Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002042

Physical Location & Seq

Genomic Coordinates Forward (+)

44497167 .. 44503695

Gene Structure 6529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00363310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCATGTGTTTGATTTGGAGCCGATGGCTGATACTTTGCTTTTGGTTTGTTGCAATGCTTGTAAAAAACCAGTGAAGGCTAGCCAATATGCAGCCCATTCAGTACTTTGCAGGTCATTAAATTCTACGCAGGAAACTAATTTGGAGCTTGATGGAAGTATTGGGCAAAGGAAGCCTCCAAGGAAGGAGAAGAAAAAGTTATTAACTGCATATGCTCACCAGTCGACGTCAGTTAGAGAGCTACAAAGGTCTGAATCTGCAGATGATGTTGCTGTGTCTCAACCTCAGTTGGATGGGAAAATAGGAATGAATTCTTCTTGTGGTATGGGCGCAAAGGGGAACTCAGCATCTGTAGAAACGACCTATATGATGGATGGTTCAGGAGTTACCCCTGAAAATACCAGTTACTCAACAAGTCTGCTGCATCCTCCAACAAAACGATTTAAAATGATAGCAAGTGAGCAGCCACCACTATCAGATGATCTGGGAACAACATCTATTGTATCAGAACTCAAAAGTACTCAGGAAGCATGTCCATACTGTCCTGTTCCCCTTGCTACTAAAGTATATTACTCGCAAAGAAGTAATCGGCTCCGTACAGCACTTTGTCATCTGTACTCTGAGGCAGTGTCATCAAATAAGGAGCTTTGCACTGTCATGAGGGACGAACAGTCTTTGCCTTCTATACAAACACCTGATCAAATTCTCGCACAAAATTCAGACGCTTGCTTGGAGAAATCAATAGGCTCCCTCCCTGCTGGTGACCTATCAAACCAGTTTCCCATTGATAATGTTCCGAGGCCTCAGGCTGCAGGTGTTGGTTTGACAAGAAGCAAACTTCTTTTCAAAACCTTATTCTTTTGCGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sgf11

Protein Analysis

289

Amino Acids

31.37

Weight (kDa)

7.49

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002042)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160
malus_domestica	MD13G1174200.v1.1 MD16G1175500.v1.1 MD16G1175700.v1.1
prunus_persica	Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1
pyrus_communis	pycom13g14980 pycom16g14720
rosa_chinensis	RchiOBHm_Chr4g0420931
rosa_laevigata	RLG00000007719
rosa_multiflora	Rmu_sc0002006.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363310
rosa_rugosa	Rorug04G0167100 Rorug04G0167200
rosa_samantha	Rh4AG228400 Rh4BG231600 Rh4CG243300 Rh4DG227000
rosa_wichuraiana	Rw4G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	803
AatII	GACGTC	1 cut(s)	230
Acc36I	ACCTGC	2 cut(s)	102, 803
AccI	GTMKAC	1 cut(s)	224
AciI	CCGC	1 cut(s)	864
AcsI	RAATTY	4 cut(s)	121, 310, 702, 715
AcyI	GRCGYC	1 cut(s)	227
AfaI	GTAC	4 cut(s)	105, 520, 598, 617
AgsI	TTSAA	1 cut(s)	847
AhdI	GACNNNNNGTC	1 cut(s)	670
AluBI	AGCT	3 cut(s)	148, 241, 646
AluI	AGCT	3 cut(s)	148, 241, 646
Alw26I	GTCTC	1 cut(s)	282
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	1 cut(s)	800
ApeKI	GCWGC	4 cut(s)	92, 421, 463, 809
ApoI	RAATTY	4 cut(s)	121, 310, 702, 715
Asp700I	GAANNNNTTC	1 cut(s)	310
AspLEI	GCGC	1 cut(s)	332
AsuHPI	GGTGA	2 cut(s)	209, 773
AsuNHI	GCTAGC	1 cut(s)	80
AxyI	CCTNAGG	1 cut(s)	804
BbvI	GCAGC	4 cut(s)	104, 408, 475, 796
BccI	CCATC	5 cut(s)	19, 146, 287, 364, 368
BclI	TGATCA	1 cut(s)	697
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	3 cut(s)	258, 351, 810
BfuAI	ACCTGC	2 cut(s)	102, 803
BisI	GCNGC	4 cut(s)	93, 422, 464, 810
BlsI	GCNGC	4 cut(s)	94, 423, 465, 811
BmcAI	AGTACT	2 cut(s)	105, 520
BmeRI	GACNNNNNGTC	1 cut(s)	670
BmiI	GGNNCC	3 cut(s)	21, 593, 748
BmsI	GCATC	2 cut(s)	356, 433
BmtI	GCTAGC	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	179, 797
Bse1I	ACTGG	4 cut(s)	71, 220, 402, 775
Bse21I	CCTNAGG	1 cut(s)	804
Bse3DI	GCAATG	1 cut(s)	61
BseDI	CCNNGG	2 cut(s)	179, 797
BseGI	GGATG	3 cut(s)	298, 379, 424
BseMI	GCAATG	1 cut(s)	61
BseMII	CTCAG	5 cut(s)	299, 357, 536, 612, 818
BseNI	ACTGG	4 cut(s)	71, 220, 402, 775
BseXI	GCAGC	4 cut(s)	104, 408, 475, 796
BshFI	GGCC	1 cut(s)	802
BslFI	GGGAC	1 cut(s)	677
BsmAI	GTCTC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	677
BsnI	GGCC	1 cut(s)	802
Bsp143I	GATC	2 cut(s)	481, 697
BspACI	CCGC	1 cut(s)	864
BspANI	GGCC	1 cut(s)	802
BspCNI	CTCAG	5 cut(s)	298, 356, 535, 613, 817
BspHI	TCATGA	1 cut(s)	657
BspLI	GGNNCC	3 cut(s)	21, 593, 748
BspMAI	CTGCAG	2 cut(s)	262, 814
BspMI	ACCTGC	2 cut(s)	102, 803
BspOI	GCTAGC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	61
BsrI	ACTGG	4 cut(s)	71, 220, 402, 775
BssECI	CCNNGG	2 cut(s)	179, 797
BssMI	GATC	2 cut(s)	481, 697
BssNI	GRCGYC	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	179
Bst4CI	ACNGT	3 cut(s)	542, 655, 672
BstACI	GRCGYC	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	82, 727
BstDEI	CTNAG	5 cut(s)	285, 343, 522, 621, 804
BstEII	GGTNACC	1 cut(s)	761
BstF5I	GGATG	3 cut(s)	298, 379, 424
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	2 cut(s)	484, 700
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	2 cut(s)	481, 697
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNSI	RCATGY	2 cut(s)	8, 534
BstPI	GGTNACC	1 cut(s)	761
BstSFI	CTRYAG	3 cut(s)	258, 351, 810
BstV1I	GCAGC	4 cut(s)	104, 408, 475, 796
Bsu36I	CCTNAGG	1 cut(s)	804
BsuRI	GGCC	1 cut(s)	802
BtsCI	GGATG	3 cut(s)	298, 379, 424
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	3 cut(s)	78, 633, 651
BveI	ACCTGC	2 cut(s)	102, 803
Cac8I	GCNNGC	2 cut(s)	82, 727
CaiI	CAGNNNCTG	1 cut(s)	350
CciI	TCATGA	1 cut(s)	657
CfoI	GCGC	1 cut(s)	332
CseI	GACGC	1 cut(s)	731
Csp6I	GTAC	4 cut(s)	104, 519, 597, 616
CviAII	CATG	3 cut(s)	5, 531, 658
CviQI	GTAC	4 cut(s)	104, 519, 597, 616
DdeI	CTNAG	5 cut(s)	285, 343, 522, 621, 804
DpnI	GATC	2 cut(s)	483, 699
DpnII	GATC	2 cut(s)	481, 697
DraI	TTTAAA	1 cut(s)	445
DriI	GACNNNNNGTC	1 cut(s)	670
Eam1105I	GACNNNNNGTC	1 cut(s)	670
Eco130I	CCWWGG	1 cut(s)	179
Eco147I	AGGCCT	1 cut(s)	802
Eco81I	CCTNAGG	1 cut(s)	804
Eco91I	GGTNACC	1 cut(s)	761
EcoO65I	GGTNACC	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	179
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	3 cut(s)	8, 534, 661
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	3 cut(s)	4, 530, 657
FauI	CCCGC	1 cut(s)	857
FauNDI	CATATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	697
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	4 cut(s)	93, 422, 464, 810
FokI	GGATG	3 cut(s)	305, 386, 411
Fsp4HI	GCNGC	4 cut(s)	93, 422, 464, 810
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	4 cut(s)	93, 422, 464, 810
HaeIII	GGCC	1 cut(s)	802
HgaI	GACGC	1 cut(s)	731
HhaI	GCGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	3 cut(s)	8, 534, 661
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	1 cut(s)	254
HphI	GGTGA	2 cut(s)	209, 773
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	6 cut(s)	253, 478, 508, 622, 721, 798
Hpy188III	TCNNGA	3 cut(s)	381, 524, 658
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	3 cut(s)	70, 178, 690
HpyCH4III	ACNGT	3 cut(s)	542, 655, 672
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	9 cut(s)	4, 54, 92, 111, 209, 260, 424, 651, 812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	5 cut(s)	285, 343, 522, 621, 804
HpySE526I	ACGT	1 cut(s)	227
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	3 cut(s)	8, 534, 661
HspAI	GCGC	1 cut(s)	330
Ksp22I	TGATCA	1 cut(s)	697
Kzo9I	GATC	2 cut(s)	481, 697
LmnI	GCTCC	5 cut(s)	19, 145, 597, 643, 752
Lsp1109I	GCAGC	4 cut(s)	104, 408, 475, 796
LweI	GCATC	2 cut(s)	356, 433
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	3 cut(s)	385, 404, 761
MalI	GATC	2 cut(s)	483, 699
MboI	GATC	2 cut(s)	481, 697
MboII	GAAGA	2 cut(s)	202, 306
MluCI	AATT	5 cut(s)	121, 139, 310, 702, 715
MmeI	TCCRAC	2 cut(s)	270, 455
MnlI	CCTC	8 cut(s)	186, 294, 438, 616, 654, 761, 792, 813
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	310
MseI	TTAA	3 cut(s)	119, 203, 444
MslI	CAYNNNNRTG	1 cut(s)	656
MwoI	GCNNNNNNNGC	1 cut(s)	172
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	2 cut(s)	481, 697
NheI	GCTAGC	1 cut(s)	80
NlaIII	CATG	3 cut(s)	8, 534, 661
NlaIV	GGNNCC	3 cut(s)	21, 593, 748
NmuCI	GTSAC	1 cut(s)	761
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 534
PagI	TCATGA	1 cut(s)	657
PaqCI	CACCTGC	1 cut(s)	803
PceI	AGGCCT	1 cut(s)	802
PdmI	GAANNNNTTC	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	4 cut(s)	94, 423, 465, 811
PspEI	GGTNACC	1 cut(s)	761
PspN4I	GGNNCC	3 cut(s)	21, 593, 748
PstI	CTGCAG	2 cut(s)	262, 814
PstNI	CAGNNNCTG	1 cut(s)	350
RsaI	GTAC	4 cut(s)	105, 520, 598, 617
RsaNI	GTAC	4 cut(s)	104, 519, 597, 616
RseI	CAYNNNNRTG	1 cut(s)	656
SalI	GTCGAC	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	119, 203, 444
SatI	GCNGC	4 cut(s)	93, 422, 464, 810
Sau3AI	GATC	2 cut(s)	481, 697
ScaI	AGTACT	2 cut(s)	105, 520
SfaNI	GCATC	2 cut(s)	356, 433
SfcI	CTRYAG	3 cut(s)	258, 351, 810
SmiMI	CAYNNNNRTG	1 cut(s)	656
Sse9I	AATT	5 cut(s)	121, 139, 310, 702, 715
SseBI	AGGCCT	1 cut(s)	802
SsiI	CCGC	1 cut(s)	864
SspMI	CTAG	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	802
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	3 cut(s)	542, 655, 672
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	224
TasI	AATT	5 cut(s)	121, 139, 310, 702, 715
TatI	WGTACW	3 cut(s)	103, 518, 615
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	3 cut(s)	119, 203, 444
Tru9I	TTAA	3 cut(s)	119, 203, 444
TscAI	CASTG	3 cut(s)	78, 633, 658
TseFI	GTSAC	1 cut(s)	761
TseI	GCWGC	4 cut(s)	92, 421, 463, 809
Tsp45I	GTSAC	1 cut(s)	761
TspDTI	ATGAA	1 cut(s)	323
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	3 cut(s)	78, 633, 658
XapI	RAATTY	4 cut(s)	121, 310, 702, 715
XceI	RCATGY	2 cut(s)	8, 534
XmiI	GTMKAC	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	310
XspI	CTAG	1 cut(s)	81
ZraI	GACGTC	1 cut(s)	228
ZrmI	AGTACT	2 cut(s)	105, 520
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.