Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006406

Physical Location & Seq

Genomic Coordinates Reverse (-)

23206796 .. 23210746

Gene Structure 3951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g19610.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGTTGACAAGGCAGTGAACAAGGTTCTTATAAGGGAGTTCAATGCAGACACTGATATTGAAGTGGTGGGGAAGCTCGAGAGGAACTGTGAGCTAGAGTCTAAAAGGGGGGTCTCCATTTTCACTAACATGATGTGTGACCCTTTATGTAGGATTAGGTTCTACCCCCTTCATATTATGCTGGTAGCACAGCTGCTCGAAAATGAGGAGCTTGTCGGAGTGGTTAGAGGATGCATCAAGCATGTGGGGACTGGTTTTGGGGGACATGTTATCGGTTGCATACTAGGCCTTCGAGTCTCTCCCACACACAGGCGGATGGGAATTGGATTCCAATTGATGAACTCCGTGGAGGAGTGGCTACTGAGACATGGAGTGCAGTACACATTCCTGGCCACCGAGAAGAGCAATACTGCCTCTACAAATCTCTTCACTTCCAAATGCAATTACATGAACATCAGCTCACTAGTCATATTCGCGCAACCAATTTGTTCCTCTGAAAAATATATGCTTCCCCAGAACATTAAAATAGAGAAGTTGCATGTAGACCAGGCAATTTCTTTGTATGAAAACAAGCTAACAGGCAAAGACATGTTTCCTACAGACATGGATGTGATCTTAAAGGAAAAGCTCAGCCTGGGAACATGGGTGTGTTATTTTGAAGAACAGGGTTGGATCAACTTGGACAGTGAGGAAAACAACCACGGAACAATCACCAAAACTCATGGCTCTTGGGTCATCTTTAGCATATGGAATACTTGTGAAGCTTACAAGCTTCATATACAAAAGTCACAACCTCTCAGGTATTTTCATGATACCCTGATCCATGCAAAAGAGAAAATCTTCTCCTGGTTGAAAATGCCTCAGAGTAATGTCTCAGTTGAAAGCTCCTTCGGCTTTCTCTTCCTCTATGGGATTCATGGGGAGGGAGAGCAGCTTGGTGAGCTCATGAAACCTGTTTGGAACTTTGCATTAGGGTTGGGGCAGAATGCGAAGGGCAGTAAGATTATAACTGAGATGGGGCTATGTGATCCTCTCCTTAAGCATGTCCCAGACAATCCCAGCATTTCACGTATCCATGATATCTGGTATGCAAAAAGTCTGAGCAGCCACCACCCTGATGAACAAGATGCTCTGCTAATGGAGGGACATCTGGGAAATGTGTTTGTTGATCCAAGGGAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

395

Amino Acids

44.83

Weight (kDa)

6.19

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19610 FvH4_4g19610 FvH4_4g19610 FvH4_4g19610 FvH4_4g19610
malus_domestica	MD13G1155300.v1.1
prunus_persica	Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1
pyrus_communis	pycom13g13210 pycom13g13220
rosa_chinensis	RchiOBHm_Chr4g0424871
rosa_laevigata	RLG00000007413
rosa_multiflora	Rmu_sc0006754.1_g000005
rosa_roxburghii	Rroxscaffold_5G00367090
rosa_rugosa	Rorug03G0364000.1 Rorug04G0199900 Rorug04G0200000 Rorug04G0200100 Rorug04G0200100 Rorug04G0200100
rosa_samantha	Rh4AG257600 Rh4BG263000 Rh4CG273900 Rh4DG258700
rosa_wichuraiana	Rw4G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	32, 1007
AccI	GTMKAC	1 cut(s)	543
AccII	CGCG	1 cut(s)	476
AciI	CCGC	1 cut(s)	313
AclWI	GGATC	4 cut(s)	680, 814, 1022, 1163
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	1178
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	309
AflII	CTTAAG	1 cut(s)	1037
AflIII	ACRYGT	2 cut(s)	265, 588
AgsI	TTSAA	5 cut(s)	43, 62, 659, 853, 881
AhlI	ACTAGT	1 cut(s)	463
AjnI	CCWGG	4 cut(s)	387, 546, 633, 845
Alw21I	GWGCWC	1 cut(s)	945
Alw26I	GTCTC	4 cut(s)	118, 301, 358, 877
AlwI	GGATC	4 cut(s)	680, 814, 1022, 1163
AlwNI	CAGNNNCTG	1 cut(s)	53
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	2 cut(s)	286, 390
ApeKI	GCWGC	3 cut(s)	193, 931, 1104
ApoI	RAATTY	1 cut(s)	1178
Asp700I	GAANNNNTTC	1 cut(s)	839
AspLEI	GCGC	1 cut(s)	478
AsuHPI	GGTGA	2 cut(s)	703, 950
AvaI	CYCGRG	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	945
Bbv12I	GWGCWC	1 cut(s)	945
BbvI	GCAGC	3 cut(s)	180, 943, 1116
BccI	CCATC	2 cut(s)	310, 1009
BciT130I	CCWGG	4 cut(s)	389, 548, 635, 847
BciVI	GTATCC	1 cut(s)	1082
BcoDI	GTCTC	4 cut(s)	118, 301, 358, 877
BcuI	ACTAGT	1 cut(s)	463
BfaI	CTAG	4 cut(s)	95, 284, 464, 1183
BfmI	CTRYAG	1 cut(s)	597
BfrI	CTTAAG	1 cut(s)	1037
BfuI	GTATCC	1 cut(s)	1082
BisI	GCNGC	3 cut(s)	194, 932, 1105
BlpI	GCTNAGC	1 cut(s)	629
BlsI	GCNGC	3 cut(s)	195, 933, 1106
Bme1390I	CCNGG	4 cut(s)	389, 548, 635, 847
BmeT110I	CYCGRG	1 cut(s)	77
BmrFI	CCNGG	4 cut(s)	389, 548, 635, 847
BmsI	GCATC	3 cut(s)	221, 243, 1117
Bpu1102I	GCTNAGC	1 cut(s)	629
BsaAI	YACGTR	1 cut(s)	1070
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	4 cut(s)	345, 634, 700, 1172
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse1I	ACTGG	1 cut(s)	256
BseBI	CCWGG	4 cut(s)	389, 548, 635, 847
BseDI	CCNNGG	4 cut(s)	345, 634, 700, 1172
BseGI	GGATG	3 cut(s)	236, 321, 613
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseMII	CTCAG	7 cut(s)	353, 643, 811, 875, 888, 1002, 1091
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	2 cut(s)	221, 365
BseXI	GCAGC	3 cut(s)	180, 943, 1116
BseYI	CCCAGC	1 cut(s)	1058
BsgI	GTGCAG	1 cut(s)	395
Bsh1236I	CGCG	1 cut(s)	476
BshFI	GGCC	2 cut(s)	288, 392
BsiHKAI	GWGCWC	1 cut(s)	945
BsiHKCI	CYCGRG	1 cut(s)	77
BslFI	GGGAC	4 cut(s)	262, 276, 1031, 1158
BslI	CCNNNNNNNGG	1 cut(s)	309
BsmAI	GTCTC	4 cut(s)	118, 301, 358, 877
BsmFI	GGGAC	4 cut(s)	262, 276, 1031, 1158
BsmI	GAATGC	1 cut(s)	991
BsnI	GGCC	2 cut(s)	288, 392
Bso31I	GGTCTC	1 cut(s)	118
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	945
Bsp143I	GATC	5 cut(s)	612, 672, 819, 1027, 1168
Bsp1720I	GCTNAGC	1 cut(s)	629
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	2 cut(s)	288, 392
BspCNI	CTCAG	7 cut(s)	354, 642, 810, 874, 887, 1003, 1092
BspFNI	CGCG	1 cut(s)	476
BspHI	TCATGA	2 cut(s)	808, 945
BspPI	GGATC	4 cut(s)	680, 814, 1022, 1163
BspQI	GCTCTTC	1 cut(s)	395
BspTI	CTTAAG	1 cut(s)	1037
BspTNI	GGTCTC	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	4 cut(s)	345, 634, 700, 1172
BssMI	GATC	5 cut(s)	612, 672, 819, 1027, 1168
BssT1I	CCWWGG	1 cut(s)	1172
Bst2UI	CCWGG	4 cut(s)	389, 548, 635, 847
Bst4CI	ACNGT	2 cut(s)	89, 686
Bst6I	CTCTTC	3 cut(s)	395, 431, 905
BstAFI	CTTAAG	1 cut(s)	1037
BstBAI	YACGTR	1 cut(s)	1070
BstDEI	CTNAG	7 cut(s)	362, 629, 797, 861, 874, 1011, 1100
BstDSI	CCRYGG	2 cut(s)	345, 700
BstF5I	GGATG	3 cut(s)	236, 321, 613
BstFNI	CGCG	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	5 cut(s)	615, 675, 822, 1030, 1171
BstMAI	GTCTC	4 cut(s)	118, 301, 358, 877
BstMBI	GATC	5 cut(s)	612, 672, 819, 1027, 1168
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 891, 940
BstNI	CCWGG	4 cut(s)	389, 548, 635, 847
BstNSI	RCATGY	5 cut(s)	245, 269, 542, 592, 1046
BstSCI	CCNGG	4 cut(s)	387, 546, 633, 845
BstSFI	CTRYAG	1 cut(s)	597
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	3 cut(s)	180, 943, 1116
BsuI	GTATCC	1 cut(s)	1082
BsuRI	GGCC	2 cut(s)	288, 392
BtgI	CCRYGG	2 cut(s)	345, 700
BtsCI	GGATG	3 cut(s)	236, 321, 613
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	3 cut(s)	21, 51, 691
CaiI	CAGNNNCTG	1 cut(s)	53
CciI	TCATGA	2 cut(s)	808, 945
CfoI	GCGC	1 cut(s)	478
Csp6I	GTAC	1 cut(s)	379
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	7 cut(s)	362, 629, 797, 861, 874, 1011, 1100
DpnI	GATC	5 cut(s)	614, 674, 821, 1029, 1170
DpnII	GATC	5 cut(s)	612, 672, 819, 1027, 1168
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	3 cut(s)	395, 431, 905
EarI	CTCTTC	3 cut(s)	395, 431, 905
EciI	GGCGGA	1 cut(s)	328
Ecl136II	GAGCTC	1 cut(s)	943
Eco130I	CCWWGG	1 cut(s)	1172
Eco147I	AGGCCT	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	945
Eco31I	GGTCTC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	1081
Eco53kI	GAGCTC	1 cut(s)	943
Eco88I	CYCGRG	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	943
EcoRI	GAATTC	1 cut(s)	1178
EcoRII	CCWGG	4 cut(s)	387, 546, 633, 845
EcoRV	GATATC	1 cut(s)	1081
EcoT14I	CCWWGG	1 cut(s)	1172
EcoT22I	ATGCAT	1 cut(s)	236
EcoT38I	GRGCYC	1 cut(s)	945
ErhI	CCWWGG	1 cut(s)	1172
FaqI	GGGAC	4 cut(s)	262, 276, 1031, 1158
FauNDI	CATATG	1 cut(s)	746
FblI	GTMKAC	1 cut(s)	543
Fnu4HI	GCNGC	3 cut(s)	194, 932, 1105
FokI	GGATG	3 cut(s)	243, 328, 620
FriOI	GRGCYC	1 cut(s)	945
Fsp4HI	GCNGC	3 cut(s)	194, 932, 1105
FspBI	CTAG	4 cut(s)	95, 284, 464, 1183
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	3 cut(s)	194, 932, 1105
GsaI	CCCAGC	1 cut(s)	1062
HaeIII	GGCC	2 cut(s)	288, 392
HhaI	GCGC	1 cut(s)	478
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HindIII	AAGCTT	2 cut(s)	762, 770
HinfI	GANTC	4 cut(s)	98, 294, 327, 913
HphI	GGTGA	2 cut(s)	703, 950
Hpy166II	GTNNAC	4 cut(s)	7, 19, 381, 544
Hpy188I	TCNGA	4 cut(s)	218, 496, 864, 1101
Hpy188III	TCNNGA	3 cut(s)	79, 809, 946
Hpy8I	GTNNAC	4 cut(s)	7, 19, 381, 544
HpyAV	CCTTC	4 cut(s)	179, 299, 898, 985
HpyCH4III	ACNGT	2 cut(s)	89, 686
HpyCH4IV	ACGT	1 cut(s)	1069
HpyCH4V	TGCA	9 cut(s)	47, 234, 279, 376, 441, 538, 827, 968, 1091
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 891, 940
HpyF3I	CTNAG	7 cut(s)	362, 629, 797, 861, 874, 1011, 1100
HpySE526I	ACGT	1 cut(s)	1069
HspAI	GCGC	1 cut(s)	476
Kzo9I	GATC	5 cut(s)	612, 672, 819, 1027, 1168
LguI	GCTCTTC	1 cut(s)	395
LmnI	GCTCC	2 cut(s)	208, 890
Lsp1109I	GCAGC	3 cut(s)	180, 943, 1116
LweI	GCATC	3 cut(s)	221, 243, 1117
MaeI	CTAG	4 cut(s)	95, 284, 464, 1183
MaeII	ACGT	1 cut(s)	1069
MaeIII	GTNAC	2 cut(s)	137, 786
MalI	GATC	5 cut(s)	614, 674, 821, 1029, 1170
MboI	GATC	5 cut(s)	612, 672, 819, 1027, 1168
MboII	GAAGA	5 cut(s)	412, 418, 671, 832, 892
MfeI	CAATTG	1 cut(s)	332
MhlI	GDGCHC	1 cut(s)	945
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	6 cut(s)	321, 332, 442, 483, 552, 1178
MluNI	TGGCCA	1 cut(s)	392
MlyI	GAGTC	2 cut(s)	107, 303
MmeI	TCCRAC	2 cut(s)	196, 650
Mox20I	TGGCCA	1 cut(s)	392
Mph1103I	ATGCAT	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	839
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	3 cut(s)	522, 617, 1038
MslI	CAYNNNNRTG	4 cut(s)	128, 608, 646, 1116
Msp20I	TGGCCA	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	193
MspCI	CTTAAG	1 cut(s)	1037
MspR9I	CCNGG	4 cut(s)	389, 548, 635, 847
MunI	CAATTG	1 cut(s)	332
Mva1269I	GAATGC	1 cut(s)	991
MvaI	CCWGG	4 cut(s)	389, 548, 635, 847
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	3 cut(s)	285, 891, 940
NdeI	CATATG	1 cut(s)	746
NdeII	GATC	5 cut(s)	612, 672, 819, 1027, 1168
NmuCI	GTSAC	2 cut(s)	137, 786
NsiI	ATGCAT	1 cut(s)	236
NspI	RCATGY	5 cut(s)	245, 269, 542, 592, 1046
PaeR7I	CTCGAG	1 cut(s)	77
PagI	TCATGA	2 cut(s)	808, 945
PceI	AGGCCT	1 cut(s)	288
PciI	ACATGT	2 cut(s)	265, 588
PciSI	GCTCTTC	1 cut(s)	395
PctI	GAATGC	1 cut(s)	991
PdmI	GAANNNNTTC	1 cut(s)	839
PfeI	GAWTC	2 cut(s)	327, 913
PkrI	GCNGC	3 cut(s)	195, 933, 1106
PleI	GAGTC	2 cut(s)	106, 302
PpsI	GAGTC	2 cut(s)	106, 302
Ppu21I	YACGTR	1 cut(s)	1070
PscI	ACATGT	2 cut(s)	265, 588
PsiI	TTATAA	2 cut(s)	32, 1007
Psp124BI	GAGCTC	1 cut(s)	945
Psp6I	CCWGG	4 cut(s)	387, 546, 633, 845
PspFI	CCCAGC	1 cut(s)	1058
PspGI	CCWGG	4 cut(s)	387, 546, 633, 845
PstNI	CAGNNNCTG	1 cut(s)	53
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	4 cut(s)	128, 608, 646, 1116
SacI	GAGCTC	1 cut(s)	945
SapI	GCTCTTC	1 cut(s)	395
SaqAI	TTAA	3 cut(s)	522, 617, 1038
SatI	GCNGC	3 cut(s)	194, 932, 1105
Sau3AI	GATC	5 cut(s)	612, 672, 819, 1027, 1168
SchI	GAGTC	2 cut(s)	107, 303
ScrFI	CCNGG	4 cut(s)	389, 548, 635, 847
SduI	GDGCHC	1 cut(s)	945
SfaNI	GCATC	3 cut(s)	221, 243, 1117
SfcI	CTRYAG	1 cut(s)	597
Sfr274I	CTCGAG	1 cut(s)	77
SlaI	CTCGAG	1 cut(s)	77
SmiMI	CAYNNNNRTG	4 cut(s)	128, 608, 646, 1116
SmlI	CTYRAG	2 cut(s)	77, 1037
SmoI	CTYRAG	2 cut(s)	77, 1037
SpeI	ACTAGT	1 cut(s)	463
Sse9I	AATT	6 cut(s)	321, 332, 442, 483, 552, 1178
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	4 cut(s)	95, 284, 464, 1183
SstI	GAGCTC	1 cut(s)	945
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	4 cut(s)	387, 546, 633, 845
StyI	CCWWGG	1 cut(s)	1172
TaaI	ACNGT	2 cut(s)	89, 686
TaiI	ACGT	1 cut(s)	1072
TaqI	TCGA	3 cut(s)	78, 198, 292
TasI	AATT	6 cut(s)	321, 332, 442, 483, 552, 1178
TatI	WGTACW	1 cut(s)	378
TfiI	GAWTC	2 cut(s)	327, 913
Tru1I	TTAA	3 cut(s)	522, 617, 1038
Tru9I	TTAA	3 cut(s)	522, 617, 1038
TscAI	CASTG	3 cut(s)	21, 58, 691
TseFI	GTSAC	2 cut(s)	137, 786
TseI	GCWGC	3 cut(s)	193, 931, 1104
Tsp45I	GTSAC	2 cut(s)	137, 786
TspDTI	ATGAA	9 cut(s)	161, 353, 464, 579, 764, 797, 905, 962, 1134
TspGWI	ACGGA	2 cut(s)	334, 717
TspRI	CASTG	3 cut(s)	21, 58, 691
Vha464I	CTTAAG	1 cut(s)	1037
XapI	RAATTY	1 cut(s)	1178
XceI	RCATGY	5 cut(s)	245, 269, 542, 592, 1046
XhoI	CTCGAG	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	543
XmnI	GAANNNNTTC	1 cut(s)	839
XspI	CTAG	4 cut(s)	95, 284, 464, 1183
Zsp2I	ATGCAT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.