Rorug04G0167200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002042
Physical Location & Seq
Forward (+)
29329757 .. 29331441
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0167200.1

Sequence Viewer

Length: 1416 bp
ATGGCTTCCATGAACATTCACATGCCCAACACAAACTTAAACCATGTTGCATTTTCCGAAACCACTCGGCCGCTGCGGTCGGTTTGTATCGGGCAGGTTTGTCTGCCCAAACGAACCAAATTAGCAACAGCTTCTCCTACAAAACAAACGGTTGTCGCATCTCCGGTGGTCATTGAAGTAGCAGCTAGAGCTAGCTCTGGTTCTAGTACTAGTACTACTTCTTTGTCTCATTCGTGGAGAGAGATTCAAGGCTCCGACAACTGGGAAAATCTAGTAGACCCATTGCACCCTCTTCTCCGGCAAGAGATAATCCGGTACGGCGACTTTGTAAAGGCGTGTTACAACGCTTTCGACCTGGACCCCAATTCGAAACGCTACCTCAACTGCAAGTACAGCAAGAGAAACATGCTGAGAGAGATTGGGATGGAGAGCAGCGGCTATGAAGTCACCAAGTACATCTATGCTACCCCCGACATCAACATTCCCATCCAAAACGGCGAGTCGTGCGGACGCTGGATCGGATATGTGGCCGTTGCCACTGACGAAGCGGTGAAGCGGCTAGGAAGGAGAGATATTATCATCACCTTCCGAGGCACGGTTACAAACCCTGAGTGGGTGGCAAACCTAATGAGCTCCCTCACTCCGGCAAGGCTTGATCCTCATAATGAACGGCCTGATGTGAAAGTAGAGTCTGGGTTTCTCAGCTTGTACACGTCCGATGAAAGCGACAGTAGGTTCGGGCTAGGAAGTTGCCGGGAGCAGCTTCTTTCCGAAGTGTCGAGGCTACTAAACAAGTACAAAGGCGAGGAGTTAAGCATAACCTTAGCAGGACACAGCATGGGAAGTTCTCTGGCTCTTCTTCTCGCTTACGACATCACGGAGCTAGGGTTGAATCGTGTCAATTCGAGCATGAAAACACCCGTCACCGTGTTTTCCTTCGGAGGCCCCAGAGTTGGGAACCCCGGGTTCAAGATGCGATGTGAAGAGTTGGGTGTCAAAGTGTTGAGGATAGTAAACGTGAACGATCCGATCACAAAGATGCCCGGAATGGTGTTCAATCATGAGAATTTTAGGGTTTTGGGCAGTGAGCGATTGTCATTTGAGTTCCCTTGGAGTTGCTCCTGTTATGCACATGTTGGTGTTGAATTGGTGCTTGATTTCTTCAACATGCAAAACCCTTCGTGTGTTCATGATCTGGGGACTTATATCAGCTTGCTCAAATGCCCCAAGAGACCATCAATGGAGAGTCAGAGAGACAATCAAGGTGGGGATTTTGTGAACAAGGCAAAAGTATTGCTCTCGAATATAATTAGTGCGCAAAATTTGAATCTGCAGCTACCAATCCCATGGAGAAGTAGTAGTACTACTGCTGAAAGCAATATGGTGAATCTGCAGGTTCAATCACAAAGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sgf11

Protein Analysis

471

Amino Acids

52.43

Weight (kDa)

8.55

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 194 - 351 3e-36 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1317
Acc36I ACCTGC 2 cut(s) 85, 1384
AccI GTMKAC 1 cut(s) 276
AciI CCGC 6 cut(s) 71, 76, 435, 507, 548, 556
AclWI GGATC 3 cut(s) 524, 650, 1019
AcoI YGGCCR 2 cut(s) 68, 528
AcsI RAATTY 2 cut(s) 1066, 1321
AfaI GTAC 8 cut(s) 208, 214, 317, 392, 455, 710, 797, 1363
AfiI CCNNNNNNNGG 6 cut(s) 261, 595, 613, 643, 953, 954
AflIII ACRYGT 2 cut(s) 711, 1132
AgsI TTSAA 9 cut(s) 176, 248, 892, 970, 1057, 1145, 1165, 1327, 1400
AhlI ACTAGT 1 cut(s) 209
AjiI CACGTC 1 cut(s) 714
AjnI CCWGG 1 cut(s) 354
Alw21I GWGCWC 1 cut(s) 635
Alw26I GTCTC 3 cut(s) 231, 1225, 1248
AlwI GGATC 3 cut(s) 524, 650, 1019
Ama87I CYCGRG 1 cut(s) 962
AoxI GGCC 4 cut(s) 68, 528, 671, 943
ApeKI GCWGC 5 cut(s) 73, 182, 432, 760, 1333
ApoI RAATTY 2 cut(s) 1066, 1321
ArsI GACNNNNNNTTYG 2 cut(s) 719, 751
AspLEI GCGC 1 cut(s) 1318
AspS9I GGNCC 2 cut(s) 358, 944
AsuC2I CCSGG 4 cut(s) 755, 963, 964, 1044
AsuHPI GGTGA 5 cut(s) 439, 562, 574, 916, 1396
AsuII TTCGAA 1 cut(s) 368
AsuNHI GCTAGC 1 cut(s) 191
AvaI CYCGRG 1 cut(s) 962
AvaII GGWCC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 635
BarI GAAGNNNNNNTAC 2 cut(s) 1345, 1377
Bbv12I GWGCWC 1 cut(s) 635
BbvI GCAGC 5 cut(s) 60, 194, 444, 772, 1345
BccI CCATC 3 cut(s) 418, 494, 1243
BceAI ACGGC 4 cut(s) 334, 511, 515, 686
BciT130I CCWGG 1 cut(s) 356
BcnI CCSGG 4 cut(s) 755, 963, 964, 1044
BcoDI GTCTC 3 cut(s) 231, 1225, 1248
BcuI ACTAGT 1 cut(s) 209
BfaI CTAG 8 cut(s) 186, 192, 204, 210, 272, 560, 743, 884
BfmI CTRYAG 2 cut(s) 1331, 1391
BfuAI ACCTGC 2 cut(s) 85, 1384
BisI GCNGC 8 cut(s) 71, 74, 183, 433, 436, 557, 761, 1334
BlsI GCNGC 8 cut(s) 72, 75, 184, 434, 437, 558, 762, 1335
BmcAI AGTACT 3 cut(s) 208, 214, 1363
Bme1390I CCNGG 5 cut(s) 356, 755, 963, 964, 1044
Bme18I GGWCC 1 cut(s) 358
BmeT110I CYCGRG 1 cut(s) 962
BmgBI CACGTC 1 cut(s) 714
BmgT120I GGNCC 2 cut(s) 358, 944
BmiI GGNNCC 4 cut(s) 253, 360, 946, 959
BmrFI CCNGG 5 cut(s) 356, 755, 963, 964, 1044
BmrI ACTGGG 1 cut(s) 271
BmsI GCATC 3 cut(s) 167, 963, 1029
BmtI GCTAGC 1 cut(s) 195
BmuI ACTGGG 1 cut(s) 271
Bpu10I CCTNAGC 1 cut(s) 823
Bpu14I TTCGAA 1 cut(s) 368
BpuMI CCSGG 4 cut(s) 755, 963, 964, 1044
BsaI GGTCTC 1 cut(s) 1225
BsaJI CCNNGG 5 cut(s) 589, 961, 962, 1109, 1346
BsaWI WCCGGW 2 cut(s) 163, 312
BsaXI ACNNNNNCTCC 6 cut(s) 118, 148, 872, 902, 1342, 1372
Bsc4I CCNNNNNNNGG 6 cut(s) 261, 595, 613, 643, 953, 954
Bse1I ACTGG 1 cut(s) 266
Bse3DI GCAATG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 5 cut(s) 589, 961, 962, 1109, 1346
BseGI GGATG 2 cut(s) 429, 486
BseLI CCNNNNNNNGG 6 cut(s) 261, 595, 613, 643, 953, 954
BseMI GCAATG 1 cut(s) 281
BseMII CTCAG 3 cut(s) 401, 600, 715
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 1 cut(s) 821
BseX3I CGGCCG 1 cut(s) 68
BseXI GCAGC 5 cut(s) 60, 194, 444, 772, 1345
Bsh1285I CGRYCG 2 cut(s) 71, 80
BshFI GGCC 4 cut(s) 70, 530, 673, 945
BsiEI CGRYCG 2 cut(s) 71, 80
BsiHKAI GWGCWC 1 cut(s) 635
BsiHKCI CYCGRG 1 cut(s) 962
BsiSI CCGG 7 cut(s) 164, 298, 313, 644, 754, 963, 1044
BslFI GGGAC 1 cut(s) 1213
BslI CCNNNNNNNGG 6 cut(s) 261, 595, 613, 643, 953, 954
BsmAI GTCTC 3 cut(s) 231, 1225, 1248
BsmFI GGGAC 1 cut(s) 1213
BsnI GGCC 4 cut(s) 70, 530, 673, 945
Bso31I GGTCTC 1 cut(s) 1225
BsoBI CYCGRG 1 cut(s) 962
Bsp119I TTCGAA 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 635
Bsp1407I TGTACA 1 cut(s) 708
Bsp143I GATC 5 cut(s) 516, 655, 1024, 1029, 1192
Bsp19I CCATGG 1 cut(s) 1346
BspACI CCGC 6 cut(s) 71, 76, 435, 507, 548, 556
BspANI GGCC 4 cut(s) 70, 530, 673, 945
BspCNI CTCAG 3 cut(s) 402, 601, 714
BspHI TCATGA 2 cut(s) 1060, 1189
BspLI GGNNCC 4 cut(s) 253, 360, 946, 959
BspMAI CTGCAG 2 cut(s) 1335, 1395
BspMI ACCTGC 2 cut(s) 85, 1384
BspOI GCTAGC 1 cut(s) 195
BspPI GGATC 3 cut(s) 524, 650, 1019
BspQI GCTCTTC 1 cut(s) 861
BspT104I TTCGAA 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 1225
BsrDI GCAATG 1 cut(s) 281
BsrGI TGTACA 1 cut(s) 708
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 5 cut(s) 589, 961, 962, 1109, 1346
BssMI GATC 5 cut(s) 516, 655, 1024, 1029, 1192
BssT1I CCWWGG 2 cut(s) 1109, 1346
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 4 cut(s) 151, 598, 731, 928
Bst6I CTCTTC 3 cut(s) 297, 861, 978
BstAUI TGTACA 1 cut(s) 708
BstBI TTCGAA 1 cut(s) 368
BstC8I GCNNGC 2 cut(s) 193, 1214
BstDEI CTNAG 4 cut(s) 410, 609, 701, 823
BstDSI CCRYGG 1 cut(s) 1346
BstF5I GGATG 2 cut(s) 429, 486
BstHHI GCGC 1 cut(s) 1318
BstKTI GATC 5 cut(s) 519, 658, 1027, 1032, 1195
BstMAI GTCTC 3 cut(s) 231, 1225, 1248
BstMBI GATC 5 cut(s) 516, 655, 1024, 1029, 1192
BstMCI CGRYCG 2 cut(s) 71, 80
BstMWI GCNNNNNNNGC 3 cut(s) 188, 393, 504
BstNI CCWGG 1 cut(s) 356
BstNSI RCATGY 4 cut(s) 25, 409, 1136, 1171
BstSCI CCNGG 5 cut(s) 354, 753, 961, 962, 1042
BstSFI CTRYAG 2 cut(s) 1331, 1391
BstV1I GCAGC 5 cut(s) 60, 194, 444, 772, 1345
BstXI CCANNNNNNTGG 1 cut(s) 1347
BstZI CGGCCG 1 cut(s) 68
BsuRI GGCC 4 cut(s) 70, 530, 673, 945
BtgI CCRYGG 1 cut(s) 1346
BtgZI GCGATG 1 cut(s) 991
BtrI CACGTC 1 cut(s) 714
BtsCI GGATG 2 cut(s) 429, 486
BtsI GCAGTG 1 cut(s) 1090
BtsIMutI CAGTG 2 cut(s) 537, 1090
BveI ACCTGC 2 cut(s) 85, 1384
Cac8I GCNNGC 2 cut(s) 193, 1214
CciI TCATGA 2 cut(s) 1060, 1189
CfoI GCGC 1 cut(s) 1318
Cfr13I GGNCC 2 cut(s) 358, 944
Cfr9I CCCGGG 1 cut(s) 962
CseI GACGC 1 cut(s) 519
Csp6I GTAC 8 cut(s) 207, 213, 316, 391, 454, 709, 796, 1362
CspCI CAANNNNNGTGG 2 cut(s) 1246, 1281
CviQI GTAC 8 cut(s) 207, 213, 316, 391, 454, 709, 796, 1362
DdeI CTNAG 4 cut(s) 410, 609, 701, 823
DpnI GATC 5 cut(s) 518, 657, 1026, 1031, 1194
DpnII GATC 5 cut(s) 516, 655, 1024, 1029, 1192
EaeI YGGCCR 2 cut(s) 68, 528
EagI CGGCCG 1 cut(s) 68
Eam1104I CTCTTC 3 cut(s) 297, 861, 978
EarI CTCTTC 3 cut(s) 297, 861, 978
Ecl136II GAGCTC 1 cut(s) 633
EclXI CGGCCG 1 cut(s) 68
Eco130I CCWWGG 2 cut(s) 1109, 1346
Eco24I GRGCYC 1 cut(s) 635
Eco31I GGTCTC 1 cut(s) 1225
Eco47I GGWCC 1 cut(s) 358
Eco52I CGGCCG 1 cut(s) 68
Eco53kI GAGCTC 1 cut(s) 633
Eco88I CYCGRG 1 cut(s) 962
EcoICRI GAGCTC 1 cut(s) 633
EcoO109I RGGNCCY 1 cut(s) 944
EcoRII CCWGG 1 cut(s) 354
EcoT14I CCWWGG 2 cut(s) 1109, 1346
EcoT38I GRGCYC 1 cut(s) 635
ErhI CCWWGG 2 cut(s) 1109, 1346
FaqI GGGAC 1 cut(s) 1213
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 8 cut(s) 71, 74, 183, 433, 436, 557, 761, 1334
FokI GGATG 2 cut(s) 436, 473
FriOI GRGCYC 1 cut(s) 635
Fsp4HI GCNGC 8 cut(s) 71, 74, 183, 433, 436, 557, 761, 1334
FspBI CTAG 8 cut(s) 186, 192, 204, 210, 272, 560, 743, 884
FspI TGCGCA 1 cut(s) 1317
GlaI GCGC 1 cut(s) 1317
GluI GCNGC 8 cut(s) 71, 74, 183, 433, 436, 557, 761, 1334
HaeIII GGCC 4 cut(s) 70, 530, 673, 945
HapII CCGG 7 cut(s) 164, 298, 313, 644, 754, 963, 1044
HgaI GACGC 1 cut(s) 519
HhaI GCGC 1 cut(s) 1318
Hin6I GCGC 1 cut(s) 1316
HinP1I GCGC 1 cut(s) 1316
HinfI GANTC 7 cut(s) 244, 500, 689, 892, 1246, 1327, 1387
HpaII CCGG 7 cut(s) 164, 298, 313, 644, 754, 963, 1044
HphI GGTGA 5 cut(s) 439, 562, 574, 916, 1396
Hpy166II GTNNAC 5 cut(s) 277, 711, 1015, 1021, 1279
Hpy188I TCNGA 9 cut(s) 58, 256, 521, 590, 718, 772, 941, 1029, 1251
Hpy188III TCNNGA 4 cut(s) 970, 1061, 1190, 1300
Hpy8I GTNNAC 5 cut(s) 277, 711, 1015, 1021, 1279
HpyAV CCTTC 4 cut(s) 558, 595, 946, 1188
HpyCH4III ACNGT 4 cut(s) 151, 598, 731, 928
HpyCH4IV ACGT 2 cut(s) 713, 1017
HpyCH4V TGCA 7 cut(s) 50, 286, 387, 1130, 1171, 1333, 1393
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 393, 504
HpyF3I CTNAG 4 cut(s) 410, 609, 701, 823
HpySE526I ACGT 2 cut(s) 713, 1017
HspAI GCGC 1 cut(s) 1316
Kzo9I GATC 5 cut(s) 516, 655, 1024, 1029, 1192
LguI GCTCTTC 1 cut(s) 861
LmnI GCTCC 5 cut(s) 257, 638, 757, 880, 1124
Lsp1109I GCAGC 5 cut(s) 60, 194, 444, 772, 1345
LweI GCATC 3 cut(s) 167, 963, 1029
MaeI CTAG 8 cut(s) 186, 192, 204, 210, 272, 560, 743, 884
MaeII ACGT 2 cut(s) 713, 1017
MaeIII GTNAC 4 cut(s) 338, 445, 598, 922
MalI GATC 5 cut(s) 518, 657, 1026, 1031, 1194
MboI GATC 5 cut(s) 516, 655, 1024, 1029, 1192
MboII GAAGA 5 cut(s) 284, 848, 851, 995, 1153
MhlI GDGCHC 1 cut(s) 635
MluCI AATT 7 cut(s) 119, 364, 901, 1066, 1145, 1308, 1321
MlyI GAGTC 3 cut(s) 509, 698, 1255
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 9 cut(s) 300, 389, 584, 647, 669, 774, 799, 935, 999
MseI TTAA 2 cut(s) 38, 812
MslI CAYNNNNRTG 3 cut(s) 20, 1037, 1137
MspA1I CMGCKG 2 cut(s) 73, 435
MspI CCGG 7 cut(s) 164, 298, 313, 644, 754, 963, 1044
MspR9I CCNGG 5 cut(s) 356, 755, 963, 964, 1044
MvaI CCWGG 1 cut(s) 356
MwoI GCNNNNNNNGC 3 cut(s) 188, 393, 504
NciI CCSGG 4 cut(s) 755, 963, 964, 1044
NcoI CCATGG 1 cut(s) 1346
NdeII GATC 5 cut(s) 516, 655, 1024, 1029, 1192
NheI GCTAGC 1 cut(s) 191
NlaIV GGNNCC 4 cut(s) 253, 360, 946, 959
NmeAIII GCCGAG 1 cut(s) 46
NmuCI GTSAC 2 cut(s) 445, 922
NsbI TGCGCA 1 cut(s) 1317
NspI RCATGY 4 cut(s) 25, 409, 1136, 1171
NspV TTCGAA 1 cut(s) 368
PagI TCATGA 2 cut(s) 1060, 1189
PciI ACATGT 1 cut(s) 1132
PciSI GCTCTTC 1 cut(s) 861
PfeI GAWTC 4 cut(s) 244, 892, 1327, 1387
PkrI GCNGC 8 cut(s) 72, 75, 184, 434, 437, 558, 762, 1335
PleI GAGTC 3 cut(s) 508, 697, 1254
PpsI GAGTC 3 cut(s) 508, 697, 1254
PscI ACATGT 1 cut(s) 1132
Psp124BI GAGCTC 1 cut(s) 635
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 4 cut(s) 253, 360, 946, 959
PspPI GGNCC 2 cut(s) 358, 944
PstI CTGCAG 2 cut(s) 1335, 1395
RsaI GTAC 8 cut(s) 208, 214, 317, 392, 455, 710, 797, 1363
RsaNI GTAC 8 cut(s) 207, 213, 316, 391, 454, 709, 796, 1362
RseI CAYNNNNRTG 3 cut(s) 20, 1037, 1137
SacI GAGCTC 1 cut(s) 635
SapI GCTCTTC 1 cut(s) 861
SaqAI TTAA 2 cut(s) 38, 812
SatI GCNGC 8 cut(s) 71, 74, 183, 433, 436, 557, 761, 1334
Sau3AI GATC 5 cut(s) 516, 655, 1024, 1029, 1192
Sau96I GGNCC 2 cut(s) 358, 944
ScaI AGTACT 3 cut(s) 208, 214, 1363
SchI GAGTC 3 cut(s) 509, 698, 1255
ScrFI CCNGG 5 cut(s) 356, 755, 963, 964, 1044
SduI GDGCHC 1 cut(s) 635
SfaNI GCATC 3 cut(s) 167, 963, 1029
SfcI CTRYAG 2 cut(s) 1331, 1391
SfuI TTCGAA 1 cut(s) 368
SinI GGWCC 1 cut(s) 358
SmaI CCCGGG 1 cut(s) 964
SmiMI CAYNNNNRTG 3 cut(s) 20, 1037, 1137
SpeI ACTAGT 1 cut(s) 209
Sse9I AATT 7 cut(s) 119, 364, 901, 1066, 1145, 1308, 1321
SsiI CCGC 6 cut(s) 71, 76, 435, 507, 548, 556
SspMI CTAG 8 cut(s) 186, 192, 204, 210, 272, 560, 743, 884
SstI GAGCTC 1 cut(s) 635
StyD4I CCNGG 5 cut(s) 354, 753, 961, 962, 1042
StyI CCWWGG 2 cut(s) 1109, 1346
TaaI ACNGT 4 cut(s) 151, 598, 731, 928
TaiI ACGT 2 cut(s) 716, 1020
TaqI TCGA 5 cut(s) 351, 368, 779, 905, 1301
TasI AATT 7 cut(s) 119, 364, 901, 1066, 1145, 1308, 1321
TatI WGTACW 7 cut(s) 206, 212, 390, 453, 708, 795, 1361
TauI GCSGC 3 cut(s) 73, 438, 559
TfiI GAWTC 4 cut(s) 244, 892, 1327, 1387
Tru1I TTAA 2 cut(s) 38, 812
Tru9I TTAA 2 cut(s) 38, 812
TscAI CASTG 2 cut(s) 544, 1090
TseFI GTSAC 2 cut(s) 445, 922
TseI GCWGC 5 cut(s) 73, 182, 432, 760, 1333
Tsp45I GTSAC 2 cut(s) 445, 922
TspDTI ATGAA 6 cut(s) 26, 456, 681, 735, 926, 1178
TspGWI ACGGA 1 cut(s) 893
TspMI CCCGGG 1 cut(s) 962
TspRI CASTG 2 cut(s) 544, 1090
VpaK11BI GGWCC 1 cut(s) 358
XapI RAATTY 2 cut(s) 1066, 1321
XceI RCATGY 4 cut(s) 25, 409, 1136, 1171
XmaI CCCGGG 1 cut(s) 962
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 8 cut(s) 186, 192, 204, 210, 272, 560, 743, 884
ZrmI AGTACT 3 cut(s) 208, 214, 1363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.