Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010556

Physical Location & Seq

Genomic Coordinates Reverse (-)

1477963 .. 1480761

Gene Structure 2799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000521

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCCTTTTCCATTTCAGAATTTTCTCCAAGTTGTGCCATGTGGATTTCGTCGTCACCGATGCTATCAACTTGGACGAGCAACTGATGGGTTCGTCAACACCATGGAGAGCCTTGACTTAGACTCCATCGGCGGCCACGGCGAAGCTCTCGTCGCTTGTCTCCGGGAAGTCCCCGCCCTTTATTTCAAAGAGGACTTCGCATTGGAAGAAGGCGCTACCTTCCGCTCCGCCGGCCCCTTCTCCGGCGTAGCCAAGAACCTCGTCCTCCAGGAGAAGCTCTTGCATTACTTGGACCCAGAAGACCCAGAACTGTGTTGTTGGAGACACCCAAAGCTAGAAAAGGGGGGCCGACGATATCACTGTCGGAGCAGTGCACCCAGCTCAGCTCTTGTTGCCTCTGCAGATTGTGCTGGAGCTTTGGATGTCACAGACGACCTACAACATTTGTTGGTGTTTGTGTTGAATATAGATACTAGAAGATTATTCTCACTAGATGCCAGAAGATTATTCTCATTGCGGGATTGTAGTTTCCAGTATGGTAGCTTAGTTGATTTGGTAGATGGACATACATCAGTACTTTATCATAGGCTTCGGCCACTGGTTTCCAATGTATACATGAAGATTTGGTCTAAGCTTCAAAAAGTACTTACATCTTGCAAACCCTCATCGAAGGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

227

Amino Acids

25.44

Weight (kDa)

8.07

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15181 FvH4_4g15480 FvH4_5g17630
rosa_chinensis	RchiOBHm_Chr2g0113461
rosa_laevigata	RLG00000000521 RLG00000000923 RLG00000000924 RLG00000020750
rosa_multiflora	Rmu_co8349827.1_g000001 Rmu_sc0001954.1_g000005 Rmu_sc0007873.1_g000007 Rmu_sc0008698.1_g000012
rosa_roxburghii	Rroxscaffold_4G00301430 Rroxscaffold_4G00329220
rosa_samantha	Rh1BG222200 Rh1DG248900 Rh2CG246400 Rh3BG312200 Rh4AG022700
rosa_wichuraiana	Rw2G029940 Rw4G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	225
AccI	GTMKAC	1 cut(s)	612
AciI	CCGC	5 cut(s)	132, 174, 223, 228, 517
AcoI	YGGCCR	2 cut(s)	133, 593
AcsI	RAATTY	1 cut(s)	19
AfaI	GTAC	2 cut(s)	576, 645
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgsI	TTSAA	3 cut(s)	187, 463, 638
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	8 cut(s)	146, 277, 334, 381, 386, 416, 543, 634
AluI	AGCT	8 cut(s)	146, 277, 334, 381, 386, 416, 543, 634
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	2 cut(s)	164, 316
Alw44I	GTGCAC	1 cut(s)	372
AoxI	GGCC	4 cut(s)	133, 232, 346, 593
ApaLI	GTGCAC	1 cut(s)	372
ApoI	RAATTY	1 cut(s)	19
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	3 cut(s)	233, 292, 346
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	376
BccI	CCATC	3 cut(s)	80, 134, 554
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	269
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	164, 316
BfaI	CTAG	3 cut(s)	335, 474, 491
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	216
BisI	GCNGC	1 cut(s)	133
BlpI	GCTNAGC	1 cut(s)	382
BlsI	GCNGC	1 cut(s)	134
BmcAI	AGTACT	2 cut(s)	576, 645
Bme1390I	CCNGG	2 cut(s)	164, 269
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	3 cut(s)	233, 292, 346
BmiI	GGNNCC	3 cut(s)	235, 294, 347
BmrFI	CCNGG	2 cut(s)	164, 269
BmsI	GCATC	2 cut(s)	50, 484
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	2 cut(s)	251, 432
Bpu1102I	GCTNAGC	1 cut(s)	382
BpuMI	CCSGG	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	102, 136
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	2 cut(s)	532, 603
Bse3DI	GCAATG	1 cut(s)	512
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	102, 136
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMI	GCAATG	1 cut(s)	512
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	2 cut(s)	532, 603
BseSI	GKGCMC	1 cut(s)	376
BseYI	CCCAGC	1 cut(s)	377
BshFI	GGCC	4 cut(s)	135, 234, 348, 595
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	3 cut(s)	163, 231, 243
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmAI	GTCTC	2 cut(s)	164, 316
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	4 cut(s)	135, 234, 348, 595
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp1720I	GCTNAGC	1 cut(s)	382
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	5 cut(s)	132, 174, 223, 228, 517
BspANI	GGCC	4 cut(s)	135, 234, 348, 595
BspCNI	CTCAG	1 cut(s)	395
BspLI	GGNNCC	3 cut(s)	235, 294, 347
BspMAI	CTGCAG	1 cut(s)	403
BsrBI	CCGCTC	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	512
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	532, 603
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	2 cut(s)	102, 136
BssNAI	GTATAC	1 cut(s)	613
BssT1I	CCWWGG	1 cut(s)	102
Bst1107I	GTATAC	1 cut(s)	613
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	2 cut(s)	312, 362
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	4 cut(s)	118, 382, 544, 630
BstDSI	CCRYGG	2 cut(s)	102, 136
BstF5I	GGATG	1 cut(s)	427
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	215
BstMAI	GTCTC	2 cut(s)	164, 316
BstMWI	GCNNNNNNNGC	5 cut(s)	138, 152, 231, 392, 407
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	162, 267
BstSFI	CTRYAG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	376
BstV2I	GAAGAC	1 cut(s)	306
BstZ17I	GTATAC	1 cut(s)	613
BsuRI	GGCC	4 cut(s)	135, 234, 348, 595
BtgI	CCRYGG	2 cut(s)	102, 136
BtsCI	GGATG	1 cut(s)	427
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	3 cut(s)	358, 376, 596
Cac8I	GCNNGC	1 cut(s)	232
CfoI	GCGC	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	3 cut(s)	233, 292, 346
Csp6I	GTAC	2 cut(s)	575, 644
CviAII	CATG	3 cut(s)	39, 103, 616
CviQI	GTAC	2 cut(s)	575, 644
DdeI	CTNAG	4 cut(s)	118, 382, 544, 630
EaeI	YGGCCR	2 cut(s)	133, 593
EciI	GGCGGA	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	356
Eco47I	GGWCC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	267
EcoRV	GATATC	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	3 cut(s)	42, 106, 619
FaiI	YATR	8 cut(s)	40, 104, 467, 537, 567, 585, 613, 617
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	3 cut(s)	38, 102, 615
FauI	CCCGC	2 cut(s)	181, 510
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	1 cut(s)	133
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	133
FspBI	CTAG	3 cut(s)	335, 474, 491
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	1 cut(s)	133
GsaI	CCCAGC	1 cut(s)	381
GsuI	CTGGAG	2 cut(s)	251, 432
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	4 cut(s)	135, 234, 348, 595
HapII	CCGG	3 cut(s)	163, 231, 243
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	42, 106, 619
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	3 cut(s)	163, 231, 243
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	3 cut(s)	97, 374, 613
Hpy188I	TCNGA	2 cut(s)	18, 366
Hpy8I	GTNNAC	3 cut(s)	97, 374, 613
Hpy99I	CGWCG	3 cut(s)	54, 155, 354
HpyAV	CCTTC	4 cut(s)	203, 229, 247, 664
HpyCH4III	ACNGT	2 cut(s)	312, 362
HpyCH4V	TGCA	4 cut(s)	283, 374, 401, 657
HpyF10VI	GCNNNNNNNGC	5 cut(s)	138, 152, 231, 392, 407
HpyF3I	CTNAG	4 cut(s)	118, 382, 544, 630
Hsp92II	CATG	3 cut(s)	42, 106, 619
HspAI	GCGC	1 cut(s)	213
KroI	GCCGGC	1 cut(s)	230
KroNI	GCCGGC	1 cut(s)	232
LmnI	GCTCC	3 cut(s)	230, 366, 413
LweI	GCATC	2 cut(s)	50, 484
MaeI	CTAG	3 cut(s)	335, 474, 491
MaeIII	GTNAC	2 cut(s)	53, 424
MbiI	CCGCTC	1 cut(s)	225
MboII	GAAGA	5 cut(s)	218, 311, 489, 513, 631
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	299, 344
MnlI	CCTC	5 cut(s)	184, 269, 275, 406, 673
MroNI	GCCGGC	1 cut(s)	230
MspI	CCGG	3 cut(s)	163, 231, 243
MspR9I	CCNGG	2 cut(s)	164, 269
MvaI	CCWGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	5 cut(s)	138, 152, 231, 392, 407
NaeI	GCCGGC	1 cut(s)	232
NciI	CCSGG	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	102
NgoMIV	GCCGGC	1 cut(s)	230
NlaIII	CATG	3 cut(s)	42, 106, 619
NlaIV	GGNNCC	3 cut(s)	235, 294, 347
NmuCI	GTSAC	2 cut(s)	53, 424
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PdiI	GCCGGC	1 cut(s)	232
PfoI	TCCNGGA	2 cut(s)	162, 267
PkrI	GCNGC	1 cut(s)	134
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	3 cut(s)	235, 294, 347
PspPI	GGNCC	3 cut(s)	233, 292, 346
PstI	CTGCAG	1 cut(s)	403
RsaI	GTAC	2 cut(s)	576, 645
RsaNI	GTAC	2 cut(s)	575, 644
SatI	GCNGC	1 cut(s)	133
Sau96I	GGNCC	3 cut(s)	233, 292, 346
ScaI	AGTACT	2 cut(s)	576, 645
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	164, 269
SduI	GDGCHC	1 cut(s)	376
SfaNI	GCATC	2 cut(s)	50, 484
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	1 cut(s)	292
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	5 cut(s)	132, 174, 223, 228, 517
SspMI	CTAG	3 cut(s)	335, 474, 491
StyD4I	CCNGG	2 cut(s)	162, 267
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	312, 362
TaqI	TCGA	1 cut(s)	668
TasI	AATT	1 cut(s)	19
TatI	WGTACW	2 cut(s)	574, 643
TauI	GCSGC	1 cut(s)	135
TscAI	CASTG	3 cut(s)	365, 376, 603
TseFI	GTSAC	2 cut(s)	53, 424
Tsp45I	GTSAC	2 cut(s)	53, 424
TspDTI	ATGAA	1 cut(s)	632
TspRI	CASTG	3 cut(s)	365, 376, 603
VneI	GTGCAC	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	612
XspI	CTAG	3 cut(s)	335, 474, 491
ZrmI	AGTACT	2 cut(s)	576, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.