Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002042

Physical Location & Seq

Genomic Coordinates Reverse (-)

20295895 .. 20301854

Gene Structure 5960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007719

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGCTCCTGCTTCGTCGCGGGTTTGGTAATTCGGGAGCGGACTTAGATGAAGCTCCTCATCAGAAATTCACGGCTCATTTGATTTGTAGACAGTTAATTGAGGCAAATGATGCAAATTTGCTTGACGAAGAAGATATGCATGTGTTTGATTTGGAGCCAATGGCTGATACTTTGCTTTTGGTTTGTTGCAATGCTTGTAAAAAACCAGTGAAGGCTAGCCAATATGCAGCCCATTCAGTACTCTGCAGGTCATTAAATTCTACGCAGGAAATTAATTTGGAGCTTAATGGAAGTATTGGGCAAAGGAAGCCTCCAAGGAAGGAGAAGAAAAAGTTATTAACTGCATATGCTCACCAGTCAACGTCAGTTAGAGAGCGACAAAGGTCTGAATCTGCAGATGATGTTGCTGTATCTCAACCTCAGTTGGATGGGAAAATAGGAATGAATTCTTCTTGTGGTATGGGCGCAAAGGGGAACTCAGCATCTGTAGAAACGACCTATATGATGGATGTTTCAGGAGTTACCCCTGAAAATACCAGTTGCTCAACAAGTCTGCTGCATCCTCCAACAAAACGATTTAAAATGATAGCAGGTGAGCAGCCACCACTATCAGATGATCTGGGAACAACATCTATTGTATCAGAACTCAAAAGTACTCAGGAAGCATGTCCATACTGTCCTGTTCCCCTTGCTACTAAAGTATATTACTCACAAAGAAGTAATCGGCTCCGTACAGCACTTTGTCATCTGTACCCTGAGGCAGTGGCATCAAATAAGGAGCTTTGCACTGTCATGAGGGACGAACAGTCTTTGCCTTCTATACAAACACCTGATCAAATTCTCGCACAAAATTCAGAAGCTTGCTTGGAGAAATCAATAGGCTCCCTCCCTGCTGGTGACCTATCAAACCAGTTTCCCATTGATAATGTTCCGAGGCCTGCAGGTGTTGGTTTGACAAGAAGCAAACTTCTATCAAAACCTTATTCTTTTGCGGGTAGCTCAGGACAAACGCTGGGAACCATGCAACAGCGAAATGGCAGAGTTCCTGTTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sgf11

Protein Analysis

352

Amino Acids

38.11

Weight (kDa)

7.02

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002042)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160
malus_domestica	MD13G1174200.v1.1 MD16G1175500.v1.1 MD16G1175700.v1.1
prunus_persica	Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1
pyrus_communis	pycom13g14980 pycom16g14720
rosa_chinensis	RchiOBHm_Chr4g0420931
rosa_laevigata	RLG00000007719
rosa_multiflora	Rmu_sc0002006.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363310
rosa_rugosa	Rorug04G0167100 Rorug04G0167200
rosa_samantha	Rh4AG228400 Rh4BG231600 Rh4CG243300 Rh4DG227000
rosa_wichuraiana	Rw4G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	581, 932
Acc36I	ACCTGC	3 cut(s)	237, 581, 932
AccBSI	CCGCTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	88
AccII	CGCG	1 cut(s)	18
AciI	CCGC	3 cut(s)	18, 38, 992
AcsI	RAATTY	6 cut(s)	65, 115, 256, 445, 837, 850
AfaI	GTAC	4 cut(s)	240, 655, 733, 752
AhdI	GACNNNNNGTC	1 cut(s)	805
AluBI	AGCT	5 cut(s)	53, 283, 781, 860, 999
AluI	AGCT	5 cut(s)	53, 283, 781, 860, 999
AlwNI	CAGNNNCTG	1 cut(s)	485
AoxI	GGCC	1 cut(s)	935
ApeKI	GCWGC	3 cut(s)	227, 556, 598
ApoI	RAATTY	6 cut(s)	65, 115, 256, 445, 837, 850
AseI	ATTAAT	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	445
AspLEI	GCGC	1 cut(s)	467
AsuHPI	GGTGA	3 cut(s)	344, 605, 908
AsuNHI	GCTAGC	1 cut(s)	215
AxyI	CCTNAGG	1 cut(s)	756
BbvI	GCAGC	3 cut(s)	239, 543, 610
BccI	CCATC	2 cut(s)	422, 499
BceAI	ACGGC	1 cut(s)	87
BclI	TGATCA	1 cut(s)	832
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	4 cut(s)	244, 393, 486, 939
BfuAI	ACCTGC	3 cut(s)	237, 581, 932
BisI	GCNGC	3 cut(s)	228, 557, 599
BlsI	GCNGC	3 cut(s)	229, 558, 600
BmcAI	AGTACT	2 cut(s)	240, 655
BmeRI	GACNNNNNGTC	1 cut(s)	805
BmiI	GGNNCC	4 cut(s)	156, 728, 883, 1018
BmsI	GCATC	4 cut(s)	100, 491, 568, 776
BmtI	GCTAGC	1 cut(s)	219
BoxI	GACNNNNGTC	1 cut(s)	382
Bpu10I	CCTNAGC	1 cut(s)	1000
BsaJI	CCNNGG	2 cut(s)	314, 932
Bse1I	ACTGG	4 cut(s)	206, 355, 537, 910
Bse21I	CCTNAGG	1 cut(s)	756
Bse3DI	GCAATG	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	314, 932
BseGI	GGATG	3 cut(s)	433, 514, 559
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	5 cut(s)	434, 492, 671, 747, 1014
BseNI	ACTGG	4 cut(s)	206, 355, 537, 910
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	239, 543, 610
BseYI	CCCAGC	1 cut(s)	1012
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	937
BslFI	GGGAC	1 cut(s)	812
BsmFI	GGGAC	1 cut(s)	812
BsnI	GGCC	1 cut(s)	937
Bsp143I	GATC	2 cut(s)	616, 832
BspACI	CCGC	3 cut(s)	18, 38, 992
BspANI	GGCC	1 cut(s)	937
BspCNI	CTCAG	5 cut(s)	433, 491, 670, 748, 1013
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	792
BspLI	GGNNCC	4 cut(s)	156, 728, 883, 1018
BspMAI	CTGCAG	3 cut(s)	248, 397, 943
BspMI	ACCTGC	3 cut(s)	237, 581, 932
BspOI	GCTAGC	1 cut(s)	219
BsrBI	CCGCTC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	196
BsrI	ACTGG	4 cut(s)	206, 355, 537, 910
BssECI	CCNNGG	2 cut(s)	314, 932
BssMI	GATC	2 cut(s)	616, 832
BssT1I	CCWWGG	1 cut(s)	314
Bst4CI	ACNGT	4 cut(s)	93, 677, 790, 807
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	217, 862, 939
BstDEI	CTNAG	6 cut(s)	43, 420, 478, 657, 756, 1000
BstEII	GGTNACC	1 cut(s)	896
BstF5I	GGATG	3 cut(s)	433, 514, 559
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	2 cut(s)	619, 835
BstMBI	GATC	2 cut(s)	616, 832
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 307
BstNSI	RCATGY	2 cut(s)	143, 669
BstPAI	GACNNNNGTC	1 cut(s)	382
BstPI	GGTNACC	1 cut(s)	896
BstSFI	CTRYAG	4 cut(s)	244, 393, 486, 939
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	3 cut(s)	239, 543, 610
Bsu36I	CCTNAGG	1 cut(s)	756
BsuRI	GGCC	1 cut(s)	937
BtsCI	GGATG	3 cut(s)	433, 514, 559
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	3 cut(s)	213, 768, 786
BveI	ACCTGC	3 cut(s)	237, 581, 932
Cac8I	GCNNGC	3 cut(s)	217, 862, 939
CaiI	CAGNNNCTG	1 cut(s)	485
CciI	TCATGA	1 cut(s)	792
CfoI	GCGC	1 cut(s)	467
Csp6I	GTAC	4 cut(s)	239, 654, 732, 751
CviAII	CATG	4 cut(s)	140, 666, 793, 1021
CviQI	GTAC	4 cut(s)	239, 654, 732, 751
DdeI	CTNAG	6 cut(s)	43, 420, 478, 657, 756, 1000
DpnI	GATC	2 cut(s)	618, 834
DpnII	GATC	2 cut(s)	616, 832
DraI	TTTAAA	1 cut(s)	580
DriI	GACNNNNNGTC	1 cut(s)	805
Eam1105I	GACNNNNNGTC	1 cut(s)	805
Eco130I	CCWWGG	1 cut(s)	314
Eco147I	AGGCCT	1 cut(s)	937
Eco81I	CCTNAGG	1 cut(s)	756
Eco91I	GGTNACC	1 cut(s)	896
EcoO65I	GGTNACC	1 cut(s)	896
EcoRI	GAATTC	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	314
EcoT22I	ATGCAT	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	4 cut(s)	143, 669, 796, 1024
FaqI	GGGAC	1 cut(s)	812
FatI	CATG	4 cut(s)	139, 665, 792, 1020
FauI	CCCGC	2 cut(s)	11, 985
FauNDI	CATATG	1 cut(s)	346
FbaI	TGATCA	1 cut(s)	832
FblI	GTMKAC	1 cut(s)	88
Fnu4HI	GCNGC	3 cut(s)	228, 557, 599
FokI	GGATG	3 cut(s)	440, 521, 546
Fsp4HI	GCNGC	3 cut(s)	228, 557, 599
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	3 cut(s)	228, 557, 599
GsaI	CCCAGC	1 cut(s)	1016
HaeIII	GGCC	1 cut(s)	937
HhaI	GCGC	1 cut(s)	467
Hin1II	CATG	4 cut(s)	143, 669, 796, 1024
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HindIII	AAGCTT	1 cut(s)	858
HinfI	GANTC	1 cut(s)	389
HphI	GGTGA	3 cut(s)	344, 605, 908
Hpy166II	GTNNAC	2 cut(s)	89, 360
Hpy188I	TCNGA	6 cut(s)	63, 388, 613, 643, 856, 933
Hpy188III	TCNNGA	5 cut(s)	33, 516, 659, 793, 1002
Hpy8I	GTNNAC	2 cut(s)	89, 360
Hpy99I	CGWCG	1 cut(s)	18
HpyAV	CCTTC	3 cut(s)	205, 313, 825
HpyCH4III	ACNGT	4 cut(s)	93, 677, 790, 807
HpyCH4IV	ACGT	1 cut(s)	362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 307
HpyF3I	CTNAG	6 cut(s)	43, 420, 478, 657, 756, 1000
HpySE526I	ACGT	1 cut(s)	362
Hsp92II	CATG	4 cut(s)	143, 669, 796, 1024
HspAI	GCGC	1 cut(s)	465
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	2 cut(s)	616, 832
LmnI	GCTCC	8 cut(s)	9, 35, 58, 154, 280, 732, 778, 887
Lsp1109I	GCAGC	3 cut(s)	239, 543, 610
LweI	GCATC	4 cut(s)	100, 491, 568, 776
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	362
MaeIII	GTNAC	2 cut(s)	520, 896
MalI	GATC	2 cut(s)	618, 834
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	2 cut(s)	616, 832
MboII	GAAGA	4 cut(s)	140, 143, 337, 441
MmeI	TCCRAC	2 cut(s)	405, 590
MnlI	CCTC	9 cut(s)	66, 94, 321, 429, 573, 751, 789, 896, 927
Mph1103I	ATGCAT	1 cut(s)	141
MroXI	GAANNNNTTC	1 cut(s)	445
MseI	TTAA	6 cut(s)	95, 254, 273, 285, 338, 579
MslI	CAYNNNNRTG	1 cut(s)	791
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	110, 307
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	2 cut(s)	616, 832
NheI	GCTAGC	1 cut(s)	215
NlaIII	CATG	4 cut(s)	143, 669, 796, 1024
NlaIV	GGNNCC	4 cut(s)	156, 728, 883, 1018
NmuCI	GTSAC	1 cut(s)	896
NsiI	ATGCAT	1 cut(s)	141
NspI	RCATGY	2 cut(s)	143, 669
PagI	TCATGA	1 cut(s)	792
PaqCI	CACCTGC	2 cut(s)	581, 932
PceI	AGGCCT	1 cut(s)	937
PdmI	GAANNNNTTC	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	3 cut(s)	229, 558, 600
PshAI	GACNNNNGTC	1 cut(s)	382
PshBI	ATTAAT	1 cut(s)	273
PspEI	GGTNACC	1 cut(s)	896
PspFI	CCCAGC	1 cut(s)	1012
PspN4I	GGNNCC	4 cut(s)	156, 728, 883, 1018
PstI	CTGCAG	3 cut(s)	248, 397, 943
PstNI	CAGNNNCTG	1 cut(s)	485
RsaI	GTAC	4 cut(s)	240, 655, 733, 752
RsaNI	GTAC	4 cut(s)	239, 654, 732, 751
RseI	CAYNNNNRTG	1 cut(s)	791
SaqAI	TTAA	6 cut(s)	95, 254, 273, 285, 338, 579
SatI	GCNGC	3 cut(s)	228, 557, 599
Sau3AI	GATC	2 cut(s)	616, 832
SbfI	CCTGCAGG	1 cut(s)	943
ScaI	AGTACT	2 cut(s)	240, 655
SdaI	CCTGCAGG	1 cut(s)	943
SfaNI	GCATC	4 cut(s)	100, 491, 568, 776
SfcI	CTRYAG	4 cut(s)	244, 393, 486, 939
SmiMI	CAYNNNNRTG	1 cut(s)	791
Sse8387I	CCTGCAGG	1 cut(s)	943
SseBI	AGGCCT	1 cut(s)	937
SsiI	CCGC	3 cut(s)	18, 38, 992
SspMI	CTAG	1 cut(s)	216
StuI	AGGCCT	1 cut(s)	937
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	4 cut(s)	93, 677, 790, 807
TaiI	ACGT	1 cut(s)	365
TatI	WGTACW	2 cut(s)	238, 653
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	6 cut(s)	95, 254, 273, 285, 338, 579
Tru9I	TTAA	6 cut(s)	95, 254, 273, 285, 338, 579
TscAI	CASTG	3 cut(s)	213, 768, 793
TseFI	GTSAC	1 cut(s)	896
TseI	GCWGC	3 cut(s)	227, 556, 598
Tsp45I	GTSAC	1 cut(s)	896
TspDTI	ATGAA	2 cut(s)	63, 458
TspGWI	ACGGA	1 cut(s)	719
TspRI	CASTG	3 cut(s)	213, 768, 793
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	6 cut(s)	65, 115, 256, 445, 837, 850
XceI	RCATGY	2 cut(s)	143, 669
XmiI	GTMKAC	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	445
XspI	CTAG	1 cut(s)	216
ZrmI	AGTACT	2 cut(s)	240, 655
Zsp2I	ATGCAT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.