Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002042

Physical Location & Seq

Genomic Coordinates Reverse (-)

14894772 .. 14897492

Gene Structure 2721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1175500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGATGGATGGTTCCGGAGTTAGTCCAGGAAATACCAATGGCTCAACATCTGTGATGCTTCCACCAACGAAACGATTTAAAATGGTAGCAGGTCAGCAGCTGCCACTATCAGATGATATAGGAACAGCATCTGCTGTATCAAAACTTGCAAGTACTCAGGATGCATGTCCTTATAGGGATTCTCCAAAAGGAGCCATTCCTGCAAGTGAAATACCTTATCCTGCTCTTAAGTATAAGAAGTCCGGGCAAGCCCTTGAATGCTGCCTGCCAATTAAAGATTGTCCTCTTCCCCTTGCTACTAAAGTATATTACTCTCAAAGATGCAATCGACTCCGGTCAGATCTTAGTCATCTTTATCATGAGGCAATGGCATCGACTGAGGAGCTTTGTAGTGACATGAGAGACTCACAGCATTTGCCTTCTTTAAGGAAACCTGATCAAATTCTCGCACAAAATTCAGAAGTTTGCTTGGGGAACTCGGTAGGTTGCCAGCCTGACGGTGACTTCTCGAATCAGTTACCCGTGGATAATGTTCCAAGGCCTGAGGTGGCTAGTGTTCGTTTAACTAGAAGCAAAATTCTTTCGAAACCTTATTCTTTTGCGGGTAACTCAGGACAATCACTGGGGATCATGCAACAGAAAACTGGCAGCATTCACGTAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sgf11

Protein Analysis

222

Amino Acids

23.8

Weight (kDa)

8.39

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002042)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160
malus_domestica	MD13G1174200.v1.1 MD16G1175500.v1.1 MD16G1175700.v1.1
prunus_persica	Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1
pyrus_communis	pycom13g14980 pycom16g14720
rosa_chinensis	RchiOBHm_Chr4g0420931
rosa_laevigata	RLG00000007719
rosa_multiflora	Rmu_sc0002006.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363310
rosa_rugosa	Rorug04G0167100 Rorug04G0167200
rosa_samantha	Rh4AG228400 Rh4BG231600 Rh4CG243300 Rh4DG227000
rosa_wichuraiana	Rw4G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	14
AciI	CCGC	1 cut(s)	602
AclWI	GGATC	1 cut(s)	635
AcsI	RAATTY	3 cut(s)	441, 454, 576
AfaI	GTAC	1 cut(s)	154
AflII	CTTAAG	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	2 cut(s)	100, 385
AluI	AGCT	2 cut(s)	100, 385
Alw26I	GTCTC	1 cut(s)	396
AlwI	GGATC	1 cut(s)	635
AlwNI	CAGNNNCTG	2 cut(s)	100, 131
Aor13HI	TCCGGA	1 cut(s)	14
AoxI	GGCC	1 cut(s)	539
ApeKI	GCWGC	4 cut(s)	97, 100, 261, 648
ApoI	RAATTY	3 cut(s)	441, 454, 576
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	512
AsuII	TTCGAA	1 cut(s)	584
AxyI	CCTNAGG	1 cut(s)	543
BbvI	GCAGC	4 cut(s)	87, 109, 248, 660
BccI	CCATC	1 cut(s)	2
BcgI	CGANNNNNNTGC	2 cut(s)	354, 388
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	2 cut(s)	552, 567
BfrI	CTTAAG	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	80
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	4 cut(s)	98, 101, 262, 649
BlsI	GCNGC	4 cut(s)	99, 102, 263, 650
BmcAI	AGTACT	1 cut(s)	154
Bme1390I	CCNGG	2 cut(s)	27, 244
BmiI	GGNNCC	2 cut(s)	13, 193
BmrFI	CCNGG	2 cut(s)	27, 244
BmrI	ACTGGG	1 cut(s)	632
BmsI	GCATC	5 cut(s)	45, 137, 151, 311, 380
BmuI	ACTGGG	1 cut(s)	632
BoxI	GACNNNNGTC	1 cut(s)	334
Bpu14I	TTCGAA	1 cut(s)	584
BpuMI	CCSGG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	658
BsaJI	CCNNGG	2 cut(s)	522, 536
BsaWI	WCCGGW	2 cut(s)	14, 333
Bse1I	ACTGG	2 cut(s)	627, 649
Bse21I	CCTNAGG	1 cut(s)	543
Bse3DI	GCAATG	1 cut(s)	372
BseAI	TCCGGA	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	522, 536
BseGI	GGATG	2 cut(s)	13, 166
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	4 cut(s)	170, 369, 534, 624
BseNI	ACTGG	2 cut(s)	627, 649
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	4 cut(s)	87, 109, 248, 660
BshFI	GGCC	1 cut(s)	541
BsiSI	CCGG	3 cut(s)	15, 243, 334
BsmAI	GTCTC	1 cut(s)	396
BsmI	GAATGC	2 cut(s)	263, 651
BsnI	GGCC	1 cut(s)	541
Bsp119I	TTCGAA	1 cut(s)	584
Bsp13I	TCCGGA	1 cut(s)	14
Bsp143I	GATC	3 cut(s)	340, 436, 627
BspACI	CCGC	1 cut(s)	602
BspANI	GGCC	1 cut(s)	541
BspCNI	CTCAG	4 cut(s)	169, 370, 535, 623
BspEI	TCCGGA	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	13, 193
BspMI	ACCTGC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	635
BspT104I	TTCGAA	1 cut(s)	584
BspTI	CTTAAG	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	627, 649
BssECI	CCNNGG	2 cut(s)	522, 536
BssMI	GATC	3 cut(s)	340, 436, 627
BssT1I	CCWWGG	1 cut(s)	536
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	500
Bst6I	CTCTTC	1 cut(s)	291
BstAFI	CTTAAG	1 cut(s)	227
BstBAI	YACGTR	1 cut(s)	658
BstBI	TTCGAA	1 cut(s)	584
BstC8I	GCNNGC	3 cut(s)	249, 266, 491
BstDEI	CTNAG	5 cut(s)	156, 344, 378, 543, 610
BstDSI	CCRYGG	1 cut(s)	522
BstF5I	GGATG	2 cut(s)	13, 166
BstKTI	GATC	3 cut(s)	343, 439, 630
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	3 cut(s)	340, 436, 627
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	1 cut(s)	168
BstPAI	GACNNNNGTC	1 cut(s)	334
BstSCI	CCNGG	2 cut(s)	25, 242
BstV1I	GCAGC	4 cut(s)	87, 109, 248, 660
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
Bsu36I	CCTNAGG	1 cut(s)	543
BsuRI	GGCC	1 cut(s)	541
BtgI	CCRYGG	1 cut(s)	522
BtsCI	GGATG	2 cut(s)	13, 166
BtsIMutI	CAGTG	1 cut(s)	620
BveI	ACCTGC	1 cut(s)	80
Cac8I	GCNNGC	3 cut(s)	249, 266, 491
CaiI	CAGNNNCTG	2 cut(s)	100, 131
CciI	TCATGA	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	4 cut(s)	165, 359, 397, 631
CviJI	RGCY	8 cut(s)	42, 100, 194, 251, 385, 493, 541, 551
CviKI_1	RGCY	8 cut(s)	42, 100, 194, 251, 385, 493, 541, 551
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	5 cut(s)	156, 344, 378, 543, 610
DpnI	GATC	3 cut(s)	342, 438, 629
DpnII	GATC	3 cut(s)	340, 436, 627
DraI	TTTAAA	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	536
Eco147I	AGGCCT	1 cut(s)	541
Eco81I	CCTNAGG	1 cut(s)	543
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	536
EcoT22I	ATGCAT	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	536
FaeI	CATG	4 cut(s)	168, 362, 400, 634
FaiI	YATR	9 cut(s)	119, 166, 174, 234, 307, 360, 398, 632, 664
FatI	CATG	4 cut(s)	164, 358, 396, 630
FauI	CCCGC	1 cut(s)	595
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	4 cut(s)	98, 101, 262, 649
FokI	GGATG	2 cut(s)	20, 173
Fsp4HI	GCNGC	4 cut(s)	98, 101, 262, 649
FspBI	CTAG	2 cut(s)	552, 567
GluI	GCNGC	4 cut(s)	98, 101, 262, 649
HaeIII	GGCC	1 cut(s)	541
HapII	CCGG	3 cut(s)	15, 243, 334
Hin1II	CATG	4 cut(s)	168, 362, 400, 634
HinfI	GANTC	4 cut(s)	179, 330, 404, 511
HpaII	CCGG	3 cut(s)	15, 243, 334
HphI	GGTGA	1 cut(s)	512
Hpy188I	TCNGA	3 cut(s)	112, 340, 460
Hpy188III	TCNNGA	5 cut(s)	15, 158, 359, 508, 612
HpyAV	CCTTC	1 cut(s)	429
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	5 cut(s)	149, 164, 203, 324, 634
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	5 cut(s)	156, 344, 378, 543, 610
HpySE526I	ACGT	1 cut(s)	657
Hsp92II	CATG	4 cut(s)	168, 362, 400, 634
Kpn2I	TCCGGA	1 cut(s)	14
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	3 cut(s)	340, 436, 627
LmnI	GCTCC	2 cut(s)	191, 382
Lsp1109I	GCAGC	4 cut(s)	87, 109, 248, 660
LweI	GCATC	5 cut(s)	45, 137, 151, 311, 380
MaeI	CTAG	2 cut(s)	552, 567
MaeII	ACGT	1 cut(s)	657
MaeIII	GTNAC	4 cut(s)	392, 500, 516, 605
MalI	GATC	3 cut(s)	342, 438, 629
MboI	GATC	3 cut(s)	340, 436, 627
MboII	GAAGA	1 cut(s)	278
MflI	RGATCY	1 cut(s)	340
MluCI	AATT	4 cut(s)	270, 441, 454, 576
MlyI	GAGTC	2 cut(s)	324, 398
MnlI	CCTC	4 cut(s)	294, 355, 373, 538
Mph1103I	ATGCAT	1 cut(s)	166
MroI	TCCGGA	1 cut(s)	14
MseI	TTAA	5 cut(s)	78, 228, 273, 425, 563
MspA1I	CMGCKG	1 cut(s)	100
MspCI	CTTAAG	1 cut(s)	227
MspI	CCGG	3 cut(s)	15, 243, 334
MspR9I	CCNGG	2 cut(s)	27, 244
Mva1269I	GAATGC	2 cut(s)	263, 651
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	200
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	3 cut(s)	340, 436, 627
NlaIII	CATG	4 cut(s)	168, 362, 400, 634
NlaIV	GGNNCC	2 cut(s)	13, 193
NmuCI	GTSAC	2 cut(s)	392, 500
NsiI	ATGCAT	1 cut(s)	166
NspI	RCATGY	1 cut(s)	168
NspV	TTCGAA	1 cut(s)	584
PagI	TCATGA	1 cut(s)	358
PceI	AGGCCT	1 cut(s)	541
PctI	GAATGC	2 cut(s)	263, 651
PfeI	GAWTC	2 cut(s)	179, 511
PfoI	TCCNGGA	1 cut(s)	25
PkrI	GCNGC	4 cut(s)	99, 102, 263, 650
PleI	GAGTC	2 cut(s)	324, 398
PpsI	GAGTC	2 cut(s)	324, 398
Ppu21I	YACGTR	1 cut(s)	658
PshAI	GACNNNNGTC	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	13, 193
PstNI	CAGNNNCTG	2 cut(s)	100, 131
PsuI	RGATCY	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SaqAI	TTAA	5 cut(s)	78, 228, 273, 425, 563
SatI	GCNGC	4 cut(s)	98, 101, 262, 649
Sau3AI	GATC	3 cut(s)	340, 436, 627
ScaI	AGTACT	1 cut(s)	154
SchI	GAGTC	2 cut(s)	324, 398
ScrFI	CCNGG	2 cut(s)	27, 244
SetI	ASST	9 cut(s)	94, 102, 217, 387, 436, 487, 549, 592, 660
SfaNI	GCATC	5 cut(s)	45, 137, 151, 311, 380
SfuI	TTCGAA	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	4 cut(s)	270, 441, 454, 576
SseBI	AGGCCT	1 cut(s)	541
SsiI	CCGC	1 cut(s)	602
SspMI	CTAG	2 cut(s)	552, 567
StuI	AGGCCT	1 cut(s)	541
StyD4I	CCNGG	2 cut(s)	25, 242
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	1 cut(s)	500
TaiI	ACGT	1 cut(s)	660
TaqI	TCGA	4 cut(s)	328, 374, 509, 584
TasI	AATT	4 cut(s)	270, 441, 454, 576
TatI	WGTACW	1 cut(s)	152
TfiI	GAWTC	2 cut(s)	179, 511
Tru1I	TTAA	5 cut(s)	78, 228, 273, 425, 563
Tru9I	TTAA	5 cut(s)	78, 228, 273, 425, 563
TscAI	CASTG	1 cut(s)	627
TseFI	GTSAC	2 cut(s)	392, 500
TseI	GCWGC	4 cut(s)	97, 100, 261, 648
Tsp45I	GTSAC	2 cut(s)	392, 500
TspRI	CASTG	1 cut(s)	627
Vha464I	CTTAAG	1 cut(s)	227
XapI	RAATTY	3 cut(s)	441, 454, 576
XceI	RCATGY	1 cut(s)	168
XspI	CTAG	2 cut(s)	552, 567
ZrmI	AGTACT	1 cut(s)	154
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.