Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002042

Physical Location & Seq

Genomic Coordinates Reverse (-)

14350128 .. 14357022

Gene Structure 6895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1174200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGTCTGTCCACTTGGAAATGGGAGGATGGCCGTCATGGCAAGGCTTCTGGCGGGCGTGAATGTCTCACAGAGCATAACAGAAGGAGTTGGCCATCACAAGTTTGCTGCTCAAATAATCTGCAGAGAATTAAGTGAGGCAAATGAAGCTAATTTACTTGATGAAGAAGATATGCATGTGTTTGGTTTGAAGCCGATGGATGATCCTCTACATTTGGTATGTTGCAATGCTTGTAAAAAACCGGTCAAGGCCAGTCAGTATGCAGCTCATGCAGAACTTTGCAGGTTATTAAATTCTACGCAGGAAACTACTTTGGAGCTTGATGGAAGTATGGGGCAAAGGAAGCCTCCAAGGAAGGAGAGGAAAAAGTCATCAACTGCTCATGCTAACCAGTCCGCTTTAGTTGGAGAGCTAGAACGATCTGAATCTGTAGATGCAGACGATAACTCTGTGTCACAATTCCAGTTGGATGGGCAAATTGGAATGAATCCTGGCTCTTTTATGGAGGCAAAAATGAATTCAGCTTATGCGGACGCAACGTACATGATGGATGGTTCTGGAGTTAGTCCAGGAAATACCAATGGCTCAACATCTGTGACCCTTCCACCGACAAAACGATTTAAAATGATACCAGGTCATCAGCTGCCACTATCAGATGATATAGGAACAGCATCTGCTGTATCAAAACTTGCAAGTACTGAGGATGCATATCCTTATAGGGATTCTCCAAAAGGAGCCATTTCTGCTCTTAAATATAAGAAGTCCGGGCAAGCCCTTGACTGCTGCCTGCCAATTAAAGATTGTCCTCTTCCCCTGGCTACTAAAGTATATTACTCTCAAAGAGGCAATCGGCTCCGATCAGATCTTAGTCATCTATACCATGAGGCAATGGCATCAACTGAGGAGCTTTGTGGTGACATGAGAGACTCACAACCTTTGCCTTCTTTGCGGAAACCTGACCAAATTCTCGCACAAAATTCAGAAGTTTGTTTGGAGAACTCAATAGGTTGCCTGCCTGATGGTGATTTCTCAAATCAGTTTCCTGTGGATAATGTTCCAAGGCCTCAGGTGGCTGGCGTTGGTTTAGCAAGAAGCAAAATTCTTTCAAAACCTTATTCTTTTGCGGGTAACTCAGGACAATCATTGGGGACCATGCAACAGAAAACTGGCAGCGTTCCCGTTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sgf11

Protein Analysis

396

Amino Acids

42.51

Weight (kDa)

6.16

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002042)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160 FvH4_4g17160
malus_domestica	MD13G1174200.v1.1 MD16G1175500.v1.1 MD16G1175700.v1.1
prunus_persica	Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1 Prupe.1G142600_v2.0.a1
pyrus_communis	pycom13g14980 pycom16g14720
rosa_chinensis	RchiOBHm_Chr4g0420931
rosa_laevigata	RLG00000007719
rosa_multiflora	Rmu_sc0002006.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363310
rosa_rugosa	Rorug04G0167100 Rorug04G0167200
rosa_samantha	Rh4AG228400 Rh4BG231600 Rh4CG243300 Rh4DG227000
rosa_wichuraiana	Rw4G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	273
AciI	CCGC	5 cut(s)	53, 396, 530, 949, 1124
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	2 cut(s)	30, 91
AcsI	RAATTY	5 cut(s)	292, 517, 963, 976, 1098
AfaI	GTAC	2 cut(s)	542, 697
AgeI	ACCGGT	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	190, 1107
AjnI	CCWGG	4 cut(s)	490, 568, 631, 813
AluBI	AGCT	7 cut(s)	149, 266, 319, 412, 524, 643, 907
AluI	AGCT	7 cut(s)	149, 266, 319, 412, 524, 643, 907
Alw26I	GTCTC	2 cut(s)	70, 918
AlwI	GGATC	1 cut(s)	197
AlwNI	CAGNNNCTG	1 cut(s)	674
AoxI	GGCC	4 cut(s)	30, 91, 249, 1061
ApeKI	GCWGC	5 cut(s)	107, 263, 643, 783, 1170
ApoI	RAATTY	5 cut(s)	292, 517, 963, 976, 1098
AsiGI	ACCGGT	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	1149
AsuC2I	CCSGG	1 cut(s)	766
AsuHPI	GGTGA	2 cut(s)	926, 1034
AvaII	GGWCC	1 cut(s)	1149
AxyI	CCTNAGG	1 cut(s)	1065
BalI	TGGCCA	1 cut(s)	93
BarI	GAAGNNNNNNTAC	2 cut(s)	138, 170
BbvI	GCAGC	5 cut(s)	94, 275, 630, 770, 1182
BccI	CCATC	8 cut(s)	22, 102, 190, 317, 464, 541, 545, 1013
BceAI	ACGGC	1 cut(s)	17
BciT130I	CCWGG	4 cut(s)	492, 570, 633, 815
BcnI	CCSGG	1 cut(s)	766
BcoDI	GTCTC	2 cut(s)	70, 918
BfaI	CTAG	1 cut(s)	413
BfmI	CTRYAG	2 cut(s)	121, 429
BfuAI	ACCTGC	1 cut(s)	273
BglI	GCCNNNNNGGC	1 cut(s)	38
BglII	AGATCT	1 cut(s)	862
BisI	GCNGC	5 cut(s)	108, 264, 644, 784, 1171
BlsI	GCNGC	5 cut(s)	109, 265, 645, 785, 1172
BmcAI	AGTACT	1 cut(s)	697
Bme1390I	CCNGG	5 cut(s)	492, 570, 633, 766, 815
Bme18I	GGWCC	1 cut(s)	1149
BmgT120I	GGNCC	1 cut(s)	1149
BmiI	GGNNCC	3 cut(s)	736, 854, 1150
BmrFI	CCNGG	5 cut(s)	492, 570, 633, 766, 815
BmsI	GCATC	4 cut(s)	424, 680, 694, 902
BpmI	CTGGAG	1 cut(s)	579
BpuMI	CCSGG	1 cut(s)	766
BsaBI	GATNNNNATC	2 cut(s)	424, 708
BsaJI	CCNNGG	3 cut(s)	350, 813, 1058
BsaWI	WCCGGW	1 cut(s)	241
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	4 cut(s)	252, 391, 463, 1171
Bse21I	CCTNAGG	1 cut(s)	1065
Bse3DI	GCAATG	2 cut(s)	232, 894
Bse8I	GATNNNNATC	2 cut(s)	424, 708
BseBI	CCWGG	4 cut(s)	492, 570, 633, 815
BseDI	CCNNGG	3 cut(s)	350, 813, 1058
BseGI	GGATG	5 cut(s)	33, 205, 475, 556, 709
BseJI	GATNNNNATC	2 cut(s)	424, 708
BseMI	GCAATG	2 cut(s)	232, 894
BseMII	CTCAG	4 cut(s)	690, 891, 1079, 1146
BseNI	ACTGG	4 cut(s)	252, 391, 463, 1171
BseRI	GAGGAG	1 cut(s)	917
BseXI	GCAGC	5 cut(s)	94, 275, 630, 770, 1182
BshFI	GGCC	4 cut(s)	32, 93, 251, 1063
BshTI	ACCGGT	1 cut(s)	241
BsiSI	CCGG	2 cut(s)	242, 765
BslFI	GGGAC	1 cut(s)	1162
BsmAI	GTCTC	2 cut(s)	70, 918
BsmFI	GGGAC	1 cut(s)	1162
BsnI	GGCC	4 cut(s)	32, 93, 251, 1063
Bsp143I	GATC	4 cut(s)	202, 419, 857, 862
BspACI	CCGC	5 cut(s)	53, 396, 530, 949, 1124
BspANI	GGCC	4 cut(s)	32, 93, 251, 1063
BspCNI	CTCAG	4 cut(s)	691, 892, 1078, 1145
BspLI	GGNNCC	3 cut(s)	736, 854, 1150
BspMAI	CTGCAG	1 cut(s)	125
BspMI	ACCTGC	1 cut(s)	273
BspPI	GGATC	1 cut(s)	197
BsrDI	GCAATG	2 cut(s)	232, 894
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	4 cut(s)	252, 391, 463, 1171
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	3 cut(s)	350, 813, 1058
BssMI	GATC	4 cut(s)	202, 419, 857, 862
BssT1I	CCWWGG	2 cut(s)	350, 1058
Bst2UI	CCWGG	4 cut(s)	492, 570, 633, 815
Bst6I	CTCTTC	1 cut(s)	813
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	5 cut(s)	55, 771, 788, 1013, 1075
BstDEI	CTNAG	5 cut(s)	699, 866, 900, 1065, 1132
BstF5I	GGATG	5 cut(s)	33, 205, 475, 556, 709
BstKTI	GATC	4 cut(s)	205, 422, 860, 865
BstMAI	GTCTC	2 cut(s)	70, 918
BstMBI	GATC	4 cut(s)	202, 419, 857, 862
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 146, 269, 343, 743, 946
BstNI	CCWGG	4 cut(s)	492, 570, 633, 815
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	5 cut(s)	490, 568, 631, 764, 813
BstSFI	CTRYAG	2 cut(s)	121, 429
BstV1I	GCAGC	5 cut(s)	94, 275, 630, 770, 1182
BstX2I	RGATCY	1 cut(s)	862
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	862
Bsu36I	CCTNAGG	1 cut(s)	1065
BsuRI	GGCC	4 cut(s)	32, 93, 251, 1063
BtsCI	GGATG	5 cut(s)	33, 205, 475, 556, 709
BveI	ACCTGC	1 cut(s)	273
Cac8I	GCNNGC	5 cut(s)	55, 771, 788, 1013, 1075
CaiI	CAGNNNCTG	1 cut(s)	674
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	1149
CseI	GACGC	1 cut(s)	542
CsiI	ACCWGGT	1 cut(s)	631
Csp6I	GTAC	2 cut(s)	541, 696
CspAI	ACCGGT	1 cut(s)	241
CviAII	CATG	8 cut(s)	37, 176, 269, 383, 544, 881, 919, 1153
CviQI	GTAC	2 cut(s)	541, 696
DdeI	CTNAG	5 cut(s)	699, 866, 900, 1065, 1132
DpnI	GATC	4 cut(s)	204, 421, 859, 864
DpnII	GATC	4 cut(s)	202, 419, 857, 862
DraI	TTTAAA	1 cut(s)	622
EaeI	YGGCCR	2 cut(s)	30, 91
Eam1104I	CTCTTC	1 cut(s)	813
EarI	CTCTTC	1 cut(s)	813
Eco130I	CCWWGG	2 cut(s)	350, 1058
Eco147I	AGGCCT	1 cut(s)	1063
Eco47I	GGWCC	1 cut(s)	1149
Eco81I	CCTNAGG	1 cut(s)	1065
EcoRI	GAATTC	1 cut(s)	517
EcoRII	CCWGG	4 cut(s)	490, 568, 631, 813
EcoT14I	CCWWGG	2 cut(s)	350, 1058
EcoT22I	ATGCAT	2 cut(s)	177, 709
ErhI	CCWWGG	2 cut(s)	350, 1058
FaeI	CATG	8 cut(s)	40, 179, 272, 386, 547, 884, 922, 1156
FaqI	GGGAC	1 cut(s)	1162
FatI	CATG	8 cut(s)	36, 175, 268, 382, 543, 880, 918, 1152
FauI	CCCGC	2 cut(s)	46, 1117
Fnu4HI	GCNGC	5 cut(s)	108, 264, 644, 784, 1171
FokI	GGATG	5 cut(s)	40, 212, 482, 563, 716
Fsp4HI	GCNGC	5 cut(s)	108, 264, 644, 784, 1171
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	5 cut(s)	108, 264, 644, 784, 1171
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	4 cut(s)	32, 93, 251, 1063
HapII	CCGG	2 cut(s)	242, 765
HgaI	GACGC	1 cut(s)	542
Hin1II	CATG	8 cut(s)	40, 179, 272, 386, 547, 884, 922, 1156
HinfI	GANTC	4 cut(s)	425, 487, 722, 926
HpaII	CCGG	2 cut(s)	242, 765
HphI	GGTGA	2 cut(s)	926, 1034
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	5 cut(s)	424, 655, 857, 862, 982
Hpy188III	TCNNGA	2 cut(s)	558, 1134
Hpy8I	GTNNAC	1 cut(s)	11
HpyAV	CCTTC	4 cut(s)	77, 349, 611, 951
HpyCH4IV	ACGT	1 cut(s)	539
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 146, 269, 343, 743, 946
HpyF3I	CTNAG	5 cut(s)	699, 866, 900, 1065, 1132
HpySE526I	ACGT	1 cut(s)	539
Hsp92II	CATG	8 cut(s)	40, 179, 272, 386, 547, 884, 922, 1156
Kzo9I	GATC	4 cut(s)	202, 419, 857, 862
LmnI	GCTCC	4 cut(s)	316, 734, 858, 904
Lsp1109I	GCAGC	5 cut(s)	94, 275, 630, 770, 1182
LweI	GCATC	4 cut(s)	424, 680, 694, 902
MabI	ACCWGGT	1 cut(s)	631
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	4 cut(s)	453, 595, 914, 1127
MalI	GATC	4 cut(s)	204, 421, 859, 864
MboI	GATC	4 cut(s)	202, 419, 857, 862
MboII	GAAGA	3 cut(s)	176, 179, 800
MflI	RGATCY	1 cut(s)	862
MlsI	TGGCCA	1 cut(s)	93
MluNI	TGGCCA	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	920
MmeI	TCCRAC	2 cut(s)	385, 447
Mox20I	TGGCCA	1 cut(s)	93
Mph1103I	ATGCAT	2 cut(s)	177, 709
MscI	TGGCCA	1 cut(s)	93
MseI	TTAA	5 cut(s)	131, 290, 621, 750, 795
Msp20I	TGGCCA	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	643
MspI	CCGG	2 cut(s)	242, 765
MspR9I	CCNGG	5 cut(s)	492, 570, 633, 766, 815
MvaI	CCWGG	4 cut(s)	492, 570, 633, 815
MwoI	GCNNNNNNNGC	6 cut(s)	38, 146, 269, 343, 743, 946
NciI	CCSGG	1 cut(s)	766
NdeII	GATC	4 cut(s)	202, 419, 857, 862
NlaIII	CATG	8 cut(s)	40, 179, 272, 386, 547, 884, 922, 1156
NlaIV	GGNNCC	3 cut(s)	736, 854, 1150
NmuCI	GTSAC	3 cut(s)	453, 595, 914
NsiI	ATGCAT	2 cut(s)	177, 709
NspI	RCATGY	1 cut(s)	179
PceI	AGGCCT	1 cut(s)	1063
PfeI	GAWTC	3 cut(s)	425, 487, 722
PfoI	TCCNGGA	1 cut(s)	568
PinAI	ACCGGT	1 cut(s)	241
PkrI	GCNGC	5 cut(s)	109, 265, 645, 785, 1172
PleI	GAGTC	1 cut(s)	920
PpsI	GAGTC	1 cut(s)	920
Psp6I	CCWGG	4 cut(s)	490, 568, 631, 813
PspGI	CCWGG	4 cut(s)	490, 568, 631, 813
PspN4I	GGNNCC	3 cut(s)	736, 854, 1150
PspPI	GGNCC	1 cut(s)	1149
PstI	CTGCAG	1 cut(s)	125
PstNI	CAGNNNCTG	1 cut(s)	674
PsuI	RGATCY	1 cut(s)	862
PvuII	CAGCTG	1 cut(s)	643
RsaI	GTAC	2 cut(s)	542, 697
RsaNI	GTAC	2 cut(s)	541, 696
SaqAI	TTAA	5 cut(s)	131, 290, 621, 750, 795
SatI	GCNGC	5 cut(s)	108, 264, 644, 784, 1171
Sau3AI	GATC	4 cut(s)	202, 419, 857, 862
Sau96I	GGNCC	1 cut(s)	1149
ScaI	AGTACT	1 cut(s)	697
SchI	GAGTC	1 cut(s)	920
ScrFI	CCNGG	5 cut(s)	492, 570, 633, 766, 815
SexAI	ACCWGGT	1 cut(s)	631
SfaNI	GCATC	4 cut(s)	424, 680, 694, 902
SfcI	CTRYAG	2 cut(s)	121, 429
SinI	GGWCC	1 cut(s)	1149
SseBI	AGGCCT	1 cut(s)	1063
SsiI	CCGC	5 cut(s)	53, 396, 530, 949, 1124
SspMI	CTAG	1 cut(s)	413
StuI	AGGCCT	1 cut(s)	1063
StyD4I	CCNGG	5 cut(s)	490, 568, 631, 764, 813
StyI	CCWWGG	2 cut(s)	350, 1058
TaiI	ACGT	1 cut(s)	542
TatI	WGTACW	1 cut(s)	695
TfiI	GAWTC	3 cut(s)	425, 487, 722
Tru1I	TTAA	5 cut(s)	131, 290, 621, 750, 795
Tru9I	TTAA	5 cut(s)	131, 290, 621, 750, 795
TseFI	GTSAC	3 cut(s)	453, 595, 914
TseI	GCWGC	5 cut(s)	107, 263, 643, 783, 1170
Tsp45I	GTSAC	3 cut(s)	453, 595, 914
TspDTI	ATGAA	4 cut(s)	159, 177, 500, 530
VpaK11BI	GGWCC	1 cut(s)	1149
XapI	RAATTY	5 cut(s)	292, 517, 963, 976, 1098
XceI	RCATGY	1 cut(s)	179
XspI	CTAG	1 cut(s)	413
ZrmI	AGTACT	1 cut(s)	697
Zsp2I	ATGCAT	2 cut(s)	177, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.