Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002042

Physical Location & Seq

Genomic Coordinates Forward (+)

46625280 .. 46631780

Gene Structure 6501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39063

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGTTTGCTCGGTTGGAAGTGGGAGGATGGCGGTCATGGCAAGGGTTCTTGCAGGTGGGAGTGTGTCACATAGCCTTGCAGAAGAAGCTCCACATCAGAAATTTGCGGCTCATTTGATTTGTAGACAGTTAATTGAGGCAAATGATGCAAATTTGCTTGACGAAGAAGATATGCATGTGTTTGATTTGGAGCCGATGGCTGATACTTTGCTCTTGGTTTGTTGCAATGCTTGTAAAAAACCAGTGAAGGCTAGCCAATATGCAGCCCATTCAGTACTTTGCAGGTCATTAAATTCTACGCAGGAAACTAATTTGGAGCTTGATGGAAGTATTGGGCAAAGGAAGCCTCCAAGGAAGGAGAAGAAAAAGTTATTAACTGCATATGCTCACCAGGCAACGTCAGTTAGAGAGCTACAAAGGTCTGAATCTGCAGATGATATTGCTGTGTCTCAGCCTCAGTTGGATGGGAAAATAGGAATGAATTCTTCTTGTGGTATGGGCGCAAAGGGGAACTCGGCATCTGTAGAAACAACCTATATGATGGATGGATCAGGAGTTACCCCTGAAAATACCAGTTACTCAACAAGTCTGCTGCATCCTCCAACAAAACGATTTAAAATGATAGCAAGTGAGCAGCCACCACTATCAGATGATCTGGGAACAACATCTATTGTATCAGAACTCAAAAGTACTCAGGAAGCATGTCCATACTGTCCTGTTCCCCTTGCTACTAAAGTATATTACTCTCAAAGAAGTAATCGGCTCCGTACAGCACTTTGTCATCTGTACTCTGAGGCAGTGGCATCAAATAAGGAGCTTTGCACTGTCATGAGGGACGAACAGTCTTTGCCTTCTATACGAACACCTGATCAAATTCTCGCACAAAATTCAGAAGATTGCTTGGAGAAATCAATAGGCTCCCTTCCTGCTGGTGACCTATCAAACCAGTTTCCCATTGATAATGTTCCGAGGCCTCAGGCTGCAGGTGTTGGTTTGACAAGAACCAAACTTCTTTCAAAACCTTATTCTTTTGCGGGTAGCTCAGGACAATCGTTGGGAACCATGCAACAGCGAAATGGCAGAGTTCCTGTTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sgf11

Protein Analysis

365

Amino Acids

39.36

Weight (kDa)

6.71

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002042)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160
malus_domestica	MD13G1174200.v1.1 MD16G1175500.v1.1 MD16G1175700.v1.1
prunus_persica	Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1
pyrus_communis	pycom13g14980 pycom16g14720
rosa_chinensis	RchiOBHm_Chr4g0420931
rosa_laevigata	RLG00000007719
rosa_multiflora	Rmu_sc0002006.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363310
rosa_rugosa	Rorug04G0167100 Rorug04G0167200
rosa_samantha	Rh4AG228400 Rh4BG231600 Rh4CG243300 Rh4DG227000
rosa_wichuraiana	Rw4G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	44, 974
Acc36I	ACCTGC	3 cut(s)	44, 273, 974
AccI	GTMKAC	1 cut(s)	124
AciI	CCGC	3 cut(s)	32, 107, 1034
AclWI	GGATC	1 cut(s)	556
AcsI	RAATTY	6 cut(s)	101, 151, 292, 481, 873, 886
AfaI	GTAC	4 cut(s)	276, 691, 769, 788
AgsI	TTSAA	1 cut(s)	1017
AhdI	GACNNNNNGTC	1 cut(s)	841
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	5 cut(s)	89, 319, 412, 817, 1041
AluI	AGCT	5 cut(s)	89, 319, 412, 817, 1041
Alw26I	GTCTC	1 cut(s)	453
AlwI	GGATC	1 cut(s)	556
AoxI	GGCC	1 cut(s)	971
ApeKI	GCWGC	4 cut(s)	263, 592, 634, 980
ApoI	RAATTY	6 cut(s)	101, 151, 292, 481, 873, 886
Asp700I	GAANNNNTTC	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	503
AsuHPI	GGTGA	2 cut(s)	380, 944
AsuNHI	GCTAGC	1 cut(s)	251
AxyI	CCTNAGG	1 cut(s)	975
BbvI	GCAGC	4 cut(s)	275, 579, 646, 967
BccI	CCATC	6 cut(s)	22, 190, 317, 458, 535, 539
BciT130I	CCWGG	1 cut(s)	392
BclI	TGATCA	1 cut(s)	868
BcoDI	GTCTC	1 cut(s)	453
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	3 cut(s)	429, 522, 981
BfuAI	ACCTGC	3 cut(s)	44, 273, 974
BisI	GCNGC	5 cut(s)	108, 264, 593, 635, 981
BlsI	GCNGC	5 cut(s)	109, 265, 594, 636, 982
BmcAI	AGTACT	2 cut(s)	276, 691
Bme1390I	CCNGG	1 cut(s)	392
BmeRI	GACNNNNNGTC	1 cut(s)	841
BmiI	GGNNCC	4 cut(s)	192, 764, 919, 1060
BmrFI	CCNGG	1 cut(s)	392
BmsI	GCATC	4 cut(s)	136, 527, 604, 812
BmtI	GCTAGC	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	1042
BsaJI	CCNNGG	2 cut(s)	350, 968
Bse1I	ACTGG	3 cut(s)	242, 573, 946
Bse21I	CCTNAGG	1 cut(s)	975
Bse3DI	GCAATG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	2 cut(s)	350, 968
BseGI	GGATG	4 cut(s)	33, 469, 550, 595
BseMI	GCAATG	1 cut(s)	232
BseMII	CTCAG	6 cut(s)	464, 470, 707, 783, 989, 1056
BseNI	ACTGG	3 cut(s)	242, 573, 946
BseXI	GCAGC	4 cut(s)	275, 579, 646, 967
BshFI	GGCC	1 cut(s)	973
BslFI	GGGAC	1 cut(s)	848
BsmAI	GTCTC	1 cut(s)	453
BsmFI	GGGAC	1 cut(s)	848
BsnI	GGCC	1 cut(s)	973
Bsp143I	GATC	3 cut(s)	548, 652, 868
BspACI	CCGC	3 cut(s)	32, 107, 1034
BspANI	GGCC	1 cut(s)	973
BspCNI	CTCAG	6 cut(s)	463, 469, 706, 784, 988, 1055
BspHI	TCATGA	1 cut(s)	828
BspLI	GGNNCC	4 cut(s)	192, 764, 919, 1060
BspMAI	CTGCAG	2 cut(s)	433, 985
BspMI	ACCTGC	3 cut(s)	44, 273, 974
BspOI	GCTAGC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	556
BsrDI	GCAATG	1 cut(s)	232
BsrI	ACTGG	3 cut(s)	242, 573, 946
BssECI	CCNNGG	2 cut(s)	350, 968
BssMI	GATC	3 cut(s)	548, 652, 868
BssT1I	CCWWGG	1 cut(s)	350
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	4 cut(s)	129, 713, 826, 843
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	6 cut(s)	450, 456, 693, 792, 975, 1042
BstEII	GGTNACC	1 cut(s)	932
BstF5I	GGATG	4 cut(s)	33, 469, 550, 595
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	3 cut(s)	551, 655, 871
BstMAI	GTCTC	1 cut(s)	453
BstMBI	GATC	3 cut(s)	548, 652, 868
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 86, 146, 343, 392
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	2 cut(s)	179, 705
BstPI	GGTNACC	1 cut(s)	932
BstSCI	CCNGG	1 cut(s)	390
BstSFI	CTRYAG	3 cut(s)	429, 522, 981
BstV1I	GCAGC	4 cut(s)	275, 579, 646, 967
Bsu36I	CCTNAGG	1 cut(s)	975
BsuRI	GGCC	1 cut(s)	973
BtsCI	GGATG	4 cut(s)	33, 469, 550, 595
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	3 cut(s)	249, 804, 822
BveI	ACCTGC	3 cut(s)	44, 273, 974
Cac8I	GCNNGC	1 cut(s)	253
CciI	TCATGA	1 cut(s)	828
CfoI	GCGC	1 cut(s)	503
Csp6I	GTAC	4 cut(s)	275, 690, 768, 787
CviAII	CATG	5 cut(s)	37, 176, 702, 829, 1063
CviQI	GTAC	4 cut(s)	275, 690, 768, 787
DdeI	CTNAG	6 cut(s)	450, 456, 693, 792, 975, 1042
DpnI	GATC	3 cut(s)	550, 654, 870
DpnII	GATC	3 cut(s)	548, 652, 868
DraI	TTTAAA	1 cut(s)	616
DriI	GACNNNNNGTC	1 cut(s)	841
Eam1105I	GACNNNNNGTC	1 cut(s)	841
Eco130I	CCWWGG	1 cut(s)	350
Eco147I	AGGCCT	1 cut(s)	973
Eco81I	CCTNAGG	1 cut(s)	975
Eco91I	GGTNACC	1 cut(s)	932
EcoO65I	GGTNACC	1 cut(s)	932
EcoRI	GAATTC	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	350
EcoT22I	ATGCAT	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	350
FaeI	CATG	5 cut(s)	40, 179, 705, 832, 1066
FaqI	GGGAC	1 cut(s)	848
FatI	CATG	5 cut(s)	36, 175, 701, 828, 1062
FauI	CCCGC	1 cut(s)	1027
FauNDI	CATATG	1 cut(s)	382
FbaI	TGATCA	1 cut(s)	868
FblI	GTMKAC	1 cut(s)	124
Fnu4HI	GCNGC	5 cut(s)	108, 264, 593, 635, 981
FokI	GGATG	4 cut(s)	40, 476, 557, 582
Fsp4HI	GCNGC	5 cut(s)	108, 264, 593, 635, 981
FspBI	CTAG	1 cut(s)	252
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	5 cut(s)	108, 264, 593, 635, 981
HaeIII	GGCC	1 cut(s)	973
HhaI	GCGC	1 cut(s)	503
Hin1II	CATG	5 cut(s)	40, 179, 705, 832, 1066
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HinfI	GANTC	1 cut(s)	425
HphI	GGTGA	2 cut(s)	380, 944
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	7 cut(s)	99, 424, 649, 679, 793, 892, 969
Hpy188III	TCNNGA	4 cut(s)	552, 695, 829, 1044
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	4 cut(s)	241, 349, 861, 932
HpyCH4III	ACNGT	4 cut(s)	129, 713, 826, 843
HpyCH4IV	ACGT	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 86, 146, 343, 392
HpyF3I	CTNAG	6 cut(s)	450, 456, 693, 792, 975, 1042
HpySE526I	ACGT	1 cut(s)	398
Hsp92II	CATG	5 cut(s)	40, 179, 705, 832, 1066
HspAI	GCGC	1 cut(s)	501
Ksp22I	TGATCA	1 cut(s)	868
Kzo9I	GATC	3 cut(s)	548, 652, 868
LmnI	GCTCC	6 cut(s)	94, 190, 316, 768, 814, 923
Lsp1109I	GCAGC	4 cut(s)	275, 579, 646, 967
LweI	GCATC	4 cut(s)	136, 527, 604, 812
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	4 cut(s)	66, 556, 575, 932
MalI	GATC	3 cut(s)	550, 654, 870
MboI	GATC	3 cut(s)	548, 652, 868
MboII	GAAGA	6 cut(s)	95, 176, 179, 373, 477, 905
MluCI	AATT	8 cut(s)	101, 132, 151, 292, 310, 481, 873, 886
MmeI	TCCRAC	2 cut(s)	441, 626
MnlI	CCTC	9 cut(s)	18, 130, 357, 465, 609, 787, 825, 963, 984
Mph1103I	ATGCAT	1 cut(s)	177
MroXI	GAANNNNTTC	1 cut(s)	481
MseI	TTAA	4 cut(s)	131, 290, 374, 615
MslI	CAYNNNNRTG	1 cut(s)	827
MspR9I	CCNGG	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	5 cut(s)	38, 86, 146, 343, 392
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	3 cut(s)	548, 652, 868
NheI	GCTAGC	1 cut(s)	251
NlaIII	CATG	5 cut(s)	40, 179, 705, 832, 1066
NlaIV	GGNNCC	4 cut(s)	192, 764, 919, 1060
NmeAIII	GCCGAG	1 cut(s)	494
NmuCI	GTSAC	2 cut(s)	66, 932
NsiI	ATGCAT	1 cut(s)	177
NspI	RCATGY	2 cut(s)	179, 705
PagI	TCATGA	1 cut(s)	828
PaqCI	CACCTGC	2 cut(s)	44, 974
PceI	AGGCCT	1 cut(s)	973
PdmI	GAANNNNTTC	1 cut(s)	481
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	5 cut(s)	109, 265, 594, 636, 982
Psp6I	CCWGG	1 cut(s)	390
PspEI	GGTNACC	1 cut(s)	932
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	4 cut(s)	192, 764, 919, 1060
PstI	CTGCAG	2 cut(s)	433, 985
RsaI	GTAC	4 cut(s)	276, 691, 769, 788
RsaNI	GTAC	4 cut(s)	275, 690, 768, 787
RseI	CAYNNNNRTG	1 cut(s)	827
SaqAI	TTAA	4 cut(s)	131, 290, 374, 615
SatI	GCNGC	5 cut(s)	108, 264, 593, 635, 981
Sau3AI	GATC	3 cut(s)	548, 652, 868
ScaI	AGTACT	2 cut(s)	276, 691
ScrFI	CCNGG	1 cut(s)	392
SfaNI	GCATC	4 cut(s)	136, 527, 604, 812
SfcI	CTRYAG	3 cut(s)	429, 522, 981
SmiMI	CAYNNNNRTG	1 cut(s)	827
Sse9I	AATT	8 cut(s)	101, 132, 151, 292, 310, 481, 873, 886
SseBI	AGGCCT	1 cut(s)	973
SsiI	CCGC	3 cut(s)	32, 107, 1034
SspMI	CTAG	1 cut(s)	252
StuI	AGGCCT	1 cut(s)	973
StyD4I	CCNGG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	4 cut(s)	129, 713, 826, 843
TaiI	ACGT	1 cut(s)	401
TasI	AATT	8 cut(s)	101, 132, 151, 292, 310, 481, 873, 886
TatI	WGTACW	3 cut(s)	274, 689, 786
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	4 cut(s)	131, 290, 374, 615
Tru9I	TTAA	4 cut(s)	131, 290, 374, 615
TscAI	CASTG	3 cut(s)	249, 804, 829
TseFI	GTSAC	2 cut(s)	66, 932
TseI	GCWGC	4 cut(s)	263, 592, 634, 980
Tsp45I	GTSAC	2 cut(s)	66, 932
TspDTI	ATGAA	1 cut(s)	494
TspGWI	ACGGA	1 cut(s)	755
TspRI	CASTG	3 cut(s)	249, 804, 829
XapI	RAATTY	6 cut(s)	101, 151, 292, 481, 873, 886
XceI	RCATGY	2 cut(s)	179, 705
XmiI	GTMKAC	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	481
XspI	CTAG	1 cut(s)	252
ZrmI	AGTACT	2 cut(s)	276, 691
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.