Prupe.1G142600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0002042
Physical Location & Seq
Reverse (-)
11209601 .. 11217202
7602 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G142600.9

Sequence Viewer

Length: 1230 bp
ATGGTATGCTCACTTGGAAGTGGGAGGATGGCAGTGATGGCAAGGCTTCTTGCATCGGGGAGTGTCACACAAAGCATAGCAGAGGAAGTTGGCCATCAGAAGTTTGATGCTCAAATGATTTGCAGAGAGTTAAGTGACGCGAATGAAGCAAATTTGCTTGACGAAGAAGATATGCATGTGTTTGGTTTGAAGCCGATGGATGATCCTTTGCATTTGGTATGTTGCAATGCTTGTAAAAGACCAGTCAAGGCCAGTCAATATGTGGAACATGCAGAACTTTGTAGGTCATTAAATGCTATGCAAGAAACTACTTTGGAGCCTGATGGAAGTATGGGACAAAGGAAACCTCCAAGGAAGGAGAAGAAAAAGTTGTTAACTGCTTATGCTAACCAGTCCACATCAGTTGGGGAGCTAGAAAGATCTGAGTCTGTAGAAGCAGATGATATTGCTGTATCACAACCCCAGTTGGATGGGCAAATCGGAATGAATTCTTGCTGTTTTATGGAGACAAAAAGGAATTCAGCTTATGTAGATGCGACATATATGATGGATGGTTCAGGAGTTAGTCCTGGAAATACCAATGGCTCAACATGTGTGATGCTTCCTCCAACAAAACGGTCTAAAATGGTAGCAGGTGAGCAGCTGCCACTATCAGATGATATAGGAATAGTATCTGCTGTATCAAAACTTACAAGCACTCAGGATGCATGCCCCTATAGGGATTCTTCAAAAGGAGTCATTTCTGTAAGTGACATACCTAATGACTCTGCCCTTAAATATAAGAAGTCTGGGCAAGCCCTTGAATGCTGCATGCCAATTAAAGATTGCCCTCTTCCCCTTGCTACTAAAGTATATTACTCTCAAAAAAGCAATCGTCTTCGATCAGCACTTTGCCATCTTTACCATGAGGCAGTGGCATCAACTAAGGAGCTGTGTAGTGACATGATACTTATTGCAAAACAGAGAGACTCACAGTCTTTACCTTCCATGAGGAAACCTGATCAAATTCTTGCCCAAAATTCAGAAGTTTGCTTGGGGAACTCAGTAGGTTCCCTGCCTGATGGCGACTTCTCAAATCAGTTTCCTGTTGATAATGTTCCAAGGCCTCAGGTTGCTGGTGTTGGTTTAACAAGAAGCAAAATTCTTTCAAAACCTTATTCTTTTGCGGGTAGCTCAGGACAATCACTGGGGACCATGCAACAGCAAAATGGTAGTGTTCACGTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sgf11

Protein Analysis

410

Amino Acids

44.18

Weight (kDa)

6.03

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 623
Acc36I ACCTGC 1 cut(s) 623
AccII CGCG 1 cut(s) 140
AciI CCGC 1 cut(s) 1166
AclWI GGATC 1 cut(s) 197
AcoI YGGCCR 1 cut(s) 91
AcsI RAATTY 6 cut(s) 151, 487, 517, 1005, 1018, 1140
AfiI CCNNNNNNNGG 1 cut(s) 718
AflIII ACRYGT 1 cut(s) 590
AgsI TTSAA 4 cut(s) 190, 729, 803, 1149
AhdI GACNNNNNGTC 1 cut(s) 973
AjnI CCWGG 1 cut(s) 568
AluBI AGCT 5 cut(s) 412, 524, 643, 931, 1173
AluI AGCT 5 cut(s) 412, 524, 643, 931, 1173
Alw26I GTCTC 2 cut(s) 500, 960
AlwI GGATC 1 cut(s) 197
AoxI GGCC 3 cut(s) 91, 249, 1103
ApeKI GCWGC 3 cut(s) 640, 643, 807
ApoI RAATTY 6 cut(s) 151, 487, 517, 1005, 1018, 1140
Asp700I GAANNNNTTC 1 cut(s) 487
AspS9I GGNCC 1 cut(s) 1191
AsuHPI GGTGA 1 cut(s) 647
AvaII GGWCC 1 cut(s) 1191
AxyI CCTNAGG 1 cut(s) 1107
BalI TGGCCA 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 869
BbvI GCAGC 3 cut(s) 630, 652, 794
BciT130I CCWGG 1 cut(s) 570
BclI TGATCA 1 cut(s) 1000
BcoDI GTCTC 2 cut(s) 500, 960
BfaI CTAG 1 cut(s) 413
BfmI CTRYAG 2 cut(s) 429, 715
BfuAI ACCTGC 1 cut(s) 623
BglII AGATCT 1 cut(s) 419
BisI GCNGC 3 cut(s) 641, 644, 808
BlsI GCNGC 3 cut(s) 642, 645, 809
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 1 cut(s) 1191
BmeRI GACNNNNNGTC 1 cut(s) 973
BmgT120I GGNCC 1 cut(s) 1191
BmiI GGNNCC 3 cut(s) 318, 1051, 1192
BmrFI CCNGG 1 cut(s) 570
BmrI ACTGGG 2 cut(s) 457, 1196
BmsI GCATC 6 cut(s) 62, 97, 523, 588, 694, 926
BmuI ACTGGG 2 cut(s) 457, 1196
BpiI GAAGAC 1 cut(s) 869
Bpu10I CCTNAGC 1 cut(s) 1174
BsaJI CCNNGG 2 cut(s) 350, 1100
Bsc4I CCNNNNNNNGG 1 cut(s) 718
Bse1I ACTGG 5 cut(s) 242, 252, 391, 463, 1191
Bse21I CCTNAGG 1 cut(s) 1107
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 2 cut(s) 350, 1100
BseGI GGATG 5 cut(s) 33, 205, 475, 556, 709
BseLI CCNNNNNNNGG 1 cut(s) 718
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 5 cut(s) 414, 713, 1056, 1121, 1188
BseNI ACTGG 5 cut(s) 242, 252, 391, 463, 1191
BseXI GCAGC 3 cut(s) 630, 652, 794
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 3 cut(s) 93, 251, 1105
BslFI GGGAC 2 cut(s) 348, 1204
BslI CCNNNNNNNGG 1 cut(s) 718
BsmAI GTCTC 2 cut(s) 500, 960
BsmFI GGGAC 2 cut(s) 348, 1204
BsmI GAATGC 1 cut(s) 809
BsnI GGCC 3 cut(s) 93, 251, 1105
Bsp143I GATC 4 cut(s) 202, 419, 881, 1000
BspACI CCGC 1 cut(s) 1166
BspANI GGCC 3 cut(s) 93, 251, 1105
BspCNI CTCAG 5 cut(s) 415, 712, 1055, 1120, 1187
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 3 cut(s) 318, 1051, 1192
BspMI ACCTGC 1 cut(s) 623
BspPI GGATC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 232
BsrI ACTGG 5 cut(s) 242, 252, 391, 463, 1191
BssECI CCNNGG 2 cut(s) 350, 1100
BssMI GATC 4 cut(s) 202, 419, 881, 1000
BssT1I CCWWGG 2 cut(s) 350, 1100
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 2 cut(s) 618, 975
Bst6I CTCTTC 1 cut(s) 837
BstC8I GCNNGC 3 cut(s) 709, 795, 812
BstDEI CTNAG 6 cut(s) 423, 699, 924, 1042, 1107, 1174
BstF5I GGATG 5 cut(s) 33, 205, 475, 556, 709
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 4 cut(s) 205, 422, 884, 1003
BstMAI GTCTC 2 cut(s) 500, 960
BstMBI GATC 4 cut(s) 202, 419, 881, 1000
BstMWI GCNNNNNNNGC 2 cut(s) 38, 146
BstNI CCWGG 1 cut(s) 570
BstNSI RCATGY 5 cut(s) 179, 272, 594, 711, 814
BstSCI CCNGG 1 cut(s) 568
BstSFI CTRYAG 2 cut(s) 429, 715
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 3 cut(s) 630, 652, 794
BstV2I GAAGAC 1 cut(s) 869
BstX2I RGATCY 1 cut(s) 419
BstXI CCANNNNNNTGG 1 cut(s) 470
BstYI RGATCY 1 cut(s) 419
Bsu36I CCTNAGG 1 cut(s) 1107
BsuRI GGCC 3 cut(s) 93, 251, 1105
BtsCI GGATG 5 cut(s) 33, 205, 475, 556, 709
BtsI GCAGTG 2 cut(s) 39, 918
BtsIMutI CAGTG 3 cut(s) 39, 918, 1184
BveI ACCTGC 1 cut(s) 623
Cac8I GCNNGC 3 cut(s) 709, 795, 812
Cfr13I GGNCC 1 cut(s) 1191
CseI GACGC 1 cut(s) 146
CspCI CAANNNNNGTGG 2 cut(s) 385, 420
CviAII CATG 9 cut(s) 176, 269, 591, 708, 811, 905, 943, 988, 1195
DdeI CTNAG 6 cut(s) 423, 699, 924, 1042, 1107, 1174
DpnI GATC 4 cut(s) 204, 421, 883, 1002
DpnII GATC 4 cut(s) 202, 419, 881, 1000
DriI GACNNNNNGTC 1 cut(s) 973
EaeI YGGCCR 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 837
Eam1105I GACNNNNNGTC 1 cut(s) 973
EarI CTCTTC 1 cut(s) 837
Eco130I CCWWGG 2 cut(s) 350, 1100
Eco147I AGGCCT 1 cut(s) 1105
Eco47I GGWCC 1 cut(s) 1191
Eco81I CCTNAGG 1 cut(s) 1107
EcoRI GAATTC 2 cut(s) 487, 517
EcoRII CCWGG 1 cut(s) 568
EcoT14I CCWWGG 2 cut(s) 350, 1100
EcoT22I ATGCAT 2 cut(s) 177, 709
ErhI CCWWGG 2 cut(s) 350, 1100
FaeI CATG 9 cut(s) 179, 272, 594, 711, 814, 908, 946, 991, 1198
FaqI GGGAC 2 cut(s) 348, 1204
FatI CATG 9 cut(s) 175, 268, 590, 707, 810, 904, 942, 987, 1194
FauI CCCGC 1 cut(s) 1159
FbaI TGATCA 1 cut(s) 1000
Fnu4HI GCNGC 3 cut(s) 641, 644, 808
FokI GGATG 5 cut(s) 40, 212, 482, 563, 716
Fsp4HI GCNGC 3 cut(s) 641, 644, 808
FspBI CTAG 1 cut(s) 413
GluI GCNGC 3 cut(s) 641, 644, 808
HaeIII GGCC 3 cut(s) 93, 251, 1105
HgaI GACGC 1 cut(s) 146
Hin1II CATG 9 cut(s) 179, 272, 594, 711, 814, 908, 946, 991, 1198
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HinfI GANTC 5 cut(s) 425, 722, 735, 764, 968
HpaI GTTAAC 1 cut(s) 375
HphI GGTGA 1 cut(s) 647
Hpy166II GTNNAC 3 cut(s) 375, 396, 1219
Hpy188I TCNGA 5 cut(s) 99, 424, 482, 655, 1024
Hpy188III TCNNGA 3 cut(s) 558, 701, 1176
Hpy8I GTNNAC 3 cut(s) 375, 396, 1219
HpyAV CCTTC 2 cut(s) 349, 993
HpyCH4III ACNGT 2 cut(s) 618, 975
HpyCH4IV ACGT 1 cut(s) 1221
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 146
HpyF3I CTNAG 6 cut(s) 423, 699, 924, 1042, 1107, 1174
HpySE526I ACGT 1 cut(s) 1221
Hsp92II CATG 9 cut(s) 179, 272, 594, 711, 814, 908, 946, 991, 1198
Ksp22I TGATCA 1 cut(s) 1000
KspAI GTTAAC 1 cut(s) 375
Kzo9I GATC 4 cut(s) 202, 419, 881, 1000
LmnI GCTCC 3 cut(s) 316, 409, 928
Lsp1109I GCAGC 3 cut(s) 630, 652, 794
LweI GCATC 6 cut(s) 62, 97, 523, 588, 694, 926
MaeI CTAG 1 cut(s) 413
MaeII ACGT 1 cut(s) 1221
MaeIII GTNAC 4 cut(s) 64, 134, 749, 938
MalI GATC 4 cut(s) 204, 421, 883, 1002
MboI GATC 4 cut(s) 202, 419, 881, 1000
MboII GAAGA 6 cut(s) 176, 179, 373, 717, 824, 869
MflI RGATCY 1 cut(s) 419
MlsI TGGCCA 1 cut(s) 93
MluCI AATT 7 cut(s) 151, 487, 517, 816, 1005, 1018, 1140
MluNI TGGCCA 1 cut(s) 93
MlyI GAGTC 4 cut(s) 434, 744, 758, 962
MmeI TCCRAC 2 cut(s) 447, 632
MnlI CCTC 8 cut(s) 18, 76, 357, 615, 840, 901, 984, 1116
Mox20I TGGCCA 1 cut(s) 93
Mph1103I ATGCAT 2 cut(s) 177, 709
MroXI GAANNNNTTC 1 cut(s) 487
MscI TGGCCA 1 cut(s) 93
MseI TTAA 6 cut(s) 131, 290, 374, 774, 819, 1127
Msp20I TGGCCA 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 643
MspR9I CCNGG 1 cut(s) 570
Mva1269I GAATGC 1 cut(s) 809
MvaI CCWGG 1 cut(s) 570
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 38, 146
NdeII GATC 4 cut(s) 202, 419, 881, 1000
NlaIII CATG 9 cut(s) 179, 272, 594, 711, 814, 908, 946, 991, 1198
NlaIV GGNNCC 3 cut(s) 318, 1051, 1192
NmuCI GTSAC 4 cut(s) 64, 134, 749, 938
NsiI ATGCAT 2 cut(s) 177, 709
NspI RCATGY 5 cut(s) 179, 272, 594, 711, 814
PaeI GCATGC 2 cut(s) 711, 814
PaqCI CACCTGC 1 cut(s) 623
PceI AGGCCT 1 cut(s) 1105
PciI ACATGT 1 cut(s) 590
PctI GAATGC 1 cut(s) 809
PdmI GAANNNNTTC 1 cut(s) 487
PfeI GAWTC 1 cut(s) 722
PfoI TCCNGGA 1 cut(s) 568
PkrI GCNGC 3 cut(s) 642, 645, 809
PleI GAGTC 4 cut(s) 433, 743, 758, 962
PpsI GAGTC 4 cut(s) 433, 743, 758, 962
PscI ACATGT 1 cut(s) 590
Psp6I CCWGG 1 cut(s) 568
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 3 cut(s) 318, 1051, 1192
PspPI GGNCC 1 cut(s) 1191
PsuI RGATCY 1 cut(s) 419
PvuII CAGCTG 1 cut(s) 643
SaqAI TTAA 6 cut(s) 131, 290, 374, 774, 819, 1127
SatI GCNGC 3 cut(s) 641, 644, 808
Sau3AI GATC 4 cut(s) 202, 419, 881, 1000
Sau96I GGNCC 1 cut(s) 1191
SchI GAGTC 4 cut(s) 434, 744, 758, 962
ScrFI CCNGG 1 cut(s) 570
SfaNI GCATC 6 cut(s) 62, 97, 523, 588, 694, 926
SfcI CTRYAG 2 cut(s) 429, 715
SinI GGWCC 1 cut(s) 1191
SphI GCATGC 2 cut(s) 711, 814
Sse9I AATT 7 cut(s) 151, 487, 517, 816, 1005, 1018, 1140
SseBI AGGCCT 1 cut(s) 1105
SsiI CCGC 1 cut(s) 1166
SspMI CTAG 1 cut(s) 413
StuI AGGCCT 1 cut(s) 1105
StyD4I CCNGG 1 cut(s) 568
StyI CCWWGG 2 cut(s) 350, 1100
TaaI ACNGT 2 cut(s) 618, 975
TaiI ACGT 1 cut(s) 1224
TaqI TCGA 1 cut(s) 880
TasI AATT 7 cut(s) 151, 487, 517, 816, 1005, 1018, 1140
TfiI GAWTC 1 cut(s) 722
Tru1I TTAA 6 cut(s) 131, 290, 374, 774, 819, 1127
Tru9I TTAA 6 cut(s) 131, 290, 374, 774, 819, 1127
TscAI CASTG 3 cut(s) 39, 918, 1191
TseFI GTSAC 4 cut(s) 64, 134, 749, 938
TseI GCWGC 3 cut(s) 640, 643, 807
Tsp45I GTSAC 4 cut(s) 64, 134, 749, 938
TspDTI ATGAA 2 cut(s) 159, 500
TspRI CASTG 3 cut(s) 39, 918, 1191
VpaK11BI GGWCC 1 cut(s) 1191
XapI RAATTY 6 cut(s) 151, 487, 517, 1005, 1018, 1140
XceI RCATGY 5 cut(s) 179, 272, 594, 711, 814
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 487
XspI CTAG 1 cut(s) 413
Zsp2I ATGCAT 2 cut(s) 177, 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.