMBI	GATC	6 cut(s)	29, 215, 250, 487, 498, 550
BstMCI	CGRYCG	1 cut(s)	501
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 69, 330, 344, 527
BstNI	CCWGG	5 cut(s)	124, 133, 329, 456, 477
BstSCI	CCNGG	5 cut(s)	122, 131, 327, 454, 475
BstSLI	GKGCMC	1 cut(s)	428
BstUI	CGCG	2 cut(s)	347, 357
BstV1I	GCAGC	3 cut(s)	72, 75, 481
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BsuRI	GGCC	1 cut(s)	327
BtgZI	GCGATG	1 cut(s)	328
BtrI	CACGTC	1 cut(s)	461
BtsCI	GGATG	3 cut(s)	87, 567, 611
Cac8I	GCNNGC	1 cut(s)	424
CfoI	GCGC	2 cut(s)	407, 521
Cfr13I	GGNCC	3 cut(s)	15, 126, 138
CseI	GACGC	1 cut(s)	455
CsiI	ACCWGGT	1 cut(s)	475
DinI	GGCGCC	1 cut(s)	406
DpnI	GATC	6 cut(s)	31, 217, 252, 489, 500, 552
DpnII	GATC	6 cut(s)	29, 215, 250, 487, 498, 550
DraIII	CACNNNGTG	1 cut(s)	479
EaeI	YGGCCR	1 cut(s)	325
EciI	GGCGGA	3 cut(s)	118, 136, 184
Ecl136II	GAGCTC	2 cut(s)	54, 581
Eco24I	GRGCYC	2 cut(s)	56, 583
Eco31I	GGTCTC	1 cut(s)	582
Eco47I	GGWCC	3 cut(s)	15, 126, 138
Eco53kI	GAGCTC	2 cut(s)	54, 581
Eco88I	CYCGRG	2 cut(s)	49, 395
EcoICRI	GAGCTC	2 cut(s)	54, 581
EcoNI	CCTNNNNNAGG	2 cut(s)	290, 480
EcoO109I	RGGNCCY	1 cut(s)	15
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	5 cut(s)	122, 131, 327, 454, 475
EcoT38I	GRGCYC	2 cut(s)	56, 583
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
FaiI	YATR	1 cut(s)	275
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	1 cut(s)	347
FauI	CCCGC	2 cut(s)	171, 373
Fnu4HI	GCNGC	4 cut(s)	61, 64, 325, 495
FokI	GGATG	3 cut(s)	74, 574, 618
FriOI	GRGCYC	2 cut(s)	56, 583
Fsp4HI	GCNGC	4 cut(s)	61, 64, 325, 495
FspBI	CTAG	1 cut(s)	628
GlaI	GCGC	2 cut(s)	406, 520
GluI	GCNGC	4 cut(s)	61, 64, 325, 495
GsuI	CTGGAG	2 cut(s)	40, 552
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	327
HgaI	GACGC	1 cut(s)	455
HhaI	GCGC	2 cut(s)	407, 521
Hin1I	GRCGYC	1 cut(s)	405
Hin6I	GCGC	2 cut(s)	405, 519
HinP1I	GCGC	2 cut(s)	405, 519
HinfI	GANTC	5 cut(s)	5, 203, 298, 314, 621
HphI	GGTGA	3 cut(s)	202, 465, 491
Hpy166II	GTNNAC	1 cut(s)	620
Hpy188I	TCNGA	5 cut(s)	202, 220, 250, 436, 571
Hpy188III	TCNNGA	3 cut(s)	289, 302, 395
Hpy8I	GTNNAC	1 cut(s)	620
Hpy99I	CGWCG	4 cut(s)	158, 161, 272, 308
HpyAV	CCTTC	3 cut(s)	286, 421, 476
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	1 cut(s)	565
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 69, 330, 344, 527
HpySE526I	ACGT	1 cut(s)	460
Hsp92I	GRCGYC	1 cut(s)	405
HspAI	GCGC	2 cut(s)	405, 519
KasI	GGCGCC	1 cut(s)	404
Kzo9I	GATC	6 cut(s)	29, 215, 250, 487, 498, 550
LmnI	GCTCC	3 cut(s)	59, 467, 578
Lsp1109I	GCAGC	3 cut(s)	72, 75, 481
LweI	GCATC	1 cut(s)	552
MabI	ACCWGGT	1 cut(s)	475
MaeI	CTAG	1 cut(s)	628
MaeII	ACGT	1 cut(s)	460
MalI	GATC	6 cut(s)	31, 217, 252, 489, 500, 552
MboI	GATC	6 cut(s)	29, 215, 250, 487, 498, 550
MboII	GAAGA	2 cut(s)	449, 560
MflI	RGATCY	1 cut(s)	487
MhlI	GDGCHC	3 cut(s)	56, 428, 583
MluCI	AATT	1 cut(s)	170
Mly113I	GGCGCC	1 cut(s)	405
MlyI	GAGTC	3 cut(s)	197, 308, 615
MmeI	TCCRAC	4 cut(s)	57, 225, 243, 583
MspA1I	CMGCKG	1 cut(s)	530
MspR9I	CCNGG	5 cut(s)	124, 133, 329, 456, 477
MvaI	CCWGG	5 cut(s)	124, 133, 329, 456, 477
MvnI	CGCG	2 cut(s)	347, 357
MwoI	GCNNNNNNNGC	5 cut(s)	60, 69, 330, 344, 527
NarI	GGCGCC	1 cut(s)	405
NdeII	GATC	6 cut(s)	29, 215, 250, 487, 498, 550
NlaIV	GGNNCC	2 cut(s)	17, 406
NmeAIII	GCCGAG	1 cut(s)	603
PaeR7I	CTCGAG	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	3 cut(s)	165, 425, 498
PfeI	GAWTC	1 cut(s)	298
PkrI	GCNGC	4 cut(s)	62, 65, 326, 496
Ple19I	CGATCG	1 cut(s)	501
PleI	GAGTC	3 cut(s)	197, 308, 615
PluTI	GGCGCC	1 cut(s)	408
PpsI	GAGTC	3 cut(s)	197, 308, 615
PpuMI	RGGWCCY	1 cut(s)	15
Psp124BI	GAGCTC	2 cut(s)	56, 583
Psp5II	RGGWCCY	1 cut(s)	15
Psp6I	CCWGG	5 cut(s)	122, 131, 327, 454, 475
PspGI	CCWGG	5 cut(s)	122, 131, 327, 454, 475
PspN4I	GGNNCC	2 cut(s)	17, 406
PspPI	GGNCC	3 cut(s)	15, 126, 138
PspPPI	RGGWCCY	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	487
PvuI	CGATCG	1 cut(s)	501
PvuII	CAGCTG	1 cut(s)	530
SacI	GAGCTC	2 cut(s)	56, 583
SatI	GCNGC	4 cut(s)	61, 64, 325, 495
Sau3AI	GATC	6 cut(s)	29, 215, 250, 487, 498, 550
Sau96I	GGNCC	3 cut(s)	15, 126, 138
SchI	GAGTC	3 cut(s)	197, 308, 615
ScrFI	CCNGG	5 cut(s)	124, 133, 329, 456, 477
SduI	GDGCHC	3 cut(s)	56, 428, 583
SexAI	ACCWGGT	1 cut(s)	475
SfaNI	GCATC	1 cut(s)	552
SfoI	GGCGCC	1 cut(s)	406
Sfr274I	CTCGAG	1 cut(s)	395
SinI	GGWCC	3 cut(s)	15, 126, 138
SlaI	CTCGAG	1 cut(s)	395
SmlI	CTYRAG	3 cut(s)	287, 395, 582
SmoI	CTYRAG	3 cut(s)	287, 395, 582
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	8 cut(s)	129, 147, 164, 195, 262, 324, 355, 366
SspDI	GGCGCC	1 cut(s)	404
SspMI	CTAG	1 cut(s)	628
SstI	GAGCTC	2 cut(s)	56, 583
StyD4I	CCNGG	5 cut(s)	122, 131, 327, 454, 475
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	4 cut(s)	267, 303, 396, 501
TasI	AATT	1 cut(s)	170
TauI	GCSGC	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	298
TseI	GCWGC	3 cut(s)	60, 63, 494
TspGWI	ACGGA	1 cut(s)	142
VpaK11BI	GGWCC	3 cut(s)	15, 126, 138
XagI	CCTNNNNNAGG	2 cut(s)	290, 480
XapI	RAATTY	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	599
XhoI	CTCGAG	1 cut(s)	395
XspI	CTAG	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.