Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002042

Physical Location & Seq

Genomic Coordinates Forward (+)

39615201 .. 39621627

Gene Structure 6427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG231600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGTTTGCTCGGTTGGAAGTGGGAGGATGGCGGTGATGGCAAGGGTTCTTGCAGGTGGGAGTGTGTCACATAGCCTTGCAGAGGAAGCTCCTCATCAGAAATTCGCGGCTCATTTGATTTGTAGACAGTTAATTGAGGCAAATGATGCAAATTTGCTTGACGAAGAAGATATGCATGTGTTTGATTTGGAGCCGATGGCTGATACTTTGCTTTTGGTTTGTTGCAATGCTTGTAAAAAACCAGTGAAGGCTAGCCAATATGCAGCCCATTCAGTACTTTGCAGGTCATTAAATTCTACGCAGGAAACTAATTTGGAGCTTGATGGAAGTATTGGGCAAAGGAAGCCTCCAAGGAAGGAGAAGAAAAAGTTATTAACTGCATATGCTCACCAGTCAACGTCAGTTAGAGAGCTACAAAGATCTGAATCTGCAGATGATGTTGCTGTGTCTCAACCTCAGTTGGATGGGAAAATAGGAATGAATTCTTCTTGTGGTACGGGCTCAAAGGGGAACTCAGCATCTGTAGAAACGACCTATATGATGGATGGTTCAGGAGTTACCCCTGAAACTACCAGTTACTCAACAAGTCTGCTGCATCCTCCAACAAAACGATTTAAAATGATAGCAGGTGAGCAGCCACCACTGTCAGATGATCTCGGAACAACATCTATTGTATCAGAATTCAAAAGTACTCAGGAAGCATGTCCATACTGTCCTGTTCCCCTTGCTACTAAAGTATATTACTCGCAAAGAACTAATCGGCTCCGTACAGCACTTTGTCATCTGTACTCTGAGGCAGTGACATCAAATAAGGAGCTTTGCACTGTCATGAGGGACGAACAGTCTTTGCCTTCTATACGAACACCTGATCAAATTCTCACACAAAATTCAGAAGCTTGCTTGGAGAAATCAATAGGCTCCCTGCCTGCTGGTGACCTATCAAACCAGTTTCCCATTGATAATGTTCCGAGGCCTCAGGCTGCAGGTGTTGGTTTGACAAGAAGCAAACTTCTTTCAAAACCTTATTCTTTTGCGGGTAGCTCAGGACAATCGCTGGGAACCATGCAACAGCGAAATGGCAGAGTTCCTGTTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sgf11

Protein Analysis

365

Amino Acids

39.36

Weight (kDa)

7.05

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002042)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160
malus_domestica	MD13G1174200.v1.1 MD16G1175500.v1.1 MD16G1175700.v1.1
prunus_persica	Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1
pyrus_communis	pycom13g14980 pycom16g14720
rosa_chinensis	RchiOBHm_Chr4g0420931
rosa_laevigata	RLG00000007719
rosa_multiflora	Rmu_sc0002006.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363310
rosa_rugosa	Rorug04G0167100 Rorug04G0167200
rosa_samantha	Rh4AG228400 Rh4BG231600 Rh4CG243300 Rh4DG227000
rosa_wichuraiana	Rw4G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	44, 617, 974
Acc36I	ACCTGC	4 cut(s)	44, 273, 617, 974
AccI	GTMKAC	1 cut(s)	124
AccII	CGCG	1 cut(s)	107
AciI	CCGC	3 cut(s)	32, 107, 1034
AcsI	RAATTY	7 cut(s)	101, 151, 292, 481, 680, 873, 886
AfaI	GTAC	5 cut(s)	276, 496, 691, 769, 788
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	685, 1017
AhdI	GACNNNNNGTC	1 cut(s)	841
AluBI	AGCT	6 cut(s)	89, 319, 412, 817, 896, 1041
AluI	AGCT	6 cut(s)	89, 319, 412, 817, 896, 1041
Alw26I	GTCTC	1 cut(s)	453
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	1 cut(s)	971
ApeKI	GCWGC	4 cut(s)	263, 592, 634, 980
ApoI	RAATTY	7 cut(s)	101, 151, 292, 481, 680, 873, 886
Asp700I	GAANNNNTTC	1 cut(s)	481
AsuHPI	GGTGA	4 cut(s)	46, 380, 641, 944
AsuNHI	GCTAGC	1 cut(s)	251
AxyI	CCTNAGG	1 cut(s)	975
BanII	GRGCYC	1 cut(s)	503
BbvI	GCAGC	4 cut(s)	275, 579, 646, 967
BccI	CCATC	7 cut(s)	22, 31, 190, 317, 458, 535, 539
BclI	TGATCA	1 cut(s)	868
BcoDI	GTCTC	1 cut(s)	453
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	3 cut(s)	429, 522, 981
BfuAI	ACCTGC	4 cut(s)	44, 273, 617, 974
BglII	AGATCT	1 cut(s)	419
BisI	GCNGC	5 cut(s)	108, 264, 593, 635, 981
BlsI	GCNGC	5 cut(s)	109, 265, 594, 636, 982
BmcAI	AGTACT	2 cut(s)	276, 691
BmeRI	GACNNNNNGTC	1 cut(s)	841
BmiI	GGNNCC	4 cut(s)	192, 764, 919, 1060
BmsI	GCATC	3 cut(s)	136, 527, 604
BmtI	GCTAGC	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	1042
BsaBI	GATNNNNATC	1 cut(s)	424
BsaJI	CCNNGG	2 cut(s)	350, 968
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	4 cut(s)	242, 391, 573, 946
Bse21I	CCTNAGG	1 cut(s)	975
Bse3DI	GCAATG	1 cut(s)	232
Bse8I	GATNNNNATC	1 cut(s)	424
BseDI	CCNNGG	2 cut(s)	350, 968
BseGI	GGATG	4 cut(s)	33, 469, 550, 595
BseJI	GATNNNNATC	1 cut(s)	424
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	232
BseMII	CTCAG	6 cut(s)	470, 528, 707, 783, 989, 1056
BseNI	ACTGG	4 cut(s)	242, 391, 573, 946
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	4 cut(s)	275, 579, 646, 967
BseYI	CCCAGC	1 cut(s)	1054
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	973
BslFI	GGGAC	1 cut(s)	848
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	453
BsmFI	GGGAC	1 cut(s)	848
BsnI	GGCC	1 cut(s)	973
Bsp1286I	GDGCHC	1 cut(s)	503
Bsp143I	GATC	3 cut(s)	419, 652, 868
BspACI	CCGC	3 cut(s)	32, 107, 1034
BspANI	GGCC	1 cut(s)	973
BspCNI	CTCAG	6 cut(s)	469, 527, 706, 784, 988, 1055
BspFNI	CGCG	1 cut(s)	107
BspHI	TCATGA	1 cut(s)	828
BspLI	GGNNCC	4 cut(s)	192, 764, 919, 1060
BspMAI	CTGCAG	2 cut(s)	433, 985
BspMI	ACCTGC	4 cut(s)	44, 273, 617, 974
BspOI	GCTAGC	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	232
BsrI	ACTGG	4 cut(s)	242, 391, 573, 946
BssECI	CCNNGG	2 cut(s)	350, 968
BssMI	GATC	3 cut(s)	419, 652, 868
BssT1I	CCWWGG	1 cut(s)	350
Bst4CI	ACNGT	5 cut(s)	129, 645, 713, 826, 843
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstC8I	GCNNGC	3 cut(s)	253, 898, 927
BstDEI	CTNAG	6 cut(s)	456, 514, 693, 792, 975, 1042
BstEII	GGTNACC	1 cut(s)	932
BstENI	CCTNNNNNAGG	1 cut(s)	80
BstF5I	GGATG	4 cut(s)	33, 469, 550, 595
BstFNI	CGCG	1 cut(s)	107
BstKTI	GATC	3 cut(s)	422, 655, 871
BstMAI	GTCTC	1 cut(s)	453
BstMBI	GATC	3 cut(s)	419, 652, 868
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 86, 146, 343
BstNSI	RCATGY	2 cut(s)	179, 705
BstPI	GGTNACC	1 cut(s)	932
BstSFI	CTRYAG	3 cut(s)	429, 522, 981
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	4 cut(s)	275, 579, 646, 967
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
Bsu36I	CCTNAGG	1 cut(s)	975
BsuRI	GGCC	1 cut(s)	973
BtsCI	GGATG	4 cut(s)	33, 469, 550, 595
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	4 cut(s)	249, 641, 804, 822
BveI	ACCTGC	4 cut(s)	44, 273, 617, 974
Cac8I	GCNNGC	3 cut(s)	253, 898, 927
CaiI	CAGNNNCTG	1 cut(s)	521
CciI	TCATGA	1 cut(s)	828
Csp6I	GTAC	5 cut(s)	275, 495, 690, 768, 787
CviAII	CATG	4 cut(s)	176, 702, 829, 1063
CviQI	GTAC	5 cut(s)	275, 495, 690, 768, 787
DdeI	CTNAG	6 cut(s)	456, 514, 693, 792, 975, 1042
DpnI	GATC	3 cut(s)	421, 654, 870
DpnII	GATC	3 cut(s)	419, 652, 868
DraI	TTTAAA	1 cut(s)	616
DriI	GACNNNNNGTC	1 cut(s)	841
Eam1105I	GACNNNNNGTC	1 cut(s)	841
Eco130I	CCWWGG	1 cut(s)	350
Eco147I	AGGCCT	1 cut(s)	973
Eco24I	GRGCYC	1 cut(s)	503
Eco81I	CCTNAGG	1 cut(s)	975
Eco91I	GGTNACC	1 cut(s)	932
EcoNI	CCTNNNNNAGG	1 cut(s)	80
EcoO65I	GGTNACC	1 cut(s)	932
EcoRI	GAATTC	2 cut(s)	481, 680
EcoT14I	CCWWGG	1 cut(s)	350
EcoT22I	ATGCAT	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	503
ErhI	CCWWGG	1 cut(s)	350
FaeI	CATG	4 cut(s)	179, 705, 832, 1066
FaqI	GGGAC	1 cut(s)	848
FatI	CATG	4 cut(s)	175, 701, 828, 1062
FauI	CCCGC	1 cut(s)	1027
FauNDI	CATATG	1 cut(s)	382
FbaI	TGATCA	1 cut(s)	868
FblI	GTMKAC	1 cut(s)	124
Fnu4HI	GCNGC	5 cut(s)	108, 264, 593, 635, 981
FokI	GGATG	4 cut(s)	40, 476, 557, 582
FriOI	GRGCYC	1 cut(s)	503
Fsp4HI	GCNGC	5 cut(s)	108, 264, 593, 635, 981
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	5 cut(s)	108, 264, 593, 635, 981
GsaI	CCCAGC	1 cut(s)	1058
HaeIII	GGCC	1 cut(s)	973
Hin1II	CATG	4 cut(s)	179, 705, 832, 1066
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HindIII	AAGCTT	1 cut(s)	894
HinfI	GANTC	1 cut(s)	425
HphI	GGTGA	4 cut(s)	46, 380, 641, 944
Hpy166II	GTNNAC	2 cut(s)	125, 396
Hpy188I	TCNGA	8 cut(s)	99, 424, 649, 659, 679, 793, 892, 969
Hpy188III	TCNNGA	4 cut(s)	552, 695, 829, 1044
Hpy8I	GTNNAC	2 cut(s)	125, 396
HpyAV	CCTTC	3 cut(s)	241, 349, 861
HpyCH4III	ACNGT	5 cut(s)	129, 645, 713, 826, 843
HpyCH4IV	ACGT	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 86, 146, 343
HpyF3I	CTNAG	6 cut(s)	456, 514, 693, 792, 975, 1042
HpySE526I	ACGT	1 cut(s)	398
Hsp92II	CATG	4 cut(s)	179, 705, 832, 1066
Ksp22I	TGATCA	1 cut(s)	868
Kzo9I	GATC	3 cut(s)	419, 652, 868
LmnI	GCTCC	6 cut(s)	94, 190, 316, 768, 814, 923
Lsp1109I	GCAGC	4 cut(s)	275, 579, 646, 967
LweI	GCATC	3 cut(s)	136, 527, 604
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	5 cut(s)	66, 556, 575, 799, 932
MalI	GATC	3 cut(s)	421, 654, 870
MboI	GATC	3 cut(s)	419, 652, 868
MboII	GAAGA	4 cut(s)	176, 179, 373, 477
MflI	RGATCY	1 cut(s)	419
MhlI	GDGCHC	1 cut(s)	503
MluCI	AATT	9 cut(s)	101, 132, 151, 292, 310, 481, 680, 873, 886
MmeI	TCCRAC	2 cut(s)	441, 626
Mph1103I	ATGCAT	1 cut(s)	177
MroXI	GAANNNNTTC	1 cut(s)	481
MseI	TTAA	4 cut(s)	131, 290, 374, 615
MslI	CAYNNNNRTG	1 cut(s)	827
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	4 cut(s)	38, 86, 146, 343
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	3 cut(s)	419, 652, 868
NheI	GCTAGC	1 cut(s)	251
NlaIII	CATG	4 cut(s)	179, 705, 832, 1066
NlaIV	GGNNCC	4 cut(s)	192, 764, 919, 1060
NmuCI	GTSAC	3 cut(s)	66, 799, 932
NsiI	ATGCAT	1 cut(s)	177
NspI	RCATGY	2 cut(s)	179, 705
PagI	TCATGA	1 cut(s)	828
PaqCI	CACCTGC	3 cut(s)	44, 617, 974
PceI	AGGCCT	1 cut(s)	973
PdmI	GAANNNNTTC	1 cut(s)	481
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	5 cut(s)	109, 265, 594, 636, 982
PspEI	GGTNACC	1 cut(s)	932
PspFI	CCCAGC	1 cut(s)	1054
PspN4I	GGNNCC	4 cut(s)	192, 764, 919, 1060
PstI	CTGCAG	2 cut(s)	433, 985
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	419
RsaI	GTAC	5 cut(s)	276, 496, 691, 769, 788
RsaNI	GTAC	5 cut(s)	275, 495, 690, 768, 787
RseI	CAYNNNNRTG	1 cut(s)	827
SaqAI	TTAA	4 cut(s)	131, 290, 374, 615
SatI	GCNGC	5 cut(s)	108, 264, 593, 635, 981
Sau3AI	GATC	3 cut(s)	419, 652, 868
ScaI	AGTACT	2 cut(s)	276, 691
SduI	GDGCHC	1 cut(s)	503
SfaNI	GCATC	3 cut(s)	136, 527, 604
SfcI	CTRYAG	3 cut(s)	429, 522, 981
SmiMI	CAYNNNNRTG	1 cut(s)	827
Sse9I	AATT	9 cut(s)	101, 132, 151, 292, 310, 481, 680, 873, 886
SseBI	AGGCCT	1 cut(s)	973
SsiI	CCGC	3 cut(s)	32, 107, 1034
SspMI	CTAG	1 cut(s)	252
StuI	AGGCCT	1 cut(s)	973
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	5 cut(s)	129, 645, 713, 826, 843
TaiI	ACGT	1 cut(s)	401
TasI	AATT	9 cut(s)	101, 132, 151, 292, 310, 481, 680, 873, 886
TatI	WGTACW	3 cut(s)	274, 689, 786
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	4 cut(s)	131, 290, 374, 615
Tru9I	TTAA	4 cut(s)	131, 290, 374, 615
TscAI	CASTG	4 cut(s)	249, 648, 804, 829
TseFI	GTSAC	3 cut(s)	66, 799, 932
TseI	GCWGC	4 cut(s)	263, 592, 634, 980
Tsp45I	GTSAC	3 cut(s)	66, 799, 932
TspDTI	ATGAA	1 cut(s)	494
TspGWI	ACGGA	1 cut(s)	755
TspRI	CASTG	4 cut(s)	249, 648, 804, 829
XagI	CCTNNNNNAGG	1 cut(s)	80
XapI	RAATTY	7 cut(s)	101, 151, 292, 481, 680, 873, 886
XceI	RCATGY	2 cut(s)	179, 705
XmiI	GTMKAC	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	481
XspI	CTAG	1 cut(s)	252
ZrmI	AGTACT	2 cut(s)	276, 691
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.