MD16G1175700.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
14898631 .. 14901518
2888 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1175700.v1.1.491

Sequence Viewer

Length: 327 bp
ATGCGAGTCTCGATGGTATGTTCACTTGGAAGTGGGAGGATGGCTGTCATGGCAAGGCTTCTGGCAGGCGGGACTGTCTCACAAAGCATAACAGAAGATGTTGGCCATCAGAAGTTTGCCGCTCAAATAATTTGCAGAGAATTAAGTGAGGCAAATGAAGCTAATTTGCTTGACGAAGAAGATATGCATGTGTTTGGTTTGAAGCCGATGGATGATCCTTTACATTTGGTGTGTTGCAATGCTTGTAAAAAACCAGTCAAGGCCAGTCAGTATGTGGCTCATGCAGGTTTGGAGGTCTTTTTTTTCCTGCTATTTCCTTCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

11.8

Weight (kDa)

6.04

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 275
AccBSI CCGCTC 1 cut(s) 122
AciI CCGC 2 cut(s) 69, 120
AclWI GGATC 1 cut(s) 209
AcoI YGGCCR 1 cut(s) 103
AgsI TTSAA 2 cut(s) 202, 321
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw26I GTCTC 2 cut(s) 13, 82
AlwI GGATC 1 cut(s) 209
AoxI GGCC 2 cut(s) 103, 261
BalI TGGCCA 1 cut(s) 105
BccI CCATC 4 cut(s) 7, 34, 114, 202
BcoDI GTCTC 2 cut(s) 13, 82
BfuAI ACCTGC 1 cut(s) 275
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bse1I ACTGG 2 cut(s) 254, 264
Bse3DI GCAATG 1 cut(s) 244
BseGI GGATG 2 cut(s) 45, 217
BseMI GCAATG 1 cut(s) 244
BseNI ACTGG 2 cut(s) 254, 264
BshFI GGCC 2 cut(s) 105, 263
BslFI GGGAC 1 cut(s) 85
BsmAI GTCTC 2 cut(s) 13, 82
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 2 cut(s) 105, 263
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 2 cut(s) 69, 120
BspANI GGCC 2 cut(s) 105, 263
BspMI ACCTGC 1 cut(s) 275
BspPI GGATC 1 cut(s) 209
BsrBI CCGCTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 244
BsrI ACTGG 2 cut(s) 254, 264
BssMI GATC 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 67
BstF5I GGATG 2 cut(s) 45, 217
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 2 cut(s) 13, 82
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 50, 158
BstNSI RCATGY 1 cut(s) 191
BsuRI GGCC 2 cut(s) 105, 263
BtsCI GGATG 2 cut(s) 45, 217
BveI ACCTGC 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 67
CviAII CATG 3 cut(s) 49, 188, 281
CviJI RGCY 7 cut(s) 44, 58, 105, 161, 205, 263, 278
CviKI_1 RGCY 7 cut(s) 44, 58, 105, 161, 205, 263, 278
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 189
FaeI CATG 3 cut(s) 52, 191, 284
FaiI YATR 7 cut(s) 19, 50, 89, 185, 189, 273, 282
FaqI GGGAC 1 cut(s) 85
FatI CATG 3 cut(s) 48, 187, 280
FauI CCCGC 1 cut(s) 62
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 52, 224
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 2 cut(s) 105, 263
Hin1II CATG 3 cut(s) 52, 191, 284
HinfI GANTC 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 1 cut(s) 327
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 4 cut(s) 135, 187, 237, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 158
Hsp92II CATG 3 cut(s) 52, 191, 284
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 6 cut(s) 47, 51, 267, 270, 277, 320
MalI GATC 1 cut(s) 216
MbiI CCGCTC 1 cut(s) 122
MboI GATC 1 cut(s) 214
MboII GAAGA 3 cut(s) 107, 188, 191
MlsI TGGCCA 1 cut(s) 105
MluCI AATT 3 cut(s) 129, 140, 163
MluNI TGGCCA 1 cut(s) 105
MlyI GAGTC 1 cut(s) 15
MnlI CCTC 3 cut(s) 30, 142, 286
Mox20I TGGCCA 1 cut(s) 105
Mph1103I ATGCAT 1 cut(s) 189
MscI TGGCCA 1 cut(s) 105
MseI TTAA 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 50, 158
NdeII GATC 1 cut(s) 214
NlaIII CATG 3 cut(s) 52, 191, 284
NsiI ATGCAT 1 cut(s) 189
NspI RCATGY 1 cut(s) 191
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 214
SchI GAGTC 1 cut(s) 15
SetI ASST 3 cut(s) 163, 289, 297
Sse9I AATT 3 cut(s) 129, 140, 163
SsiI CCGC 2 cut(s) 69, 120
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 1 cut(s) 11
TasI AATT 3 cut(s) 129, 140, 163
TauI GCSGC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 171
XceI RCATGY 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
Zsp2I ATGCAT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.