pycom13g14980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0002042
Physical Location & Seq
Reverse (-)
10883846 .. 10887119
3274 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g14980.7

Sequence Viewer

Length: 858 bp
ATGGGGCAAAGGAAGCCTCCAAGAAAGGAGAGGAAAAAGTCATCAACTGCTCATGCTAACCAGGCCACTTTAGTTGGAGAGCTAGAACGATCTGAATCTGTAGATGCAGACGCTAACTCTGTGTCACAATTCCAGTTGGATGGGCAAATTGGAATGAATCCTGGCTCTTTTATGGAGGCAAAAATGAATTCAGCTTATGCGGACGCGACGTACATGATTGATGGTTCTGGAGTTAGTCCAGGAAATACTAATGGCTCAACATCTGTGACCCTTCCACCGACAAAACGATTTAAAATGATACCAGGTCAGCAGCTGCCTTTATCAGATGATATAGGAACAGCATTTGCTGTATCAAAACTTGCAAGTACTGAGGATGCATATCCTTATAGGGATTCTCCAAAAGGAGCCATTTCTGCTCTTAAATATAAGAAGTCCGGGCAAGCCCTTGATTGCTGCCTGCCAATTAAAGATTGTCCTCTTCCCCTGGCTACTAAAGTATATTACTCTCAAAGAGGCAATCGGCTCCGATCAGATCTTAGTCATCTATACCGTGAGGCAATGGCATCAACTGAGGAGCTTTGTAGTGACATGAGAGACTCACAGCCTTTGCCTTCTTTGCGGAAACCTGACCAAATTCTCACACAAAATTCAGAAGTTTGTTTGGAGAACTCAATAGGTTACCTGCCTGATGGTGACTTCTCAAATCAGTTTCCTGTGGATAATGTTCCAAGGCCTCAGGTGGCTGGCGTTGGTTTAGCAAGAAGCAAAATTCTTTCAAAACCTTATTCTTTTGCGGGTAACTCAGGACAATCATTGGGGACCATGCAACAGAAAACTGGCAGCGTTCCCGTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sgf11

Protein Analysis

286

Amino Acids

30.75

Weight (kDa)

8.49

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 690
AccII CGCG 1 cut(s) 206
AciI CCGC 3 cut(s) 200, 619, 794
AcsI RAATTY 4 cut(s) 187, 633, 646, 768
AfaI GTAC 2 cut(s) 212, 367
AgsI TTSAA 1 cut(s) 777
AjnI CCWGG 5 cut(s) 60, 160, 238, 301, 483
AluBI AGCT 4 cut(s) 82, 194, 313, 577
AluI AGCT 4 cut(s) 82, 194, 313, 577
Alw26I GTCTC 1 cut(s) 588
AlwNI CAGNNNCTG 1 cut(s) 313
AoxI GGCC 2 cut(s) 63, 731
ApeKI GCWGC 4 cut(s) 310, 313, 453, 840
ApoI RAATTY 4 cut(s) 187, 633, 646, 768
AspS9I GGNCC 1 cut(s) 819
AsuC2I CCSGG 1 cut(s) 436
AsuHPI GGTGA 1 cut(s) 704
AvaII GGWCC 1 cut(s) 819
AxyI CCTNAGG 1 cut(s) 735
BbvI GCAGC 4 cut(s) 300, 322, 440, 852
BccI CCATC 3 cut(s) 134, 215, 683
BciT130I CCWGG 5 cut(s) 62, 162, 240, 303, 485
BcnI CCSGG 1 cut(s) 436
BcoDI GTCTC 1 cut(s) 588
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 690
BglII AGATCT 1 cut(s) 532
BisI GCNGC 4 cut(s) 311, 314, 454, 841
BlsI GCNGC 4 cut(s) 312, 315, 455, 842
BmcAI AGTACT 1 cut(s) 367
Bme1390I CCNGG 6 cut(s) 62, 162, 240, 303, 436, 485
Bme18I GGWCC 1 cut(s) 819
BmgT120I GGNCC 1 cut(s) 819
BmiI GGNNCC 3 cut(s) 406, 524, 820
BmrFI CCNGG 6 cut(s) 62, 162, 240, 303, 436, 485
BmsI GCATC 3 cut(s) 94, 364, 572
BpmI CTGGAG 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 436
BsaBI GATNNNNATC 2 cut(s) 94, 378
BsaJI CCNNGG 2 cut(s) 483, 728
Bse1I ACTGG 2 cut(s) 133, 841
Bse21I CCTNAGG 1 cut(s) 735
Bse3DI GCAATG 1 cut(s) 564
Bse8I GATNNNNATC 2 cut(s) 94, 378
BseBI CCWGG 5 cut(s) 62, 162, 240, 303, 485
BseDI CCNNGG 2 cut(s) 483, 728
BseGI GGATG 2 cut(s) 145, 379
BseJI GATNNNNATC 2 cut(s) 94, 378
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 4 cut(s) 360, 561, 749, 816
BseNI ACTGG 2 cut(s) 133, 841
BseRI GAGGAG 1 cut(s) 587
BseXI GCAGC 4 cut(s) 300, 322, 440, 852
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 2 cut(s) 65, 733
BsiSI CCGG 1 cut(s) 435
BslFI GGGAC 1 cut(s) 832
BsmAI GTCTC 1 cut(s) 588
BsmFI GGGAC 1 cut(s) 832
BsnI GGCC 2 cut(s) 65, 733
Bsp143I GATC 3 cut(s) 89, 527, 532
BspACI CCGC 3 cut(s) 200, 619, 794
BspANI GGCC 2 cut(s) 65, 733
BspCNI CTCAG 4 cut(s) 361, 562, 748, 815
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 3 cut(s) 406, 524, 820
BspMI ACCTGC 1 cut(s) 690
BsrDI GCAATG 1 cut(s) 564
BsrI ACTGG 2 cut(s) 133, 841
BssECI CCNNGG 2 cut(s) 483, 728
BssMI GATC 3 cut(s) 89, 527, 532
BssT1I CCWWGG 1 cut(s) 728
Bst2UI CCWGG 5 cut(s) 62, 162, 240, 303, 485
Bst4CI ACNGT 1 cut(s) 551
Bst6I CTCTTC 1 cut(s) 483
BstC8I GCNNGC 3 cut(s) 441, 458, 745
BstDEI CTNAG 5 cut(s) 369, 536, 570, 735, 802
BstEII GGTNACC 1 cut(s) 677
BstF5I GGATG 2 cut(s) 145, 379
BstFNI CGCG 1 cut(s) 206
BstKTI GATC 3 cut(s) 92, 530, 535
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 3 cut(s) 89, 527, 532
BstMWI GCNNNNNNNGC 4 cut(s) 13, 62, 413, 616
BstNI CCWGG 5 cut(s) 62, 162, 240, 303, 485
BstPI GGTNACC 1 cut(s) 677
BstSCI CCNGG 6 cut(s) 60, 160, 238, 301, 434, 483
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 4 cut(s) 300, 322, 440, 852
BstX2I RGATCY 1 cut(s) 532
BstXI CCANNNNNNTGG 1 cut(s) 140
BstYI RGATCY 1 cut(s) 532
Bsu36I CCTNAGG 1 cut(s) 735
BsuRI GGCC 2 cut(s) 65, 733
BtsCI GGATG 2 cut(s) 145, 379
BveI ACCTGC 1 cut(s) 690
Cac8I GCNNGC 3 cut(s) 441, 458, 745
CaiI CAGNNNCTG 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 819
CseI GACGC 2 cut(s) 119, 212
CsiI ACCWGGT 1 cut(s) 301
Csp6I GTAC 2 cut(s) 211, 366
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 4 cut(s) 53, 214, 589, 823
CviQI GTAC 2 cut(s) 211, 366
DdeI CTNAG 5 cut(s) 369, 536, 570, 735, 802
DpnI GATC 3 cut(s) 91, 529, 534
DpnII GATC 3 cut(s) 89, 527, 532
DraI TTTAAA 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Eco130I CCWWGG 1 cut(s) 728
Eco147I AGGCCT 1 cut(s) 733
Eco47I GGWCC 1 cut(s) 819
Eco81I CCTNAGG 1 cut(s) 735
Eco91I GGTNACC 1 cut(s) 677
EcoO65I GGTNACC 1 cut(s) 677
EcoRI GAATTC 1 cut(s) 187
EcoRII CCWGG 5 cut(s) 60, 160, 238, 301, 483
EcoT14I CCWWGG 1 cut(s) 728
EcoT22I ATGCAT 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 728
FaeI CATG 4 cut(s) 56, 217, 592, 826
FaqI GGGAC 1 cut(s) 832
FatI CATG 4 cut(s) 52, 213, 588, 822
FauI CCCGC 1 cut(s) 787
Fnu4HI GCNGC 4 cut(s) 311, 314, 454, 841
FokI GGATG 2 cut(s) 152, 386
Fsp4HI GCNGC 4 cut(s) 311, 314, 454, 841
FspBI CTAG 1 cut(s) 83
GluI GCNGC 4 cut(s) 311, 314, 454, 841
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 2 cut(s) 65, 733
HapII CCGG 1 cut(s) 435
HgaI GACGC 2 cut(s) 119, 212
Hin1II CATG 4 cut(s) 56, 217, 592, 826
HinfI GANTC 4 cut(s) 95, 157, 392, 596
HpaII CCGG 1 cut(s) 435
HphI GGTGA 1 cut(s) 704
Hpy188I TCNGA 5 cut(s) 94, 325, 527, 532, 652
Hpy188III TCNNGA 2 cut(s) 228, 804
Hpy99I CGWCG 1 cut(s) 211
HpyAV CCTTC 2 cut(s) 281, 621
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 4 cut(s) 107, 362, 377, 826
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 62, 413, 616
HpyF3I CTNAG 5 cut(s) 369, 536, 570, 735, 802
HpySE526I ACGT 1 cut(s) 209
Hsp92II CATG 4 cut(s) 56, 217, 592, 826
Kzo9I GATC 3 cut(s) 89, 527, 532
LmnI GCTCC 3 cut(s) 404, 528, 574
Lsp1109I GCAGC 4 cut(s) 300, 322, 440, 852
LweI GCATC 3 cut(s) 94, 364, 572
MabI ACCWGGT 1 cut(s) 301
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 6 cut(s) 123, 265, 584, 677, 692, 797
MalI GATC 3 cut(s) 91, 529, 534
MboI GATC 3 cut(s) 89, 527, 532
MboII GAAGA 1 cut(s) 470
MflI RGATCY 1 cut(s) 532
MluCI AATT 7 cut(s) 128, 147, 187, 462, 633, 646, 768
MlyI GAGTC 1 cut(s) 590
MmeI TCCRAC 2 cut(s) 55, 117
MnlI CCTC 9 cut(s) 24, 27, 169, 364, 486, 506, 547, 565, 744
Mph1103I ATGCAT 1 cut(s) 379
MseI TTAA 3 cut(s) 291, 420, 465
MspA1I CMGCKG 1 cut(s) 313
MspI CCGG 1 cut(s) 435
MspR9I CCNGG 6 cut(s) 62, 162, 240, 303, 436, 485
MvaI CCWGG 5 cut(s) 62, 162, 240, 303, 485
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 4 cut(s) 13, 62, 413, 616
NciI CCSGG 1 cut(s) 436
NdeII GATC 3 cut(s) 89, 527, 532
NlaIII CATG 4 cut(s) 56, 217, 592, 826
NlaIV GGNNCC 3 cut(s) 406, 524, 820
NmuCI GTSAC 4 cut(s) 123, 265, 584, 692
NsiI ATGCAT 1 cut(s) 379
PceI AGGCCT 1 cut(s) 733
PfeI GAWTC 3 cut(s) 95, 157, 392
PfoI TCCNGGA 1 cut(s) 238
PkrI GCNGC 4 cut(s) 312, 315, 455, 842
PleI GAGTC 1 cut(s) 590
PpsI GAGTC 1 cut(s) 590
Psp6I CCWGG 5 cut(s) 60, 160, 238, 301, 483
PspEI GGTNACC 1 cut(s) 677
PspGI CCWGG 5 cut(s) 60, 160, 238, 301, 483
PspN4I GGNNCC 3 cut(s) 406, 524, 820
PspPI GGNCC 1 cut(s) 819
PstNI CAGNNNCTG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 532
PvuII CAGCTG 1 cut(s) 313
RsaI GTAC 2 cut(s) 212, 367
RsaNI GTAC 2 cut(s) 211, 366
SaqAI TTAA 3 cut(s) 291, 420, 465
SatI GCNGC 4 cut(s) 311, 314, 454, 841
Sau3AI GATC 3 cut(s) 89, 527, 532
Sau96I GGNCC 1 cut(s) 819
ScaI AGTACT 1 cut(s) 367
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 6 cut(s) 62, 162, 240, 303, 436, 485
SexAI ACCWGGT 1 cut(s) 301
SfaNI GCATC 3 cut(s) 94, 364, 572
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 1 cut(s) 819
Sse9I AATT 7 cut(s) 128, 147, 187, 462, 633, 646, 768
SseBI AGGCCT 1 cut(s) 733
SsiI CCGC 3 cut(s) 200, 619, 794
SspMI CTAG 1 cut(s) 83
StuI AGGCCT 1 cut(s) 733
StyD4I CCNGG 6 cut(s) 60, 160, 238, 301, 434, 483
StyI CCWWGG 1 cut(s) 728
TaaI ACNGT 1 cut(s) 551
TaiI ACGT 1 cut(s) 212
TasI AATT 7 cut(s) 128, 147, 187, 462, 633, 646, 768
TatI WGTACW 1 cut(s) 365
TfiI GAWTC 3 cut(s) 95, 157, 392
Tru1I TTAA 3 cut(s) 291, 420, 465
Tru9I TTAA 3 cut(s) 291, 420, 465
TseFI GTSAC 4 cut(s) 123, 265, 584, 692
TseI GCWGC 4 cut(s) 310, 313, 453, 840
Tsp45I GTSAC 4 cut(s) 123, 265, 584, 692
TspDTI ATGAA 2 cut(s) 170, 200
VpaK11BI GGWCC 1 cut(s) 819
XapI RAATTY 4 cut(s) 187, 633, 646, 768
XspI CTAG 1 cut(s) 83
ZrmI AGTACT 1 cut(s) 367
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.