Rmu_sc0002006.1_g000002

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002006.1
Physical Location & Seq
Reverse (-)
6842 .. 15236
8395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002006.1_g000002.1.cds

Sequence Viewer

Length: 1785 bp
atgctcaatctgcacaaagaccacaacgccgacccactcagcctctatttgccaaacgctaaacgtcgatccccaacacaccttagaaacgtgtcggcgccccacggattagcgacgagatgccgcactgctactagaccgatagattgtcgccgccgctctctcgtctcaactctagggttgcttgcttacatgggtatctcaattaatccacccgtgttaacagccgcttcggtgctccacggacattgctccgagctctgcgattctcgcttgatttggatgctccggcttcgtcgcgggtttggtaattcgggagcggacttaggatttgtgcatggactagttcggcggcactggaagttggtaccgttgagtggtgcaacaagtctcgatggtttgctcggttggaagtgggaggatggcgatgaagctccccatcagaaatttgcggctcatttgatttgtagacagttaattgaggcaaatgatgcaaatttgcttgacgaagaagatatgcatgtgtttgatttggagccgatggctgatactttgctcttggtaagcacaaaatctcttaagttgttgcttctttctctatatgataatttgtcttcttcaatgttgaatggtttatctatctcgatggtttgctcggttggaagtgggaggatggcggtgatggcaagggttcttgcaggggggagtgtgtcacatagccttgcaggtacagtgacaatttccgaggcatcttgggaggcatgtagtgttgtgcattgtgtcgatgaagctccccatcagaaatttgcggctcatttgatttgtagacagttaattgaggcaaatgatgcaaatttgcttgacgaagaagatatgcatgtgtttgatttggagccgatggctgatactttgctcttggttagttgcaatgcttgtaaaaaaccagtgaaggctagccaatatgcagcccattcagtactttgcaggtcattaaattctacgcaggaaactaatttggagcttgatggaagtattgggcaaaggaagcctccaaggaaggagaagaaaaagttattaactgcatatgctcaccagtcaacgtcagttagagagctacaaaggtctgaatctgcagatgatattgctgtgtctcagcctcagttggatgggaaaataggaatgaattcttcttgtgggaactcagcatctgtagaaacaacctatatgatggatggttcaggagttacccctgaaaataccagttactcaacaagtctgctgcatcctccaacaaaacgatttaaaatgatagcaagtgagcagccaccactatcagatgatctgggaacaacatctattgtatcagaactcaaaagtactcaggaagcatgtccatactgtcctgttccccttgctactaaagtatattactcgcaaagaagtaatcggctccgtacagcactttgtcatctctactctgaggcagtggcatcaaataaggagctttgcactgtcatgagggacgaacagtctttgccttctatacgaacacctgatcaaattctcgcacaaaattcagaagcttgcttggagaaatcaataggctcccttcctgctggtgacctatcaaaccagtttcccattgataatgttccgaggcctcaggctgcaggtgttggtttgacaagaaccaaacttctttcaaaaccttattcttttgcaggtagctcaggacaatcgctgggaaccatgcaacagcgaaatggcagagttcctgttgtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

594

Amino Acids

64.65

Weight (kDa)

7.03

Isoelectric Point (pI)

52.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1661
Acc36I ACCTGC 4 cut(s) 716, 975, 1661, 1712
Acc65I GGTACC 1 cut(s) 367
AccB1I GGYRCC 2 cut(s) 97, 367
AccBSI CCGCTC 2 cut(s) 159, 320
AccI GTMKAC 2 cut(s) 469, 826
AccII CGCG 1 cut(s) 300
AclWI GGATC 1 cut(s) 63
AcsI RAATTY 8 cut(s) 446, 496, 803, 853, 994, 1183, 1560, 1573
AcyI GRCGYC 1 cut(s) 98
AfaI GTAC 5 cut(s) 369, 730, 978, 1378, 1456
AfiI CCNNNNNNNGG 1 cut(s) 377
AflII CTTAAG 1 cut(s) 578
AflIII ACRYGT 1 cut(s) 90
AgsI TTSAA 3 cut(s) 621, 628, 1704
AhdI GACNNNNNGTC 1 cut(s) 1528
AhlI ACTAGT 1 cut(s) 343
AluBI AGCT 8 cut(s) 259, 434, 791, 1021, 1114, 1504, 1583, 1728
AluI AGCT 8 cut(s) 259, 434, 791, 1021, 1114, 1504, 1583, 1728
Alw21I GWGCWC 2 cut(s) 240, 261
Alw26I GTCTC 3 cut(s) 172, 395, 1155
AlwI GGATC 1 cut(s) 63
AlwNI CAGNNNCTG 1 cut(s) 1208
AoxI GGCC 1 cut(s) 1658
ApeKI GCWGC 4 cut(s) 965, 1279, 1321, 1667
ApoI RAATTY 8 cut(s) 446, 496, 803, 853, 994, 1183, 1560, 1573
ArsI GACNNNNNNTTYG 2 cut(s) 314, 346
AseI ATTAAT 1 cut(s) 207
Asp700I GAANNNNTTC 1 cut(s) 1183
Asp718I GGTACC 1 cut(s) 367
AspLEI GCGC 1 cut(s) 100
AsuHPI GGTGA 3 cut(s) 691, 1082, 1631
AsuNHI GCTAGC 1 cut(s) 953
AxyI CCTNAGG 1 cut(s) 1662
BaeI ACNNNNGTAYC 2 cut(s) 181, 214
BanI GGYRCC 2 cut(s) 97, 367
BanII GRGCYC 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 606
Bbv12I GWGCWC 2 cut(s) 240, 261
BbvI GCAGC 4 cut(s) 977, 1266, 1333, 1654
BclI TGATCA 1 cut(s) 1555
BcoDI GTCTC 3 cut(s) 172, 395, 1155
BcuI ACTAGT 1 cut(s) 343
BfaI CTAG 4 cut(s) 135, 176, 344, 954
BfmI CTRYAG 3 cut(s) 1131, 1209, 1668
BfoI RGCGCY 1 cut(s) 101
BfrI CTTAAG 1 cut(s) 578
BfuAI ACCTGC 4 cut(s) 716, 975, 1661, 1712
BmcAI AGTACT 2 cut(s) 978, 1378
BmeRI GACNNNNNGTC 1 cut(s) 1528
BmiI GGNNCC 7 cut(s) 99, 369, 537, 894, 1451, 1606, 1747
BmsI GCATC 8 cut(s) 110, 273, 481, 758, 838, 1214, 1291, 1499
BmtI GCTAGC 1 cut(s) 957
BpiI GAAGAC 1 cut(s) 606
Bpu10I CCTNAGC 1 cut(s) 1729
BsaHI GRCGYC 1 cut(s) 98
BsaJI CCNNGG 5 cut(s) 103, 241, 744, 1052, 1655
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse1I ACTGG 5 cut(s) 362, 944, 1093, 1260, 1633
Bse21I CCTNAGG 1 cut(s) 1662
Bse3DI GCAATG 2 cut(s) 247, 934
BseDI CCNNGG 5 cut(s) 103, 241, 744, 1052, 1655
BseGI GGATG 6 cut(s) 288, 427, 678, 1171, 1237, 1282
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMI GCAATG 2 cut(s) 247, 934
BseMII CTCAG 8 cut(s) 52, 1166, 1172, 1215, 1394, 1470, 1676, 1743
BseNI ACTGG 5 cut(s) 362, 944, 1093, 1260, 1633
BseXI GCAGC 4 cut(s) 977, 1266, 1333, 1654
BseYI CCCAGC 1 cut(s) 1741
Bsh1236I CGCG 1 cut(s) 300
BshFI GGCC 1 cut(s) 1660
BshNI GGYRCC 2 cut(s) 97, 367
BsiHKAI GWGCWC 2 cut(s) 240, 261
BsiSI CCGG 1 cut(s) 289
BslFI GGGAC 1 cut(s) 1535
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 3 cut(s) 172, 395, 1155
BsmBI CGTCTC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 1535
BsnI GGCC 1 cut(s) 1660
Bsp1286I GDGCHC 2 cut(s) 240, 261
Bsp143I GATC 3 cut(s) 68, 1339, 1555
BspANI GGCC 1 cut(s) 1660
BspCNI CTCAG 8 cut(s) 51, 1165, 1171, 1214, 1393, 1471, 1675, 1742
BspFNI CGCG 1 cut(s) 300
BspHI TCATGA 1 cut(s) 1515
BspLI GGNNCC 7 cut(s) 99, 369, 537, 894, 1451, 1606, 1747
BspMAI CTGCAG 2 cut(s) 1135, 1672
BspMI ACCTGC 4 cut(s) 716, 975, 1661, 1712
BspOI GCTAGC 1 cut(s) 957
BspPI GGATC 1 cut(s) 63
BspT107I GGYRCC 2 cut(s) 97, 367
BspTI CTTAAG 1 cut(s) 578
BsrBI CCGCTC 2 cut(s) 159, 320
BsrDI GCAATG 2 cut(s) 247, 934
BsrI ACTGG 5 cut(s) 362, 944, 1093, 1260, 1633
BssECI CCNNGG 5 cut(s) 103, 241, 744, 1052, 1655
BssMI GATC 3 cut(s) 68, 1339, 1555
BssNI GRCGYC 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 1052
Bst4CI ACNGT 7 cut(s) 372, 474, 733, 831, 1400, 1513, 1530
BstACI GRCGYC 1 cut(s) 98
BstAFI CTTAAG 1 cut(s) 578
BstAPI GCANNNNNTGC 2 cut(s) 491, 848
BstC8I GCNNGC 3 cut(s) 186, 955, 1585
BstDSI CCRYGG 2 cut(s) 103, 241
BstEII GGTNACC 1 cut(s) 1619
BstF5I GGATG 6 cut(s) 288, 427, 678, 1171, 1237, 1282
BstFNI CGCG 1 cut(s) 300
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 3 cut(s) 71, 1342, 1558
BstMAI GTCTC 3 cut(s) 172, 395, 1155
BstMBI GATC 3 cut(s) 68, 1339, 1555
BstMWI GCNNNNNNNGC 6 cut(s) 10, 270, 491, 683, 848, 1045
BstNSI RCATGY 4 cut(s) 524, 765, 881, 1392
BstPI GGTNACC 1 cut(s) 1619
BstSFI CTRYAG 3 cut(s) 1131, 1209, 1668
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 4 cut(s) 977, 1266, 1333, 1654
BstV2I GAAGAC 1 cut(s) 606
Bsu36I CCTNAGG 1 cut(s) 1662
BsuRI GGCC 1 cut(s) 1660
BtgI CCRYGG 2 cut(s) 103, 241
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 6 cut(s) 288, 427, 678, 1171, 1237, 1282
BtsI GCAGTG 2 cut(s) 126, 1491
BtsIMutI CAGTG 6 cut(s) 126, 355, 738, 951, 1491, 1509
BveI ACCTGC 4 cut(s) 716, 975, 1661, 1712
Cac8I GCNNGC 3 cut(s) 186, 955, 1585
CaiI CAGNNNCTG 1 cut(s) 1208
CciI TCATGA 1 cut(s) 1515
CfoI GCGC 1 cut(s) 100
Csp6I GTAC 5 cut(s) 368, 729, 977, 1377, 1455
CspCI CAANNNNNGTGG 2 cut(s) 230, 265
CviAII CATG 8 cut(s) 193, 338, 521, 762, 878, 1389, 1516, 1750
CviQI GTAC 5 cut(s) 368, 729, 977, 1377, 1455
DinI GGCGCC 1 cut(s) 99
DpnI GATC 3 cut(s) 70, 1341, 1557
DpnII GATC 3 cut(s) 68, 1339, 1555
DraI TTTAAA 1 cut(s) 1303
DriI GACNNNNNGTC 1 cut(s) 1528
Eam1105I GACNNNNNGTC 1 cut(s) 1528
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 1052
Eco147I AGGCCT 1 cut(s) 1660
Eco24I GRGCYC 1 cut(s) 261
Eco53kI GAGCTC 1 cut(s) 259
Eco81I CCTNAGG 1 cut(s) 1662
Eco91I GGTNACC 1 cut(s) 1619
EcoICRI GAGCTC 1 cut(s) 259
EcoO65I GGTNACC 1 cut(s) 1619
EcoRI GAATTC 1 cut(s) 1183
EcoT14I CCWWGG 1 cut(s) 1052
EcoT22I ATGCAT 2 cut(s) 522, 879
EcoT38I GRGCYC 1 cut(s) 261
EgeI GGCGCC 1 cut(s) 99
EheI GGCGCC 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 1052
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 8 cut(s) 196, 341, 524, 765, 881, 1392, 1519, 1753
FaqI GGGAC 1 cut(s) 1535
FatI CATG 8 cut(s) 192, 337, 520, 761, 877, 1388, 1515, 1749
FauI CCCGC 1 cut(s) 293
FauNDI CATATG 1 cut(s) 1084
FbaI TGATCA 1 cut(s) 1555
FblI GTMKAC 2 cut(s) 469, 826
FokI GGATG 6 cut(s) 295, 434, 685, 1178, 1244, 1269
FriOI GRGCYC 1 cut(s) 261
FspBI CTAG 4 cut(s) 135, 176, 344, 954
GlaI GCGC 1 cut(s) 99
GsaI CCCAGC 1 cut(s) 1745
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 1 cut(s) 1660
HapII CCGG 1 cut(s) 289
HhaI GCGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 98
Hin1II CATG 8 cut(s) 196, 341, 524, 765, 881, 1392, 1519, 1753
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HincII GTYRAC 2 cut(s) 222, 1098
HindII GTYRAC 2 cut(s) 222, 1098
HindIII AAGCTT 1 cut(s) 1581
HinfI GANTC 2 cut(s) 266, 1127
HpaI GTTAAC 1 cut(s) 222
HpaII CCGG 1 cut(s) 289
HphI GGTGA 3 cut(s) 691, 1082, 1631
Hpy166II GTNNAC 4 cut(s) 222, 470, 827, 1098
Hpy188III TCNNGA 7 cut(s) 315, 392, 643, 1239, 1382, 1516, 1731
Hpy8I GTNNAC 4 cut(s) 222, 470, 827, 1098
Hpy99I CGWCG 3 cut(s) 69, 118, 300
HpyAV CCTTC 4 cut(s) 943, 1051, 1548, 1619
HpyCH4III ACNGT 7 cut(s) 372, 474, 733, 831, 1400, 1513, 1530
HpyCH4IV ACGT 3 cut(s) 64, 90, 1100
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 270, 491, 683, 848, 1045
HpySE526I ACGT 3 cut(s) 64, 90, 1100
Hsp92I GRCGYC 1 cut(s) 98
Hsp92II CATG 8 cut(s) 196, 341, 524, 765, 881, 1392, 1519, 1753
HspAI GCGC 1 cut(s) 98
KasI GGCGCC 1 cut(s) 97
KpnI GGTACC 1 cut(s) 371
Ksp22I TGATCA 1 cut(s) 1555
KspAI GTTAAC 1 cut(s) 222
Kzo9I GATC 3 cut(s) 68, 1339, 1555
Lsp1109I GCAGC 4 cut(s) 977, 1266, 1333, 1654
LweI GCATC 8 cut(s) 110, 273, 481, 758, 838, 1214, 1291, 1499
MaeI CTAG 4 cut(s) 135, 176, 344, 954
MaeII ACGT 3 cut(s) 64, 90, 1100
MaeIII GTNAC 5 cut(s) 711, 733, 1243, 1262, 1619
MalI GATC 3 cut(s) 70, 1341, 1557
MbiI CCGCTC 2 cut(s) 159, 320
MboI GATC 3 cut(s) 68, 1339, 1555
MboII GAAGA 8 cut(s) 521, 524, 606, 609, 878, 881, 1075, 1179
MhlI GDGCHC 2 cut(s) 240, 261
Mly113I GGCGCC 1 cut(s) 98
MmeI TCCRAC 4 cut(s) 389, 640, 1143, 1313
Mph1103I ATGCAT 2 cut(s) 522, 879
MroXI GAANNNNTTC 1 cut(s) 1183
MseI TTAA 8 cut(s) 207, 221, 476, 579, 833, 992, 1076, 1302
MslI CAYNNNNRTG 1 cut(s) 1514
MspCI CTTAAG 1 cut(s) 578
MspI CCGG 1 cut(s) 289
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 6 cut(s) 10, 270, 491, 683, 848, 1045
NarI GGCGCC 1 cut(s) 98
NdeI CATATG 1 cut(s) 1084
NdeII GATC 3 cut(s) 68, 1339, 1555
NheI GCTAGC 1 cut(s) 953
NlaIII CATG 8 cut(s) 196, 341, 524, 765, 881, 1392, 1519, 1753
NlaIV GGNNCC 7 cut(s) 99, 369, 537, 894, 1451, 1606, 1747
NmuCI GTSAC 3 cut(s) 711, 733, 1619
NsiI ATGCAT 2 cut(s) 522, 879
NspI RCATGY 4 cut(s) 524, 765, 881, 1392
PagI TCATGA 1 cut(s) 1515
PaqCI CACCTGC 1 cut(s) 1661
PceI AGGCCT 1 cut(s) 1660
PdmI GAANNNNTTC 1 cut(s) 1183
PfeI GAWTC 2 cut(s) 266, 1127
PluTI GGCGCC 1 cut(s) 101
PshBI ATTAAT 1 cut(s) 207
Psp124BI GAGCTC 1 cut(s) 261
PspEI GGTNACC 1 cut(s) 1619
PspFI CCCAGC 1 cut(s) 1741
PspN4I GGNNCC 7 cut(s) 99, 369, 537, 894, 1451, 1606, 1747
PstI CTGCAG 2 cut(s) 1135, 1672
PstNI CAGNNNCTG 1 cut(s) 1208
RsaI GTAC 5 cut(s) 369, 730, 978, 1378, 1456
RsaNI GTAC 5 cut(s) 368, 729, 977, 1377, 1455
RseI CAYNNNNRTG 1 cut(s) 1514
SacI GAGCTC 1 cut(s) 261
SaqAI TTAA 8 cut(s) 207, 221, 476, 579, 833, 992, 1076, 1302
Sau3AI GATC 3 cut(s) 68, 1339, 1555
ScaI AGTACT 2 cut(s) 978, 1378
SduI GDGCHC 2 cut(s) 240, 261
SfaNI GCATC 8 cut(s) 110, 273, 481, 758, 838, 1214, 1291, 1499
SfcI CTRYAG 3 cut(s) 1131, 1209, 1668
SfoI GGCGCC 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 1514
SmlI CTYRAG 1 cut(s) 578
SmoI CTYRAG 1 cut(s) 578
SpeI ACTAGT 1 cut(s) 343
SseBI AGGCCT 1 cut(s) 1660
SspDI GGCGCC 1 cut(s) 97
SspMI CTAG 4 cut(s) 135, 176, 344, 954
SstI GAGCTC 1 cut(s) 261
StuI AGGCCT 1 cut(s) 1660
StyI CCWWGG 1 cut(s) 1052
TaaI ACNGT 7 cut(s) 372, 474, 733, 831, 1400, 1513, 1530
TaiI ACGT 3 cut(s) 67, 93, 1103
TaqI TCGA 4 cut(s) 67, 393, 644, 783
TaqII GACCGA 1 cut(s) 154
TatI WGTACW 2 cut(s) 976, 1376
TauI GCSGC 7 cut(s) 126, 156, 159, 230, 355, 455, 812
TfiI GAWTC 2 cut(s) 266, 1127
Tru1I TTAA 8 cut(s) 207, 221, 476, 579, 833, 992, 1076, 1302
Tru9I TTAA 8 cut(s) 207, 221, 476, 579, 833, 992, 1076, 1302
TscAI CASTG 6 cut(s) 133, 362, 738, 951, 1491, 1516
TseFI GTSAC 3 cut(s) 711, 733, 1619
TseI GCWGC 4 cut(s) 965, 1279, 1321, 1667
Tsp45I GTSAC 3 cut(s) 711, 733, 1619
TspDTI ATGAA 3 cut(s) 444, 801, 1196
TspGWI ACGGA 3 cut(s) 120, 258, 1442
TspRI CASTG 6 cut(s) 133, 362, 738, 951, 1491, 1516
Vha464I CTTAAG 1 cut(s) 578
VspI ATTAAT 1 cut(s) 207
XapI RAATTY 8 cut(s) 446, 496, 803, 853, 994, 1183, 1560, 1573
XceI RCATGY 4 cut(s) 524, 765, 881, 1392
XmiI GTMKAC 2 cut(s) 469, 826
XmnI GAANNNNTTC 1 cut(s) 1183
XspI CTAG 4 cut(s) 135, 176, 344, 954
ZrmI AGTACT 2 cut(s) 978, 1378
Zsp2I ATGCAT 2 cut(s) 522, 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.