Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002042

Physical Location & Seq

Genomic Coordinates Forward (+)

21054032 .. 21060901

Gene Structure 6870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17160.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGTTTGCTCAGTTGGAAGTGGGAGGATGGCAGTGATGGCAAGGCTTCTCGCGGGTGGGAGTGTGTCGCAAAGCCTTGCAGAGGATGTTCCTCATCAGAAATTCGCGGTATATAGAGAATTAATTGAGGCGAATGATGCAAATTTGCTTGACGAAGAAGATATGCACGTGTTTGATTTGGAGCCGATGACTGATACTTTGCTTTTGGTATGTTGCAATGCTTGTAAAAAACCAGTCAAGGCTAGTCAATATGCAGCCCATTCAGTACTTTGCAGGTCATTAAATTCTACGAAGGAAACTAATTTGGAAGTTGGTGCTGCTATTGAGCAAAAGAAGCCTCCAAGGAAGGAGAAGAAAAAGTTATCAACTGCATATGCTCATCAGTCAACATCAGTTAGAGAGCTCGAAAGGTCTGAATCTGCAGATGATGTTGCTGTGTCTCAACCTCAGTTGGATGGGAAAATAGGAATGAATTCTTTTTGTGGTACAGGCGGAAAAGGAAACTCAGCATCTGTAGATACAACCTATATGATGGATGGCTCAGGAGTTAGCCCTGATAATACCAGGATAGCAGGTGAGCAGCCACAGCCACCACTATCAGATGATCTGGGAGCAACATCTATTGTATCAGAACTTAGAAGTGCTCAGGAAACATGTCCATATTGTCCTGTTCCCCTTGCTACTAAAGTATATTACTCGCAAAGAAGTAATCGTCTCCGTACAGCACTTTGTCATCTATACTCTGAGGCAGTTGTATCAAATAAGGAGCTTTGCACTGTCATGAGGGACACGCAGTCTTTGCCTTCTATACAGACACCTGATCAAATTCTCTCACAAACTTCAGAAGCTTGCTTGGACAAATCAATAGGTTCCCTGCCTGCCGATGACCTCTCAAATCAGTTTCCTGTTGATAATGTTCCGAGGCCTCAGGCTGCAGGTGTAGGTTTGACAAGAAGCAAACTTCTTTCAAAACCTTATTCTTTTGCAGGACAATCTTTGGGAACTTTGCAACAGCGAAATGACAGAGTTCCTGTTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sgf11

Protein Analysis

347

Amino Acids

37.29

Weight (kDa)

5.65

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002042)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160
malus_domestica	MD13G1174200.v1.1 MD16G1175500.v1.1 MD16G1175700.v1.1
prunus_persica	Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1
pyrus_communis	pycom13g14980 pycom16g14720
rosa_chinensis	RchiOBHm_Chr4g0420931
rosa_laevigata	RLG00000007719
rosa_multiflora	Rmu_sc0002006.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363310
rosa_rugosa	Rorug04G0167100 Rorug04G0167200
rosa_samantha	Rh4AG228400 Rh4BG231600 Rh4CG243300 Rh4DG227000
rosa_wichuraiana	Rw4G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	563, 926
Acc36I	ACCTGC	3 cut(s)	264, 563, 926
AccII	CGCG	2 cut(s)	53, 107
AciI	CCGC	3 cut(s)	53, 107, 492
AcsI	RAATTY	5 cut(s)	101, 142, 283, 472, 825
AcuI	CTGAAG	1 cut(s)	825
AcvI	CACGTG	1 cut(s)	169
AfaI	GTAC	3 cut(s)	267, 487, 721
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflIII	ACRYGT	2 cut(s)	168, 653
AgsI	TTSAA	1 cut(s)	969
AhdI	GACNNNNNGTC	1 cut(s)	793
AjnI	CCWGG	1 cut(s)	563
AluBI	AGCT	3 cut(s)	403, 769, 848
AluI	AGCT	3 cut(s)	403, 769, 848
Alw21I	GWGCWC	2 cut(s)	405, 646
Alw26I	GTCTC	2 cut(s)	444, 719
AlwNI	CAGNNNCTG	1 cut(s)	512
AoxI	GGCC	1 cut(s)	923
ApeKI	GCWGC	4 cut(s)	254, 317, 580, 932
ApoI	RAATTY	5 cut(s)	101, 142, 283, 472, 825
ArsI	GACNNNNNNTTYG	2 cut(s)	181, 213
AseI	ATTAAT	1 cut(s)	122
Asp700I	GAANNNNTTC	1 cut(s)	472
AsuHPI	GGTGA	1 cut(s)	587
AxyI	CCTNAGG	1 cut(s)	927
BanII	GRGCYC	1 cut(s)	405
BbrPI	CACGTG	1 cut(s)	169
Bbv12I	GWGCWC	2 cut(s)	405, 646
BbvI	GCAGC	4 cut(s)	266, 304, 592, 919
BccI	CCATC	5 cut(s)	22, 31, 449, 526, 530
BciT130I	CCWGG	1 cut(s)	565
BclI	TGATCA	1 cut(s)	820
BcoDI	GTCTC	2 cut(s)	444, 719
BfaI	CTAG	1 cut(s)	243
BfmI	CTRYAG	3 cut(s)	420, 513, 933
BfuAI	ACCTGC	3 cut(s)	264, 563, 926
BisI	GCNGC	4 cut(s)	255, 318, 581, 933
BlsI	GCNGC	4 cut(s)	256, 319, 582, 934
BmcAI	AGTACT	1 cut(s)	267
Bme1390I	CCNGG	1 cut(s)	565
BmeRI	GACNNNNNGTC	1 cut(s)	793
BmiI	GGNNCC	2 cut(s)	183, 871
BmrFI	CCNGG	1 cut(s)	565
BmsI	GCATC	2 cut(s)	127, 518
Bpu10I	CCTNAGC	2 cut(s)	541, 645
BsaAI	YACGTR	1 cut(s)	169
BsaJI	CCNNGG	2 cut(s)	341, 920
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	233
Bse21I	CCTNAGG	1 cut(s)	927
Bse3DI	GCAATG	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	565
BseDI	CCNNGG	2 cut(s)	341, 920
BseGI	GGATG	4 cut(s)	33, 91, 460, 541
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	7 cut(s)	24, 461, 519, 555, 659, 735, 941
BseNI	ACTGG	1 cut(s)	233
BseXI	GCAGC	4 cut(s)	266, 304, 592, 919
Bsh1236I	CGCG	2 cut(s)	53, 107
BshFI	GGCC	1 cut(s)	925
BsiHKAI	GWGCWC	2 cut(s)	405, 646
BslFI	GGGAC	1 cut(s)	800
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	2 cut(s)	444, 719
BsmBI	CGTCTC	1 cut(s)	719
BsmFI	GGGAC	1 cut(s)	800
BsnI	GGCC	1 cut(s)	925
Bsp1286I	GDGCHC	2 cut(s)	405, 646
Bsp143I	GATC	2 cut(s)	604, 820
BspACI	CCGC	3 cut(s)	53, 107, 492
BspANI	GGCC	1 cut(s)	925
BspCNI	CTCAG	7 cut(s)	23, 460, 518, 554, 658, 736, 940
BspFNI	CGCG	2 cut(s)	53, 107
BspHI	TCATGA	1 cut(s)	780
BspLI	GGNNCC	2 cut(s)	183, 871
BspMAI	CTGCAG	2 cut(s)	424, 937
BspMI	ACCTGC	3 cut(s)	264, 563, 926
BsrDI	GCAATG	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	341, 920
BssMI	GATC	2 cut(s)	604, 820
BssT1I	CCWWGG	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	565
Bst4CI	ACNGT	1 cut(s)	778
BstAPI	GCANNNNNTGC	1 cut(s)	799
BstBAI	YACGTR	1 cut(s)	169
BstC8I	GCNNGC	2 cut(s)	850, 879
BstDEI	CTNAG	8 cut(s)	10, 447, 505, 541, 635, 645, 744, 927
BstENI	CCTNNNNNAGG	1 cut(s)	80
BstF5I	GGATG	4 cut(s)	33, 91, 460, 541
BstFNI	CGCG	2 cut(s)	53, 107
BstKTI	GATC	2 cut(s)	607, 823
BstMAI	GTCTC	2 cut(s)	444, 719
BstMBI	GATC	2 cut(s)	604, 820
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 137, 334, 586, 799
BstNI	CCWGG	1 cut(s)	565
BstNSI	RCATGY	1 cut(s)	657
BstSCI	CCNGG	1 cut(s)	563
BstSFI	CTRYAG	3 cut(s)	420, 513, 933
BstUI	CGCG	2 cut(s)	53, 107
BstV1I	GCAGC	4 cut(s)	266, 304, 592, 919
Bsu36I	CCTNAGG	1 cut(s)	927
BsuRI	GGCC	1 cut(s)	925
BtsCI	GGATG	4 cut(s)	33, 91, 460, 541
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	39, 774
BveI	ACCTGC	3 cut(s)	264, 563, 926
Cac8I	GCNNGC	2 cut(s)	850, 879
CaiI	CAGNNNCTG	1 cut(s)	512
CciI	TCATGA	1 cut(s)	780
Csp6I	GTAC	3 cut(s)	266, 486, 720
CviAII	CATG	2 cut(s)	654, 781
CviQI	GTAC	3 cut(s)	266, 486, 720
DdeI	CTNAG	8 cut(s)	10, 447, 505, 541, 635, 645, 744, 927
DpnI	GATC	2 cut(s)	606, 822
DpnII	GATC	2 cut(s)	604, 820
DriI	GACNNNNNGTC	1 cut(s)	793
Eam1105I	GACNNNNNGTC	1 cut(s)	793
EciI	GGCGGA	1 cut(s)	507
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	341
Eco147I	AGGCCT	1 cut(s)	925
Eco24I	GRGCYC	1 cut(s)	405
Eco53kI	GAGCTC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	825
Eco72I	CACGTG	1 cut(s)	169
Eco81I	CCTNAGG	1 cut(s)	927
EcoICRI	GAGCTC	1 cut(s)	403
EcoNI	CCTNNNNNAGG	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	563
EcoT14I	CCWWGG	1 cut(s)	341
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	341
Esp3I	CGTCTC	1 cut(s)	719
FaeI	CATG	2 cut(s)	657, 784
FaqI	GGGAC	1 cut(s)	800
FatI	CATG	2 cut(s)	653, 780
FauI	CCCGC	1 cut(s)	46
FauNDI	CATATG	1 cut(s)	373
FbaI	TGATCA	1 cut(s)	820
Fnu4HI	GCNGC	4 cut(s)	255, 318, 581, 933
FokI	GGATG	4 cut(s)	40, 98, 467, 548
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	4 cut(s)	255, 318, 581, 933
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	4 cut(s)	255, 318, 581, 933
HaeIII	GGCC	1 cut(s)	925
Hin1II	CATG	2 cut(s)	657, 784
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HindIII	AAGCTT	1 cut(s)	846
HinfI	GANTC	1 cut(s)	416
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	7 cut(s)	99, 415, 601, 631, 745, 844, 921
Hpy188III	TCNNGA	3 cut(s)	543, 647, 781
Hpy8I	GTNNAC	1 cut(s)	387
HpyAV	CCTTC	3 cut(s)	286, 340, 813
HpyCH4III	ACNGT	1 cut(s)	778
HpyCH4IV	ACGT	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 137, 334, 586, 799
HpyF3I	CTNAG	8 cut(s)	10, 447, 505, 541, 635, 645, 744, 927
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	657, 784
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	2 cut(s)	604, 820
LmnI	GCTCC	3 cut(s)	181, 611, 766
Lsp1109I	GCAGC	4 cut(s)	266, 304, 592, 919
LweI	GCATC	2 cut(s)	127, 518
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	1 cut(s)	168
MalI	GATC	2 cut(s)	606, 822
MboI	GATC	2 cut(s)	604, 820
MboII	GAAGA	3 cut(s)	167, 170, 364
MhlI	GDGCHC	2 cut(s)	405, 646
MluCI	AATT	8 cut(s)	101, 119, 123, 142, 283, 301, 472, 825
MmeI	TCCRAC	1 cut(s)	432
MroXI	GAANNNNTTC	1 cut(s)	472
MseI	TTAA	2 cut(s)	122, 281
MslI	CAYNNNNRTG	1 cut(s)	779
MspR9I	CCNGG	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	565
MvnI	CGCG	2 cut(s)	53, 107
MwoI	GCNNNNNNNGC	5 cut(s)	38, 137, 334, 586, 799
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	2 cut(s)	604, 820
NlaIII	CATG	2 cut(s)	657, 784
NlaIV	GGNNCC	2 cut(s)	183, 871
NspI	RCATGY	1 cut(s)	657
PagI	TCATGA	1 cut(s)	780
PaqCI	CACCTGC	2 cut(s)	563, 926
PceI	AGGCCT	1 cut(s)	925
PciI	ACATGT	1 cut(s)	653
PdmI	GAANNNNTTC	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	416
PkrI	GCNGC	4 cut(s)	256, 319, 582, 934
PmaCI	CACGTG	1 cut(s)	169
PmlI	CACGTG	1 cut(s)	169
Ppu21I	YACGTR	1 cut(s)	169
PscI	ACATGT	1 cut(s)	653
PshBI	ATTAAT	1 cut(s)	122
Psp124BI	GAGCTC	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	563
PspCI	CACGTG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	563
PspN4I	GGNNCC	2 cut(s)	183, 871
PstI	CTGCAG	2 cut(s)	424, 937
PstNI	CAGNNNCTG	1 cut(s)	512
RsaI	GTAC	3 cut(s)	267, 487, 721
RsaNI	GTAC	3 cut(s)	266, 486, 720
RseI	CAYNNNNRTG	1 cut(s)	779
SacI	GAGCTC	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	122, 281
SatI	GCNGC	4 cut(s)	255, 318, 581, 933
Sau3AI	GATC	2 cut(s)	604, 820
ScaI	AGTACT	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	565
SduI	GDGCHC	2 cut(s)	405, 646
SfaNI	GCATC	2 cut(s)	127, 518
SfcI	CTRYAG	3 cut(s)	420, 513, 933
SmiMI	CAYNNNNRTG	1 cut(s)	779
Sse9I	AATT	8 cut(s)	101, 119, 123, 142, 283, 301, 472, 825
SseBI	AGGCCT	1 cut(s)	925
SsiI	CCGC	3 cut(s)	53, 107, 492
SspMI	CTAG	1 cut(s)	243
SstI	GAGCTC	1 cut(s)	405
StuI	AGGCCT	1 cut(s)	925
StyD4I	CCNGG	1 cut(s)	563
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	1 cut(s)	778
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	1 cut(s)	405
TasI	AATT	8 cut(s)	101, 119, 123, 142, 283, 301, 472, 825
TatI	WGTACW	1 cut(s)	265
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	2 cut(s)	122, 281
Tru9I	TTAA	2 cut(s)	122, 281
TscAI	CASTG	2 cut(s)	39, 781
TseI	GCWGC	4 cut(s)	254, 317, 580, 932
TspDTI	ATGAA	1 cut(s)	485
TspGWI	ACGGA	1 cut(s)	707
TspRI	CASTG	2 cut(s)	39, 781
VspI	ATTAAT	1 cut(s)	122
XagI	CCTNNNNNAGG	1 cut(s)	80
XapI	RAATTY	5 cut(s)	101, 142, 283, 472, 825
XceI	RCATGY	1 cut(s)	657
XmnI	GAANNNNTTC	1 cut(s)	472
XspI	CTAG	1 cut(s)	243
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.