Rh4CG243300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002042
Physical Location & Seq
Forward (+)
49018768 .. 49025188
6421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG243300.1

Sequence Viewer

Length: 1098 bp
ATGGTTTGCTCGGTTGGAAGTGGGAGGATGGCGGTCATGGCAAGGGTTCTTGCAGGTGGGAGTGTGTCACATAGCCTTGCAGATGAAGCTCCTCATCAGAAATTCGCGGCTCATTTGATTTGTAGACAGTTAATTGAGGCAAATGATGCAAATTTGCTTGACGAAGAAGATATGCATGTGTTTGATTTGGAGCCGATGGCTGATACTTTGCTCTTGGTTTGTTGCAATGCTTGTAAAAAACCAGTGAAGGCTAGCCAATATGCAGCCCATTCAGTACTTTGCAGGTCATTAAATTCTACGCAGGAAACTAATTTGGAGCTTGATGGAAGTATTGGGCAAAGGAAGCCTCCAAGGAAGGAGAAGAAAAAGTTATTAACTGCATATGCCCACCAGTCAACGTCAGTTAGAGAGCTACAAAGGTCTGAATCTGCAGATGATATTGCTGTGTCTCAGCCTCAGTTGGATGGGAAAATAGGAATGAATTCTTCTTGTGGTATGGGCGCAAAGGGGAACTCAGCATCTGTAGAAACAACCTATATGATGGATGGTTCAGGAGTTACCCCTGAAAATACCAGTTACTCAACAAGTCTGCTGCATCCTCCAACAAAACGATTTAAAATGATAGCAAGTGAGCAGCCACCACTATCAGATGATCTGGGAACAACATCTATTGTATCAGAACTCAAAAGTACTCAGGAAGCATGTCCATACTGTCCTGTTCCCCTTGCTACTAAAGTATATTACTCACAAAGAAGTAATCGGCTCCGTACAGCACTTTGTCATCTGTACTCTGAGGCAGTGGCATCAAATAAGGAGCTTTGCACTGTCATGAGGGACGAACAGTCTTTGCCTTCTATACGAACACCAGATCAAATTCTCGCACAAAATTCAGAAGCTTGCTTGGAGAAATCAATAGGCTCTCTTCCTGCTGGTGACCTATCAAACCAGTTTCCCATTGATAATGTTCCGAGGCCTCAGGCTGCAGGTGGTGGTTTGACAAGAAGCAAACTTCTTTCAAAACCTTATTCTTTTGCGGGTAGCTCAGGACAATCGCTGGGAACCATGCAACAGCGAAATGGCAGAGTTCCTGTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sgf11

Protein Analysis

365

Amino Acids

39.27

Weight (kDa)

7.05

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 44, 974
Acc36I ACCTGC 3 cut(s) 44, 273, 974
AccI GTMKAC 1 cut(s) 124
AccII CGCG 1 cut(s) 107
AciI CCGC 3 cut(s) 32, 107, 1034
AcsI RAATTY 6 cut(s) 101, 151, 292, 481, 873, 886
AfaI GTAC 4 cut(s) 276, 691, 769, 788
AgsI TTSAA 1 cut(s) 1017
AhdI GACNNNNNGTC 1 cut(s) 841
AluBI AGCT 6 cut(s) 89, 319, 412, 817, 896, 1041
AluI AGCT 6 cut(s) 89, 319, 412, 817, 896, 1041
Alw26I GTCTC 1 cut(s) 453
AlwNI CAGNNNCTG 1 cut(s) 521
AoxI GGCC 1 cut(s) 971
ApeKI GCWGC 4 cut(s) 263, 592, 634, 980
ApoI RAATTY 6 cut(s) 101, 151, 292, 481, 873, 886
Asp700I GAANNNNTTC 1 cut(s) 481
AspLEI GCGC 1 cut(s) 503
AsuHPI GGTGA 1 cut(s) 944
AsuNHI GCTAGC 1 cut(s) 251
AxyI CCTNAGG 1 cut(s) 975
BbvI GCAGC 4 cut(s) 275, 579, 646, 967
BccI CCATC 6 cut(s) 22, 190, 317, 458, 535, 539
BcoDI GTCTC 1 cut(s) 453
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 3 cut(s) 429, 522, 981
BfuAI ACCTGC 3 cut(s) 44, 273, 974
BisI GCNGC 5 cut(s) 108, 264, 593, 635, 981
BlsI GCNGC 5 cut(s) 109, 265, 594, 636, 982
BmcAI AGTACT 2 cut(s) 276, 691
BmeRI GACNNNNNGTC 1 cut(s) 841
BmiI GGNNCC 3 cut(s) 192, 764, 1060
BmsI GCATC 4 cut(s) 136, 527, 604, 812
BmtI GCTAGC 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 1042
BsaJI CCNNGG 2 cut(s) 350, 968
Bse1I ACTGG 4 cut(s) 242, 391, 573, 946
Bse21I CCTNAGG 1 cut(s) 975
Bse3DI GCAATG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 350, 968
BseGI GGATG 4 cut(s) 33, 469, 550, 595
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 7 cut(s) 464, 470, 528, 707, 783, 989, 1056
BseNI ACTGG 4 cut(s) 242, 391, 573, 946
BseRI GAGGAG 1 cut(s) 81
BseXI GCAGC 4 cut(s) 275, 579, 646, 967
BseYI CCCAGC 1 cut(s) 1054
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 1 cut(s) 973
BslFI GGGAC 1 cut(s) 848
BsmAI GTCTC 1 cut(s) 453
BsmFI GGGAC 1 cut(s) 848
BsnI GGCC 1 cut(s) 973
Bsp143I GATC 2 cut(s) 652, 868
BspACI CCGC 3 cut(s) 32, 107, 1034
BspANI GGCC 1 cut(s) 973
BspCNI CTCAG 7 cut(s) 463, 469, 527, 706, 784, 988, 1055
BspFNI CGCG 1 cut(s) 107
BspHI TCATGA 1 cut(s) 828
BspLI GGNNCC 3 cut(s) 192, 764, 1060
BspMAI CTGCAG 2 cut(s) 433, 985
BspMI ACCTGC 3 cut(s) 44, 273, 974
BspOI GCTAGC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 232
BsrI ACTGG 4 cut(s) 242, 391, 573, 946
BssECI CCNNGG 2 cut(s) 350, 968
BssMI GATC 2 cut(s) 652, 868
BssT1I CCWWGG 1 cut(s) 350
Bst4CI ACNGT 4 cut(s) 129, 713, 826, 843
Bst6I CTCTTC 1 cut(s) 927
BstAPI GCANNNNNTGC 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 253, 898
BstDEI CTNAG 7 cut(s) 450, 456, 514, 693, 792, 975, 1042
BstEII GGTNACC 1 cut(s) 932
BstF5I GGATG 4 cut(s) 33, 469, 550, 595
BstFNI CGCG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 503
BstKTI GATC 2 cut(s) 655, 871
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 2 cut(s) 652, 868
BstMWI GCNNNNNNNGC 4 cut(s) 38, 86, 146, 343
BstNSI RCATGY 2 cut(s) 179, 705
BstPI GGTNACC 1 cut(s) 932
BstSFI CTRYAG 3 cut(s) 429, 522, 981
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 4 cut(s) 275, 579, 646, 967
Bsu36I CCTNAGG 1 cut(s) 975
BsuRI GGCC 1 cut(s) 973
BtsCI GGATG 4 cut(s) 33, 469, 550, 595
BtsI GCAGTG 1 cut(s) 804
BtsIMutI CAGTG 3 cut(s) 249, 804, 822
BveI ACCTGC 3 cut(s) 44, 273, 974
Cac8I GCNNGC 2 cut(s) 253, 898
CaiI CAGNNNCTG 1 cut(s) 521
CciI TCATGA 1 cut(s) 828
CfoI GCGC 1 cut(s) 503
Csp6I GTAC 4 cut(s) 275, 690, 768, 787
CviAII CATG 5 cut(s) 37, 176, 702, 829, 1063
CviQI GTAC 4 cut(s) 275, 690, 768, 787
DdeI CTNAG 7 cut(s) 450, 456, 514, 693, 792, 975, 1042
DpnI GATC 2 cut(s) 654, 870
DpnII GATC 2 cut(s) 652, 868
DraI TTTAAA 1 cut(s) 616
DriI GACNNNNNGTC 1 cut(s) 841
Eam1104I CTCTTC 1 cut(s) 927
Eam1105I GACNNNNNGTC 1 cut(s) 841
EarI CTCTTC 1 cut(s) 927
Eco130I CCWWGG 1 cut(s) 350
Eco147I AGGCCT 1 cut(s) 973
Eco81I CCTNAGG 1 cut(s) 975
Eco91I GGTNACC 1 cut(s) 932
EcoO65I GGTNACC 1 cut(s) 932
EcoRI GAATTC 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 350
EcoT22I ATGCAT 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 5 cut(s) 40, 179, 705, 832, 1066
FaqI GGGAC 1 cut(s) 848
FatI CATG 5 cut(s) 36, 175, 701, 828, 1062
FauI CCCGC 1 cut(s) 1027
FauNDI CATATG 1 cut(s) 382
FblI GTMKAC 1 cut(s) 124
Fnu4HI GCNGC 5 cut(s) 108, 264, 593, 635, 981
FokI GGATG 4 cut(s) 40, 476, 557, 582
Fsp4HI GCNGC 5 cut(s) 108, 264, 593, 635, 981
FspBI CTAG 1 cut(s) 252
GlaI GCGC 1 cut(s) 502
GluI GCNGC 5 cut(s) 108, 264, 593, 635, 981
GsaI CCCAGC 1 cut(s) 1058
HaeIII GGCC 1 cut(s) 973
HhaI GCGC 1 cut(s) 503
Hin1II CATG 5 cut(s) 40, 179, 705, 832, 1066
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HindIII AAGCTT 1 cut(s) 894
HinfI GANTC 1 cut(s) 425
HphI GGTGA 1 cut(s) 944
Hpy166II GTNNAC 2 cut(s) 125, 396
Hpy188I TCNGA 7 cut(s) 99, 424, 649, 679, 793, 892, 969
Hpy188III TCNNGA 4 cut(s) 552, 695, 829, 1044
Hpy8I GTNNAC 2 cut(s) 125, 396
HpyAV CCTTC 3 cut(s) 241, 349, 861
HpyCH4III ACNGT 4 cut(s) 129, 713, 826, 843
HpyCH4IV ACGT 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 86, 146, 343
HpyF3I CTNAG 7 cut(s) 450, 456, 514, 693, 792, 975, 1042
HpySE526I ACGT 1 cut(s) 398
Hsp92II CATG 5 cut(s) 40, 179, 705, 832, 1066
HspAI GCGC 1 cut(s) 501
Kzo9I GATC 2 cut(s) 652, 868
LmnI GCTCC 5 cut(s) 94, 190, 316, 768, 814
Lsp1109I GCAGC 4 cut(s) 275, 579, 646, 967
LweI GCATC 4 cut(s) 136, 527, 604, 812
MaeI CTAG 1 cut(s) 252
MaeII ACGT 1 cut(s) 398
MaeIII GTNAC 4 cut(s) 66, 556, 575, 932
MalI GATC 2 cut(s) 654, 870
MboI GATC 2 cut(s) 652, 868
MboII GAAGA 5 cut(s) 176, 179, 373, 477, 914
MluCI AATT 8 cut(s) 101, 132, 151, 292, 310, 481, 873, 886
MmeI TCCRAC 2 cut(s) 441, 626
Mph1103I ATGCAT 1 cut(s) 177
MroXI GAANNNNTTC 1 cut(s) 481
MseI TTAA 4 cut(s) 131, 290, 374, 615
MslI CAYNNNNRTG 1 cut(s) 827
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 4 cut(s) 38, 86, 146, 343
NdeI CATATG 1 cut(s) 382
NdeII GATC 2 cut(s) 652, 868
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 5 cut(s) 40, 179, 705, 832, 1066
NlaIV GGNNCC 3 cut(s) 192, 764, 1060
NmuCI GTSAC 2 cut(s) 66, 932
NsiI ATGCAT 1 cut(s) 177
NspI RCATGY 2 cut(s) 179, 705
PagI TCATGA 1 cut(s) 828
PaqCI CACCTGC 2 cut(s) 44, 974
PceI AGGCCT 1 cut(s) 973
PdmI GAANNNNTTC 1 cut(s) 481
PfeI GAWTC 1 cut(s) 425
PkrI GCNGC 5 cut(s) 109, 265, 594, 636, 982
PspEI GGTNACC 1 cut(s) 932
PspFI CCCAGC 1 cut(s) 1054
PspN4I GGNNCC 3 cut(s) 192, 764, 1060
PstI CTGCAG 2 cut(s) 433, 985
PstNI CAGNNNCTG 1 cut(s) 521
RsaI GTAC 4 cut(s) 276, 691, 769, 788
RsaNI GTAC 4 cut(s) 275, 690, 768, 787
RseI CAYNNNNRTG 1 cut(s) 827
SaqAI TTAA 4 cut(s) 131, 290, 374, 615
SatI GCNGC 5 cut(s) 108, 264, 593, 635, 981
Sau3AI GATC 2 cut(s) 652, 868
ScaI AGTACT 2 cut(s) 276, 691
SfaNI GCATC 4 cut(s) 136, 527, 604, 812
SfcI CTRYAG 3 cut(s) 429, 522, 981
SmiMI CAYNNNNRTG 1 cut(s) 827
Sse9I AATT 8 cut(s) 101, 132, 151, 292, 310, 481, 873, 886
SseBI AGGCCT 1 cut(s) 973
SsiI CCGC 3 cut(s) 32, 107, 1034
SspMI CTAG 1 cut(s) 252
StuI AGGCCT 1 cut(s) 973
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 4 cut(s) 129, 713, 826, 843
TaiI ACGT 1 cut(s) 401
TasI AATT 8 cut(s) 101, 132, 151, 292, 310, 481, 873, 886
TatI WGTACW 3 cut(s) 274, 689, 786
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 4 cut(s) 131, 290, 374, 615
Tru9I TTAA 4 cut(s) 131, 290, 374, 615
TscAI CASTG 3 cut(s) 249, 804, 829
TseFI GTSAC 2 cut(s) 66, 932
TseI GCWGC 4 cut(s) 263, 592, 634, 980
Tsp45I GTSAC 2 cut(s) 66, 932
TspDTI ATGAA 2 cut(s) 99, 494
TspGWI ACGGA 1 cut(s) 755
TspRI CASTG 3 cut(s) 249, 804, 829
XapI RAATTY 6 cut(s) 101, 151, 292, 481, 873, 886
XceI RCATGY 2 cut(s) 179, 705
XmiI GTMKAC 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 481
XspI CTAG 1 cut(s) 252
ZrmI AGTACT 2 cut(s) 276, 691
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.