Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010556

Physical Location & Seq

Genomic Coordinates Reverse (-)

8032317 .. 8033602

Gene Structure 1286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000924

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCAAAGCTCCACCTTCGCCACACAAGCCCTTGTTCCCTTGCAATGCTTCCGAGGGAGCATCCTGAAATGCTTTGCTGTTGGGAAGTGGACCTTCCAAGTCACTGCAGGAAATGTCAACAGACGACAAGCTATGCATGCCTTCAAAACTCGCTGGAATGAAACCAGAGAGATTATTGTGGGACAGATTCAGCTTCTCCAAACTATCTCTGATGGCTTCTTACCAATAAGGCGAAGCTCTCATCGCTTGTCTCCGGAAGTCCCCACCCTCTATTTCAAAGAGGACTTTGCATTGGAAGACGGTGCCACCTTCCACTCCACCTGCCCCTTCTCCGGCGTCGCCGAGAACCTCGTCCTCCAGGAGAAGCTCTCGCATTACTTGGACCCACAAGACCCAGAACTAGAAAAGGGGGCCGACGATAACACTGTTGGAGCTAGAAAAGGGGGCCGACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

152

Amino Acids

16.97

Weight (kDa)

8.52

Isoelectric Point (pI)

57.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15181 FvH4_4g15480 FvH4_5g17630
rosa_chinensis	RchiOBHm_Chr2g0113461
rosa_laevigata	RLG00000000521 RLG00000000923 RLG00000000924 RLG00000020750
rosa_multiflora	Rmu_co8349827.1_g000001 Rmu_sc0001954.1_g000005 Rmu_sc0007873.1_g000007 Rmu_sc0008698.1_g000012
rosa_roxburghii	Rroxscaffold_4G00301430 Rroxscaffold_4G00329220
rosa_samantha	Rh1BG222200 Rh1DG248900 Rh2CG246400 Rh3BG312200 Rh4AG022700
rosa_wichuraiana	Rw2G029940 Rw4G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	329
Acc36I	ACCTGC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	302
AccIII	TCCGGA	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	336
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	2 cut(s)	145, 277
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	6 cut(s)	9, 131, 193, 237, 367, 434
AluI	AGCT	6 cut(s)	9, 131, 193, 237, 367, 434
Alw26I	GTCTC	1 cut(s)	255
Aor13HI	TCCGGA	1 cut(s)	253
AoxI	GGCC	2 cut(s)	411, 445
AspS9I	GGNCC	4 cut(s)	90, 382, 411, 445
AvaII	GGWCC	2 cut(s)	90, 382
BanI	GGYRCC	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	303
BccI	CCATC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	2 cut(s)	401, 435
BfmI	CTRYAG	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	329
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	2 cut(s)	90, 382
BmgT120I	GGNCC	4 cut(s)	90, 382, 411, 445
BmiI	GGNNCC	4 cut(s)	304, 384, 412, 446
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	303
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
BpmI	CTGGAG	1 cut(s)	341
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	50
BseAI	TCCGGA	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMI	GCAATG	1 cut(s)	50
BshFI	GGCC	2 cut(s)	413, 447
BshNI	GGYRCC	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	254, 333
BslFI	GGGAC	2 cut(s)	195, 245
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	2 cut(s)	195, 245
BsnI	GGCC	2 cut(s)	413, 447
Bsp13I	TCCGGA	1 cut(s)	253
BspANI	GGCC	2 cut(s)	413, 447
BspEI	TCCGGA	1 cut(s)	253
BspLI	GGNNCC	4 cut(s)	304, 384, 412, 446
BspMAI	CTGCAG	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	52
BssNI	GRCGYC	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	2 cut(s)	302, 427
BstACI	GRCGYC	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	60
BstMAI	GTCTC	1 cut(s)	255
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 137, 243
BstNI	CCWGG	1 cut(s)	359
BstNSI	RCATGY	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	105
BstV2I	GAAGAC	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	413, 447
BtgZI	GCGATG	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	60
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	2 cut(s)	102, 423
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	138
Cfr13I	GGNCC	4 cut(s)	90, 382, 411, 445
CseI	GACGC	1 cut(s)	325
CviAII	CATG	1 cut(s)	137
Eco47I	GGWCC	2 cut(s)	90, 382
EcoRII	CCWGG	1 cut(s)	357
EcoT22I	ATGCAT	1 cut(s)	138
FaeI	CATG	1 cut(s)	140
FaiI	YATR	2 cut(s)	134, 138
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	2 cut(s)	195, 245
FatI	CATG	1 cut(s)	136
FokI	GGATG	1 cut(s)	47
FspBI	CTAG	2 cut(s)	401, 435
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	2 cut(s)	413, 447
HapII	CCGG	2 cut(s)	254, 333
HgaI	GACGC	1 cut(s)	325
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	1 cut(s)	140
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	187
HpaII	CCGG	2 cut(s)	254, 333
Hpy166II	GTNNAC	2 cut(s)	90, 118
Hpy188I	TCNGA	2 cut(s)	53, 211
Hpy188III	TCNNGA	2 cut(s)	64, 254
Hpy8I	GTNNAC	2 cut(s)	90, 118
Hpy99I	CGWCG	3 cut(s)	341, 419, 453
HpyAV	CCTTC	5 cut(s)	25, 103, 151, 319, 337
HpyCH4III	ACNGT	2 cut(s)	302, 427
HpyCH4V	TGCA	5 cut(s)	4, 43, 107, 136, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 137, 243
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	1 cut(s)	140
Kpn2I	TCCGGA	1 cut(s)	253
LmnI	GCTCC	3 cut(s)	14, 57, 431
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	2 cut(s)	401, 435
MaeIII	GTNAC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	5 cut(s)	47, 274, 278, 359, 365
Mph1103I	ATGCAT	1 cut(s)	138
MroI	TCCGGA	1 cut(s)	253
MspI	CCGG	2 cut(s)	254, 333
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	3 cut(s)	26, 137, 243
NlaIII	CATG	1 cut(s)	140
NlaIV	GGNNCC	4 cut(s)	304, 384, 412, 446
NmeAIII	GCCGAG	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	138
NspI	RCATGY	1 cut(s)	140
PaeI	GCATGC	1 cut(s)	140
PaqCI	CACCTGC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	187
PfoI	TCCNGGA	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	4 cut(s)	304, 384, 412, 446
PspPI	GGNCC	4 cut(s)	90, 382, 411, 445
PstI	CTGCAG	1 cut(s)	109
Sau96I	GGNCC	4 cut(s)	90, 382, 411, 445
ScrFI	CCNGG	1 cut(s)	359
SfaNI	GCATC	1 cut(s)	69
SfcI	CTRYAG	1 cut(s)	105
SinI	GGWCC	2 cut(s)	90, 382
SphI	GCATGC	1 cut(s)	140
SspMI	CTAG	2 cut(s)	401, 435
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	302, 427
TfiI	GAWTC	1 cut(s)	187
TscAI	CASTG	2 cut(s)	109, 430
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	174
TspRI	CASTG	2 cut(s)	109, 430
VpaK11BI	GGWCC	2 cut(s)	90, 382
XceI	RCATGY	1 cut(s)	140
XspI	CTAG	2 cut(s)	401, 435
Zsp2I	ATGCAT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.