Rh4DG227000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002042
Physical Location & Seq
Forward (+)
43139177 .. 43144690
5514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG227000.1

Sequence Viewer

Length: 1083 bp
ATGGTTTGCTCGGTTGGAAGTGGGAGGATGGCGGTCATGGCAAGGGTTCTTGCAGGTGGGAGTGTGTCACATAGCCTTGCAGATGAAGCTCCCCATCAGAAATTTGCGGCTCATTTGATTTGTAGACAGTTAATTGAGGCAAATGATGCAAATTTGCTTGACGAAGAAGATATGCATGTGTTTGATTTGGAGCCGATGGCTGATACTTTGCTCTTGGTTAGTTGCAATGCTTGTAAAAAACCAGTGAAGGCTAGCCAATATGCAGCCCATTCAGTACTTTGCAGGTCATTAAATTCTACGCAGGAAACTAATTTGGAGCTTGATGGAAGTATTGGGCAAAGGAAGCCTCCAAGGAAGGAGAAGAAAAAGTTATTAACTGCATATGCTCACCAGTCAACGTCAGTTGGAGAGCTACAAAGGTCTGAATCTGCAGATGATATTGCTGTGTCTCAGCCTCAGTTGGATGGGAAAATAGGAATGAATTCTTCTTGTGGGAACTCAGCATCTGTAGAAACAACCTATATGATGGATGGTTCAGGAGTTACCCCTGAAAATACCAGTTACTCAACAAGTCTGCTGCATCCTCCAACAAAACGATTTAAAATGATAGCAAGTGAGCAGCCACCACTATCAGATGATCTGGGAACAACATCTATTGTATCAGAACTCAAAAGTACTCAGGAAGCATGTCCATACTGTCCTGTTCCCCTTGCTACTAAAGTATATTACTCGCAAAGAAGTAATCGGCTCCGTACAGCACTTTGTCATCTCTACTCTGAGGCAGTGGCATCAAATAAGGAGCTTTGCACTGCCATGAGGGATGAACAGTCTTTGCCTTCTATACGAACACCTGATCAAATTCTCGCACAAAATTCAGAAGCTTGCTTGGAGAAATCAATAGGCTCCCTTCCTGCTGGTGACCTATCAAACCAGTTTCCCATTGATAATGTTCCGAGGCCTCAGGCTGCAGGTGTTGGTTTGACAAGAACCAAACTTCTTTCAAAACCTTATTCTTTTGCAGGTAGCTCAGGACAATCGCTGGGAACCATGCAACAGCGAAATGGCAGAGTTCCTGTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sgf11

Protein Analysis

360

Amino Acids

38.73

Weight (kDa)

6.46

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 44, 959
Acc36I ACCTGC 4 cut(s) 44, 273, 959, 1010
AccI GTMKAC 1 cut(s) 124
AciI CCGC 2 cut(s) 32, 107
AcsI RAATTY 6 cut(s) 101, 151, 292, 481, 858, 871
AfaI GTAC 3 cut(s) 276, 676, 754
AgsI TTSAA 1 cut(s) 1002
AluBI AGCT 6 cut(s) 89, 319, 412, 802, 881, 1026
AluI AGCT 6 cut(s) 89, 319, 412, 802, 881, 1026
Alw26I GTCTC 1 cut(s) 453
AlwNI CAGNNNCTG 1 cut(s) 506
AoxI GGCC 1 cut(s) 956
ApeKI GCWGC 4 cut(s) 263, 577, 619, 965
ApoI RAATTY 6 cut(s) 101, 151, 292, 481, 858, 871
Asp700I GAANNNNTTC 1 cut(s) 481
AsuHPI GGTGA 2 cut(s) 380, 929
AsuNHI GCTAGC 1 cut(s) 251
AxyI CCTNAGG 1 cut(s) 960
BbvI GCAGC 4 cut(s) 275, 564, 631, 952
BccI CCATC 7 cut(s) 22, 102, 190, 317, 458, 520, 524
BclI TGATCA 1 cut(s) 853
BcoDI GTCTC 1 cut(s) 453
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 3 cut(s) 429, 507, 966
BfuAI ACCTGC 4 cut(s) 44, 273, 959, 1010
BisI GCNGC 5 cut(s) 108, 264, 578, 620, 966
BlsI GCNGC 5 cut(s) 109, 265, 579, 621, 967
BmcAI AGTACT 2 cut(s) 276, 676
BmiI GGNNCC 4 cut(s) 192, 749, 904, 1045
BmsI GCATC 4 cut(s) 136, 512, 589, 797
BmtI GCTAGC 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 1027
BsaJI CCNNGG 2 cut(s) 350, 953
Bse1I ACTGG 4 cut(s) 242, 391, 558, 931
Bse21I CCTNAGG 1 cut(s) 960
Bse3DI GCAATG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 350, 953
BseGI GGATG 5 cut(s) 33, 469, 535, 580, 826
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 7 cut(s) 464, 470, 513, 692, 768, 974, 1041
BseNI ACTGG 4 cut(s) 242, 391, 558, 931
BseXI GCAGC 4 cut(s) 275, 564, 631, 952
BseYI CCCAGC 1 cut(s) 1039
BshFI GGCC 1 cut(s) 958
BsmAI GTCTC 1 cut(s) 453
BsnI GGCC 1 cut(s) 958
Bsp143I GATC 2 cut(s) 637, 853
BspACI CCGC 2 cut(s) 32, 107
BspANI GGCC 1 cut(s) 958
BspCNI CTCAG 7 cut(s) 463, 469, 512, 691, 769, 973, 1040
BspLI GGNNCC 4 cut(s) 192, 749, 904, 1045
BspMAI CTGCAG 2 cut(s) 433, 970
BspMI ACCTGC 4 cut(s) 44, 273, 959, 1010
BspOI GCTAGC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 232
BsrI ACTGG 4 cut(s) 242, 391, 558, 931
BssECI CCNNGG 2 cut(s) 350, 953
BssMI GATC 2 cut(s) 637, 853
BssT1I CCWWGG 1 cut(s) 350
Bst4CI ACNGT 3 cut(s) 129, 698, 828
BstAPI GCANNNNNTGC 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 253, 883
BstDEI CTNAG 7 cut(s) 450, 456, 499, 678, 777, 960, 1027
BstEII GGTNACC 1 cut(s) 917
BstF5I GGATG 5 cut(s) 33, 469, 535, 580, 826
BstKTI GATC 2 cut(s) 640, 856
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 2 cut(s) 637, 853
BstMWI GCNNNNNNNGC 4 cut(s) 38, 86, 146, 343
BstNSI RCATGY 2 cut(s) 179, 690
BstPI GGTNACC 1 cut(s) 917
BstSFI CTRYAG 3 cut(s) 429, 507, 966
BstV1I GCAGC 4 cut(s) 275, 564, 631, 952
Bsu36I CCTNAGG 1 cut(s) 960
BsuRI GGCC 1 cut(s) 958
BtsCI GGATG 5 cut(s) 33, 469, 535, 580, 826
BtsI GCAGTG 2 cut(s) 789, 807
BtsIMutI CAGTG 3 cut(s) 249, 789, 807
BveI ACCTGC 4 cut(s) 44, 273, 959, 1010
Cac8I GCNNGC 2 cut(s) 253, 883
CaiI CAGNNNCTG 1 cut(s) 506
Csp6I GTAC 3 cut(s) 275, 675, 753
CviAII CATG 5 cut(s) 37, 176, 687, 814, 1048
CviQI GTAC 3 cut(s) 275, 675, 753
DdeI CTNAG 7 cut(s) 450, 456, 499, 678, 777, 960, 1027
DpnI GATC 2 cut(s) 639, 855
DpnII GATC 2 cut(s) 637, 853
DraI TTTAAA 1 cut(s) 601
Eco130I CCWWGG 1 cut(s) 350
Eco147I AGGCCT 1 cut(s) 958
Eco81I CCTNAGG 1 cut(s) 960
Eco91I GGTNACC 1 cut(s) 917
EcoO65I GGTNACC 1 cut(s) 917
EcoRI GAATTC 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 350
EcoT22I ATGCAT 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 5 cut(s) 40, 179, 690, 817, 1051
FatI CATG 5 cut(s) 36, 175, 686, 813, 1047
FauNDI CATATG 1 cut(s) 382
FbaI TGATCA 1 cut(s) 853
FblI GTMKAC 1 cut(s) 124
Fnu4HI GCNGC 5 cut(s) 108, 264, 578, 620, 966
FokI GGATG 5 cut(s) 40, 476, 542, 567, 833
Fsp4HI GCNGC 5 cut(s) 108, 264, 578, 620, 966
FspBI CTAG 1 cut(s) 252
GluI GCNGC 5 cut(s) 108, 264, 578, 620, 966
GsaI CCCAGC 1 cut(s) 1043
HaeIII GGCC 1 cut(s) 958
Hin1II CATG 5 cut(s) 40, 179, 690, 817, 1051
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HindIII AAGCTT 1 cut(s) 879
HinfI GANTC 1 cut(s) 425
HphI GGTGA 2 cut(s) 380, 929
Hpy166II GTNNAC 2 cut(s) 125, 396
Hpy188I TCNGA 7 cut(s) 99, 424, 634, 664, 778, 877, 954
Hpy188III TCNNGA 3 cut(s) 537, 680, 1029
Hpy8I GTNNAC 2 cut(s) 125, 396
HpyAV CCTTC 4 cut(s) 241, 349, 846, 917
HpyCH4III ACNGT 3 cut(s) 129, 698, 828
HpyCH4IV ACGT 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 86, 146, 343
HpyF3I CTNAG 7 cut(s) 450, 456, 499, 678, 777, 960, 1027
HpySE526I ACGT 1 cut(s) 398
Hsp92II CATG 5 cut(s) 40, 179, 690, 817, 1051
Ksp22I TGATCA 1 cut(s) 853
Kzo9I GATC 2 cut(s) 637, 853
LmnI GCTCC 6 cut(s) 94, 190, 316, 753, 799, 908
Lsp1109I GCAGC 4 cut(s) 275, 564, 631, 952
LweI GCATC 4 cut(s) 136, 512, 589, 797
MaeI CTAG 1 cut(s) 252
MaeII ACGT 1 cut(s) 398
MaeIII GTNAC 4 cut(s) 66, 541, 560, 917
MalI GATC 2 cut(s) 639, 855
MboI GATC 2 cut(s) 637, 853
MboII GAAGA 4 cut(s) 176, 179, 373, 477
MluCI AATT 8 cut(s) 101, 132, 151, 292, 310, 481, 858, 871
MmeI TCCRAC 3 cut(s) 385, 441, 611
MnlI CCTC 9 cut(s) 18, 130, 357, 465, 594, 772, 810, 948, 969
Mph1103I ATGCAT 1 cut(s) 177
MroXI GAANNNNTTC 1 cut(s) 481
MseI TTAA 4 cut(s) 131, 290, 374, 600
MslI CAYNNNNRTG 1 cut(s) 812
MwoI GCNNNNNNNGC 4 cut(s) 38, 86, 146, 343
NdeI CATATG 1 cut(s) 382
NdeII GATC 2 cut(s) 637, 853
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 5 cut(s) 40, 179, 690, 817, 1051
NlaIV GGNNCC 4 cut(s) 192, 749, 904, 1045
NmuCI GTSAC 2 cut(s) 66, 917
NsiI ATGCAT 1 cut(s) 177
NspI RCATGY 2 cut(s) 179, 690
PaqCI CACCTGC 2 cut(s) 44, 959
PceI AGGCCT 1 cut(s) 958
PdmI GAANNNNTTC 1 cut(s) 481
PfeI GAWTC 1 cut(s) 425
PkrI GCNGC 5 cut(s) 109, 265, 579, 621, 967
PspEI GGTNACC 1 cut(s) 917
PspFI CCCAGC 1 cut(s) 1039
PspN4I GGNNCC 4 cut(s) 192, 749, 904, 1045
PstI CTGCAG 2 cut(s) 433, 970
PstNI CAGNNNCTG 1 cut(s) 506
RsaI GTAC 3 cut(s) 276, 676, 754
RsaNI GTAC 3 cut(s) 275, 675, 753
RseI CAYNNNNRTG 1 cut(s) 812
SaqAI TTAA 4 cut(s) 131, 290, 374, 600
SatI GCNGC 5 cut(s) 108, 264, 578, 620, 966
Sau3AI GATC 2 cut(s) 637, 853
ScaI AGTACT 2 cut(s) 276, 676
SfaNI GCATC 4 cut(s) 136, 512, 589, 797
SfcI CTRYAG 3 cut(s) 429, 507, 966
SmiMI CAYNNNNRTG 1 cut(s) 812
Sse9I AATT 8 cut(s) 101, 132, 151, 292, 310, 481, 858, 871
SseBI AGGCCT 1 cut(s) 958
SsiI CCGC 2 cut(s) 32, 107
SspMI CTAG 1 cut(s) 252
StuI AGGCCT 1 cut(s) 958
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 3 cut(s) 129, 698, 828
TaiI ACGT 1 cut(s) 401
TasI AATT 8 cut(s) 101, 132, 151, 292, 310, 481, 858, 871
TatI WGTACW 2 cut(s) 274, 674
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 4 cut(s) 131, 290, 374, 600
Tru9I TTAA 4 cut(s) 131, 290, 374, 600
TscAI CASTG 3 cut(s) 249, 789, 814
TseFI GTSAC 2 cut(s) 66, 917
TseI GCWGC 4 cut(s) 263, 577, 619, 965
Tsp45I GTSAC 2 cut(s) 66, 917
TspDTI ATGAA 3 cut(s) 99, 494, 837
TspGWI ACGGA 1 cut(s) 740
TspRI CASTG 3 cut(s) 249, 789, 814
XapI RAATTY 6 cut(s) 101, 151, 292, 481, 858, 871
XceI RCATGY 2 cut(s) 179, 690
XmiI GTMKAC 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 481
XspI CTAG 1 cut(s) 252
ZrmI AGTACT 2 cut(s) 276, 676
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.