Rh4AG228400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002042
Physical Location & Seq
Forward (+)
53011758 .. 53017671
5914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG228400.1

Sequence Viewer

Length: 1140 bp
ATGCTCCGGCTTCGTCGCGGGTTTGGTAATTCGGGAGCGGACTTAGGATTTGTGCATGGACTAGTTCGGCGGCACTGGAAGTTGGTACCGTTGAGTGGTGGGAGTGTGTCACATAGCCTTGCAGATGAAGCTCCTCATCAGAAATTCGCGGCTCATTTGATTTGTAGACAGTTAATTGAGGCAAATGATGCAAATTTGCTTGACGAAGAAGATATGCATGTGTTTGATTTGGAGCCGATGGCTGATACTTTGCTCTTGGTTTGTTGCAATGCTTGTAAAAAACCAGTGAAGGCTAGCCAATATGCAGCCCATTCAGTACTTTGCAGGTCATTAAATTCTACGCAGGAAACTAATTTGGAGCTTGATGGAAGTATTGGGCAAAGGAAGCCTCCAAGGAAGGAGAAGAAAAAGTTATTAACTGCATATGCTCACCAGTCAACGTCAGTTAGAGAGCTACAAAGGTCCGAATCTGCAGATGATATTGCTGTGTCTCAGCCTCAGTTGGATGGGAAAATAGGAATGAATTCTTCTTGTGGTATGGGCGCAAAGGGGAACTCAGCATCTGTAGAAACAACCTATATGATGGATGGTTCAGGAGTTACCCCTGAAAATACCAGTTACTCAACAAGTCTGCTGCATCGTCCAACAAAACGATTTAAAATGATAGCAAGTGAGCAGCCACCACTATCAGATGATCTGGGAACAACATCTATTGTATCAGAACTCAAAAGTACTCAGGAAGCATGTCCATACTGTCCTGTTCCCCTTGCTACTAAAGTATATTACTCGCAAAGAAGTAATCGGCTCCGTACAGCACTTTGTCATCTGTACTCTGAAGCAGTGGCATCAAATAAGGAGCTTTGCACTGTCATGAGGGACGAACAGTCTTTGCCTTCTATACGAACACCTGATCAAATTCTCGCACAAAATTCAGAAGCTTGCTTGGAGAAATCAATAGGCTCCCTTCCTGCTGGTGACCTATCAAACCAGTTTCCCATTGATAATGTTCCGAGGCCTCAGGCTGCAGGTGTTGGTTTGACAAGAAGCAAACTTCTTTCAAAACCTTATTCTTTTGCAGGTAGCTCAGGACAATCGCTGGGAGCCATGCAACAGCGAAATGGCAGAGTTCCTGTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sgf11

Protein Analysis

379

Amino Acids

41.15

Weight (kDa)

8.43

Isoelectric Point (pI)

51.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1016
Acc36I ACCTGC 3 cut(s) 315, 1016, 1067
Acc65I GGTACC 1 cut(s) 85
AccB1I GGYRCC 1 cut(s) 85
AccBSI CCGCTC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 166
AccII CGCG 2 cut(s) 18, 149
AciI CCGC 4 cut(s) 18, 38, 70, 149
AcsI RAATTY 6 cut(s) 143, 193, 334, 523, 915, 928
AcuI CTGAAG 1 cut(s) 855
AfaI GTAC 5 cut(s) 87, 318, 733, 811, 830
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 1 cut(s) 1059
AhdI GACNNNNNGTC 1 cut(s) 883
AhlI ACTAGT 1 cut(s) 61
AluBI AGCT 6 cut(s) 131, 361, 454, 859, 938, 1083
AluI AGCT 6 cut(s) 131, 361, 454, 859, 938, 1083
Alw26I GTCTC 1 cut(s) 495
AlwNI CAGNNNCTG 1 cut(s) 563
AoxI GGCC 1 cut(s) 1013
ApeKI GCWGC 4 cut(s) 305, 634, 676, 1022
ApoI RAATTY 6 cut(s) 143, 193, 334, 523, 915, 928
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
Asp700I GAANNNNTTC 1 cut(s) 523
Asp718I GGTACC 1 cut(s) 85
AspLEI GCGC 1 cut(s) 545
AspS9I GGNCC 1 cut(s) 462
AsuHPI GGTGA 2 cut(s) 422, 986
AsuNHI GCTAGC 1 cut(s) 293
AvaII GGWCC 1 cut(s) 462
AxyI CCTNAGG 1 cut(s) 1017
BanI GGYRCC 1 cut(s) 85
BbvI GCAGC 4 cut(s) 317, 621, 688, 1009
BccI CCATC 5 cut(s) 232, 359, 500, 577, 581
BclI TGATCA 1 cut(s) 910
BcoDI GTCTC 1 cut(s) 495
BcuI ACTAGT 1 cut(s) 61
BfaI CTAG 2 cut(s) 62, 294
BfmI CTRYAG 3 cut(s) 471, 564, 1023
BfuAI ACCTGC 3 cut(s) 315, 1016, 1067
BisI GCNGC 6 cut(s) 71, 150, 306, 635, 677, 1023
BlsI GCNGC 6 cut(s) 72, 151, 307, 636, 678, 1024
BmcAI AGTACT 2 cut(s) 318, 733
Bme18I GGWCC 1 cut(s) 462
BmeRI GACNNNNNGTC 1 cut(s) 883
BmgT120I GGNCC 1 cut(s) 462
BmiI GGNNCC 5 cut(s) 87, 234, 806, 961, 1102
BmsI GCATC 4 cut(s) 178, 569, 646, 854
BmtI GCTAGC 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 1084
BsaJI CCNNGG 2 cut(s) 392, 1010
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 5 cut(s) 80, 284, 433, 615, 988
Bse21I CCTNAGG 1 cut(s) 1017
Bse3DI GCAATG 1 cut(s) 274
BseDI CCNNGG 2 cut(s) 392, 1010
BseGI GGATG 2 cut(s) 511, 592
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMI GCAATG 1 cut(s) 274
BseMII CTCAG 6 cut(s) 506, 512, 570, 749, 1031, 1098
BseNI ACTGG 5 cut(s) 80, 284, 433, 615, 988
BseRI GAGGAG 1 cut(s) 123
BseXI GCAGC 4 cut(s) 317, 621, 688, 1009
BseYI CCCAGC 1 cut(s) 1096
Bsh1236I CGCG 2 cut(s) 18, 149
BshFI GGCC 1 cut(s) 1015
BshNI GGYRCC 1 cut(s) 85
BsiSI CCGG 1 cut(s) 7
BslFI GGGAC 1 cut(s) 890
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 495
BsmFI GGGAC 1 cut(s) 890
BsnI GGCC 1 cut(s) 1015
Bsp143I GATC 2 cut(s) 694, 910
BspACI CCGC 4 cut(s) 18, 38, 70, 149
BspANI GGCC 1 cut(s) 1015
BspCNI CTCAG 6 cut(s) 505, 511, 569, 748, 1030, 1097
BspFNI CGCG 2 cut(s) 18, 149
BspHI TCATGA 1 cut(s) 870
BspLI GGNNCC 5 cut(s) 87, 234, 806, 961, 1102
BspMAI CTGCAG 2 cut(s) 475, 1027
BspMI ACCTGC 3 cut(s) 315, 1016, 1067
BspOI GCTAGC 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 85
BsrBI CCGCTC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 274
BsrI ACTGG 5 cut(s) 80, 284, 433, 615, 988
BssECI CCNNGG 2 cut(s) 392, 1010
BssMI GATC 2 cut(s) 694, 910
BssT1I CCWWGG 1 cut(s) 392
Bst4CI ACNGT 5 cut(s) 90, 171, 755, 868, 885
BstAPI GCANNNNNTGC 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 295, 940
BstDEI CTNAG 7 cut(s) 43, 492, 498, 556, 735, 1017, 1084
BstEII GGTNACC 1 cut(s) 974
BstF5I GGATG 2 cut(s) 511, 592
BstFNI CGCG 2 cut(s) 18, 149
BstHHI GCGC 1 cut(s) 545
BstKTI GATC 2 cut(s) 697, 913
BstMAI GTCTC 1 cut(s) 495
BstMBI GATC 2 cut(s) 694, 910
BstMWI GCNNNNNNNGC 3 cut(s) 128, 188, 385
BstNSI RCATGY 2 cut(s) 221, 747
BstPI GGTNACC 1 cut(s) 974
BstSFI CTRYAG 3 cut(s) 471, 564, 1023
BstUI CGCG 2 cut(s) 18, 149
BstV1I GCAGC 4 cut(s) 317, 621, 688, 1009
Bsu36I CCTNAGG 1 cut(s) 1017
BsuRI GGCC 1 cut(s) 1015
BtsCI GGATG 2 cut(s) 511, 592
BtsI GCAGTG 1 cut(s) 846
BtsIMutI CAGTG 4 cut(s) 73, 291, 846, 864
BveI ACCTGC 3 cut(s) 315, 1016, 1067
Cac8I GCNNGC 2 cut(s) 295, 940
CaiI CAGNNNCTG 1 cut(s) 563
CciI TCATGA 1 cut(s) 870
CfoI GCGC 1 cut(s) 545
Cfr13I GGNCC 1 cut(s) 462
Csp6I GTAC 5 cut(s) 86, 317, 732, 810, 829
CviAII CATG 5 cut(s) 56, 218, 744, 871, 1105
CviQI GTAC 5 cut(s) 86, 317, 732, 810, 829
DdeI CTNAG 7 cut(s) 43, 492, 498, 556, 735, 1017, 1084
DpnI GATC 2 cut(s) 696, 912
DpnII GATC 2 cut(s) 694, 910
DraI TTTAAA 1 cut(s) 658
DriI GACNNNNNGTC 1 cut(s) 883
Eam1105I GACNNNNNGTC 1 cut(s) 883
Eco130I CCWWGG 1 cut(s) 392
Eco147I AGGCCT 1 cut(s) 1015
Eco47I GGWCC 1 cut(s) 462
Eco57I CTGAAG 1 cut(s) 855
Eco81I CCTNAGG 1 cut(s) 1017
Eco91I GGTNACC 1 cut(s) 974
EcoO65I GGTNACC 1 cut(s) 974
EcoRI GAATTC 1 cut(s) 523
EcoT14I CCWWGG 1 cut(s) 392
EcoT22I ATGCAT 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 392
FaeI CATG 5 cut(s) 59, 221, 747, 874, 1108
FaqI GGGAC 1 cut(s) 890
FatI CATG 5 cut(s) 55, 217, 743, 870, 1104
FauI CCCGC 1 cut(s) 11
FauNDI CATATG 1 cut(s) 424
FbaI TGATCA 1 cut(s) 910
FblI GTMKAC 1 cut(s) 166
Fnu4HI GCNGC 6 cut(s) 71, 150, 306, 635, 677, 1023
FokI GGATG 2 cut(s) 518, 599
Fsp4HI GCNGC 6 cut(s) 71, 150, 306, 635, 677, 1023
FspBI CTAG 2 cut(s) 62, 294
GlaI GCGC 1 cut(s) 544
GluI GCNGC 6 cut(s) 71, 150, 306, 635, 677, 1023
GsaI CCCAGC 1 cut(s) 1100
HaeIII GGCC 1 cut(s) 1015
HapII CCGG 1 cut(s) 7
HhaI GCGC 1 cut(s) 545
Hin1II CATG 5 cut(s) 59, 221, 747, 874, 1108
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HindIII AAGCTT 1 cut(s) 936
HinfI GANTC 1 cut(s) 467
HpaII CCGG 1 cut(s) 7
HphI GGTGA 2 cut(s) 422, 986
Hpy166II GTNNAC 2 cut(s) 167, 438
Hpy188I TCNGA 7 cut(s) 141, 466, 691, 721, 835, 934, 1011
Hpy188III TCNNGA 5 cut(s) 33, 594, 737, 871, 1086
Hpy8I GTNNAC 2 cut(s) 167, 438
Hpy99I CGWCG 1 cut(s) 18
HpyAV CCTTC 4 cut(s) 283, 391, 903, 974
HpyCH4III ACNGT 5 cut(s) 90, 171, 755, 868, 885
HpyCH4IV ACGT 1 cut(s) 440
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 188, 385
HpyF3I CTNAG 7 cut(s) 43, 492, 498, 556, 735, 1017, 1084
HpySE526I ACGT 1 cut(s) 440
Hsp92II CATG 5 cut(s) 59, 221, 747, 874, 1108
HspAI GCGC 1 cut(s) 543
KpnI GGTACC 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 910
Kzo9I GATC 2 cut(s) 694, 910
LmnI GCTCC 9 cut(s) 9, 35, 136, 232, 358, 810, 856, 965, 1100
Lsp1109I GCAGC 4 cut(s) 317, 621, 688, 1009
LweI GCATC 4 cut(s) 178, 569, 646, 854
MaeI CTAG 2 cut(s) 62, 294
MaeII ACGT 1 cut(s) 440
MaeIII GTNAC 4 cut(s) 108, 598, 617, 974
MalI GATC 2 cut(s) 696, 912
MbiI CCGCTC 1 cut(s) 38
MboI GATC 2 cut(s) 694, 910
MboII GAAGA 4 cut(s) 218, 221, 415, 519
MluCI AATT 9 cut(s) 28, 143, 174, 193, 334, 352, 523, 915, 928
MmeI TCCRAC 2 cut(s) 483, 668
MnlI CCTC 7 cut(s) 144, 172, 399, 507, 867, 1005, 1026
Mph1103I ATGCAT 1 cut(s) 219
MroXI GAANNNNTTC 1 cut(s) 523
MseI TTAA 4 cut(s) 173, 332, 416, 657
MslI CAYNNNNRTG 1 cut(s) 869
MspI CCGG 1 cut(s) 7
MvnI CGCG 2 cut(s) 18, 149
MwoI GCNNNNNNNGC 3 cut(s) 128, 188, 385
NdeI CATATG 1 cut(s) 424
NdeII GATC 2 cut(s) 694, 910
NheI GCTAGC 1 cut(s) 293
NlaIII CATG 5 cut(s) 59, 221, 747, 874, 1108
NlaIV GGNNCC 5 cut(s) 87, 234, 806, 961, 1102
NmuCI GTSAC 2 cut(s) 108, 974
NsiI ATGCAT 1 cut(s) 219
NspI RCATGY 2 cut(s) 221, 747
PagI TCATGA 1 cut(s) 870
PaqCI CACCTGC 1 cut(s) 1016
PceI AGGCCT 1 cut(s) 1015
PdmI GAANNNNTTC 1 cut(s) 523
PfeI GAWTC 1 cut(s) 467
PkrI GCNGC 6 cut(s) 72, 151, 307, 636, 678, 1024
PspEI GGTNACC 1 cut(s) 974
PspFI CCCAGC 1 cut(s) 1096
PspN4I GGNNCC 5 cut(s) 87, 234, 806, 961, 1102
PspPI GGNCC 1 cut(s) 462
PstI CTGCAG 2 cut(s) 475, 1027
PstNI CAGNNNCTG 1 cut(s) 563
RsaI GTAC 5 cut(s) 87, 318, 733, 811, 830
RsaNI GTAC 5 cut(s) 86, 317, 732, 810, 829
RseI CAYNNNNRTG 1 cut(s) 869
SaqAI TTAA 4 cut(s) 173, 332, 416, 657
SatI GCNGC 6 cut(s) 71, 150, 306, 635, 677, 1023
Sau3AI GATC 2 cut(s) 694, 910
Sau96I GGNCC 1 cut(s) 462
ScaI AGTACT 2 cut(s) 318, 733
SfaNI GCATC 4 cut(s) 178, 569, 646, 854
SfcI CTRYAG 3 cut(s) 471, 564, 1023
SinI GGWCC 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 869
SpeI ACTAGT 1 cut(s) 61
Sse9I AATT 9 cut(s) 28, 143, 174, 193, 334, 352, 523, 915, 928
SseBI AGGCCT 1 cut(s) 1015
SsiI CCGC 4 cut(s) 18, 38, 70, 149
SspMI CTAG 2 cut(s) 62, 294
StuI AGGCCT 1 cut(s) 1015
StyI CCWWGG 1 cut(s) 392
TaaI ACNGT 5 cut(s) 90, 171, 755, 868, 885
TaiI ACGT 1 cut(s) 443
TasI AATT 9 cut(s) 28, 143, 174, 193, 334, 352, 523, 915, 928
TatI WGTACW 3 cut(s) 316, 731, 828
TauI GCSGC 2 cut(s) 73, 152
TfiI GAWTC 1 cut(s) 467
Tru1I TTAA 4 cut(s) 173, 332, 416, 657
Tru9I TTAA 4 cut(s) 173, 332, 416, 657
TscAI CASTG 4 cut(s) 80, 291, 846, 871
TseFI GTSAC 2 cut(s) 108, 974
TseI GCWGC 4 cut(s) 305, 634, 676, 1022
Tsp45I GTSAC 2 cut(s) 108, 974
TspDTI ATGAA 2 cut(s) 141, 536
TspGWI ACGGA 1 cut(s) 797
TspRI CASTG 4 cut(s) 80, 291, 846, 871
VpaK11BI GGWCC 1 cut(s) 462
XapI RAATTY 6 cut(s) 143, 193, 334, 523, 915, 928
XceI RCATGY 2 cut(s) 221, 747
XmiI GTMKAC 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 523
XspI CTAG 2 cut(s) 62, 294
ZrmI AGTACT 2 cut(s) 318, 733
Zsp2I ATGCAT 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.