Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006406

Physical Location & Seq

Genomic Coordinates Forward (+)

9298283 .. 9301708

Gene Structure 3426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G118400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGTTGACAGTGCAGAGAACAAGGTTCTTATAAGGGAATTCAATGCAGACACAGATAGAGAAGTGGTGGGGAAGCTAGAGAGGAACTGTGAGCTAGGGTCTAAAAGGGGGGTCTCCATTTTCACTAACATGATGAGTGACCCTTGTTGTAGGATTAGGTTCTACCCCCTTCATGTTATGCTGGTAGCAGAGCTGCTCGAAAACGGGGAGCTTGTTGGAGTGGTTCGAGGATGCATGAAGCATGTAGGCACTGGTTTTGGGGCAAGCTACGAGATAGGTAGCATACTAGGCCTTCGCGTCTCTCCTACACACCGGAGGATGGGAATTGGATTGAAACTCATGAACTCAGTGGAGGAGTGGCTGCTGAGGAAGGGAGCACAGTACACATTCCTGGCAACCGAAAAGAGCAACATCGCCTCTACAAATCTCTTCACTTTCAAATGCAATTATGTGAACCTCAGCTCACTAGTCATATTTGTTCAGCCAATTTGTTCCCCTATTGATGATCTGCTTCCCCAAGAGATAAAAATAGAGAAGCTGCACATAGACCAAGCAATTTTCTTGTACAAAAATAAGCTAAGAGGCAAAGACATGTATCCGACAGACATCGATGTGATCTTGAAGGAGAAGCTGAGCCTCGGCACTTGGGTCTGCTATTTCAAAGAACATGGTTGGATCAACTTAAACACCGAGGAAAATGGTAAGGACATCACCAGTAAAACTCAAAGCTCTTGGGTAATCTTTAGCATATGGAATACGTGTGAAGCTTACAAGCTTCATATAAGAAAGTCTCATCCACTAAGGTCTTTTCATGCTACCCTAAGCCATGCAAGGGAGAAAATATTGTCCTGCCTAAAATTGCCTGTCCGTGTCTCCATGCAGAGCACCTTCGGGTTTCTGTTTCTCTACGGGATTCACGGAGAGGGAGAGAAGCTCGGGGAGCTCATGAAATCTGTGTGGAACTTCGCATCACGGTTGGGACAAAATGTGAAGGACAGCAAGTTGATTTTAACTGAGCTGGCGTTGTGTGATCCTCTCATAAAGCATGTCCCCAAGGATTCCAATATGTCATGTATCAATGATGTCTGGTATGCGAAAAGCTTGATTAGCCACGCTGATGAAAAAGATGAACTGCTGCTGAAGGGACAACTAGGTAATGTGTTTGTTGATCCAAGAGAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

395

Amino Acids

44.77

Weight (kDa)

8.38

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19610 FvH4_4g19610 FvH4_4g19610 FvH4_4g19610 FvH4_4g19610
malus_domestica	MD13G1155300.v1.1
prunus_persica	Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1
pyrus_communis	pycom13g13210 pycom13g13220
rosa_chinensis	RchiOBHm_Chr4g0424871
rosa_laevigata	RLG00000007413
rosa_multiflora	Rmu_sc0006754.1_g000005
rosa_roxburghii	Rroxscaffold_5G00367090
rosa_rugosa	Rorug03G0364000.1 Rorug04G0199900 Rorug04G0200000 Rorug04G0200100 Rorug04G0200100 Rorug04G0200100
rosa_samantha	Rh4AG257600 Rh4BG263000 Rh4CG273900 Rh4DG258700
rosa_wichuraiana	Rw4G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	32
AccII	CGCG	1 cut(s)	297
AclWI	GGATC	3 cut(s)	683, 1025, 1163
AcsI	RAATTY	2 cut(s)	38, 1178
AcuI	CTGAAG	1 cut(s)	1160
AfaI	GTAC	2 cut(s)	383, 566
AfiI	CCNNNNNNNGG	2 cut(s)	319, 832
AflIII	ACRYGT	2 cut(s)	591, 758
AgsI	TTSAA	5 cut(s)	43, 334, 439, 622, 661
AhlI	ACTAGT	1 cut(s)	466
AjnI	CCWGG	1 cut(s)	390
Alw21I	GWGCWC	3 cut(s)	379, 887, 945
Alw26I	GTCTC	4 cut(s)	118, 304, 795, 877
AlwI	GGATC	3 cut(s)	683, 1025, 1163
Ama87I	CYCGRG	1 cut(s)	935
AoxI	GGCC	1 cut(s)	289
ApeKI	GCWGC	4 cut(s)	193, 361, 538, 1135
ApoI	RAATTY	2 cut(s)	38, 1178
AsuHPI	GGTGA	1 cut(s)	703
AvaI	CYCGRG	1 cut(s)	935
BanII	GRGCYC	1 cut(s)	945
Bbv12I	GWGCWC	3 cut(s)	379, 887, 945
BbvCI	CCTCAGC	2 cut(s)	365, 458
BbvI	GCAGC	4 cut(s)	180, 348, 525, 1122
BccI	CCATC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	392
BciVI	GTATCC	1 cut(s)	606
BcoDI	GTCTC	4 cut(s)	118, 304, 795, 877
BcuI	ACTAGT	1 cut(s)	466
BfaI	CTAG	6 cut(s)	77, 95, 287, 467, 1151, 1183
BfuI	GTATCC	1 cut(s)	606
BisI	GCNGC	4 cut(s)	194, 362, 539, 1136
BlpI	GCTNAGC	1 cut(s)	632
BlsI	GCNGC	4 cut(s)	195, 363, 540, 1137
Bme1390I	CCNGG	1 cut(s)	392
BmeT110I	CYCGRG	1 cut(s)	935
BmrFI	CCNGG	1 cut(s)	392
BmsI	GCATC	2 cut(s)	221, 977
BplI	GAGNNNNNCTC	2 cut(s)	918, 950
Bpu10I	CCTNAGC	3 cut(s)	365, 458, 821
Bpu1102I	GCTNAGC	1 cut(s)	632
Bsa29I	ATCGAT	1 cut(s)	609
BsaAI	YACGTR	1 cut(s)	759
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	3 cut(s)	637, 690, 1053
BsaWI	WCCGGW	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 832
Bse1I	ACTGG	2 cut(s)	256, 714
BseBI	CCWGG	1 cut(s)	392
BseCI	ATCGAT	1 cut(s)	609
BseDI	CCNNGG	3 cut(s)	637, 690, 1053
BseGI	GGATG	3 cut(s)	236, 324, 793
BseLI	CCNNNNNNNGG	2 cut(s)	319, 832
BseMII	CTCAG	5 cut(s)	356, 360, 472, 623, 1005
BseNI	ACTGG	2 cut(s)	256, 714
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	4 cut(s)	180, 348, 525, 1122
BsgI	GTGCAG	2 cut(s)	33, 524
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	291
BshVI	ATCGAT	1 cut(s)	609
BsiHKAI	GWGCWC	3 cut(s)	379, 887, 945
BsiHKCI	CYCGRG	1 cut(s)	935
BsiSI	CCGG	1 cut(s)	313
BslFI	GGGAC	3 cut(s)	993, 1034, 1158
BslI	CCNNNNNNNGG	2 cut(s)	319, 832
BsmAI	GTCTC	4 cut(s)	118, 304, 795, 877
BsmBI	CGTCTC	1 cut(s)	304
BsmFI	GGGAC	3 cut(s)	993, 1034, 1158
BsnI	GGCC	1 cut(s)	291
Bso31I	GGTCTC	1 cut(s)	118
BsoBI	CYCGRG	1 cut(s)	935
Bsp1286I	GDGCHC	3 cut(s)	379, 887, 945
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	5 cut(s)	505, 615, 675, 1030, 1168
Bsp1720I	GCTNAGC	1 cut(s)	632
BspANI	GGCC	1 cut(s)	291
BspCNI	CTCAG	5 cut(s)	357, 359, 471, 624, 1006
BspDI	ATCGAT	1 cut(s)	609
BspFNI	CGCG	1 cut(s)	297
BspHI	TCATGA	2 cut(s)	339, 945
BspPI	GGATC	3 cut(s)	683, 1025, 1163
BspTNI	GGTCTC	1 cut(s)	118
BsrGI	TGTACA	1 cut(s)	564
BsrI	ACTGG	2 cut(s)	256, 714
BssECI	CCNNGG	3 cut(s)	637, 690, 1053
BssMI	GATC	5 cut(s)	505, 615, 675, 1030, 1168
BssT1I	CCWWGG	1 cut(s)	1053
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	4 cut(s)	11, 89, 381, 975
Bst6I	CTCTTC	1 cut(s)	434
BstAUI	TGTACA	1 cut(s)	564
BstBAI	YACGTR	1 cut(s)	759
BstC8I	GCNNGC	2 cut(s)	265, 1020
BstDEI	CTNAG	8 cut(s)	346, 365, 458, 578, 632, 800, 821, 1014
BstF5I	GGATG	3 cut(s)	236, 324, 793
BstFNI	CGCG	1 cut(s)	297
BstKTI	GATC	5 cut(s)	508, 618, 678, 1033, 1171
BstMAI	GTCTC	4 cut(s)	118, 304, 795, 877
BstMBI	GATC	5 cut(s)	505, 615, 675, 1030, 1168
BstMWI	GCNNNNNNNGC	3 cut(s)	288, 940, 1107
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	3 cut(s)	245, 595, 1049
BstSCI	CCNGG	1 cut(s)	390
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	4 cut(s)	180, 348, 525, 1122
Bsu15I	ATCGAT	1 cut(s)	609
BsuI	GTATCC	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	291
BsuTUI	ATCGAT	1 cut(s)	609
BtgZI	GCGATG	1 cut(s)	397
BtsCI	GGATG	3 cut(s)	236, 324, 793
BtsIMutI	CAGTG	3 cut(s)	16, 249, 354
Cac8I	GCNNGC	2 cut(s)	265, 1020
CciI	TCATGA	2 cut(s)	339, 945
ClaI	ATCGAT	1 cut(s)	609
CseI	GACGC	1 cut(s)	286
Csp6I	GTAC	2 cut(s)	382, 565
CviQI	GTAC	2 cut(s)	382, 565
DdeI	CTNAG	8 cut(s)	346, 365, 458, 578, 632, 800, 821, 1014
DpnI	GATC	5 cut(s)	507, 617, 677, 1032, 1170
DpnII	GATC	5 cut(s)	505, 615, 675, 1030, 1168
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Ecl136II	GAGCTC	1 cut(s)	943
Eco130I	CCWWGG	1 cut(s)	1053
Eco147I	AGGCCT	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	945
Eco31I	GGTCTC	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	943
Eco57I	CTGAAG	1 cut(s)	1160
Eco88I	CYCGRG	1 cut(s)	935
EcoICRI	GAGCTC	1 cut(s)	943
EcoRI	GAATTC	2 cut(s)	38, 1178
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	1053
EcoT22I	ATGCAT	1 cut(s)	236
EcoT38I	GRGCYC	1 cut(s)	945
ErhI	CCWWGG	1 cut(s)	1053
Esp3I	CGTCTC	1 cut(s)	304
FaqI	GGGAC	3 cut(s)	993, 1034, 1158
FauNDI	CATATG	1 cut(s)	749
Fnu4HI	GCNGC	4 cut(s)	194, 362, 539, 1136
FokI	GGATG	3 cut(s)	243, 331, 780
FriOI	GRGCYC	1 cut(s)	945
Fsp4HI	GCNGC	4 cut(s)	194, 362, 539, 1136
FspBI	CTAG	6 cut(s)	77, 95, 287, 467, 1151, 1183
GluI	GCNGC	4 cut(s)	194, 362, 539, 1136
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	1 cut(s)	313
HgaI	GACGC	1 cut(s)	286
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HindIII	AAGCTT	3 cut(s)	765, 773, 1099
HinfI	GANTC	2 cut(s)	913, 1058
HpaII	CCGG	1 cut(s)	313
HphI	GGTGA	1 cut(s)	703
Hpy166II	GTNNAC	3 cut(s)	7, 384, 454
Hpy188I	TCNGA	1 cut(s)	600
Hpy188III	TCNNGA	3 cut(s)	340, 619, 946
Hpy8I	GTNNAC	3 cut(s)	7, 384, 454
HpyAV	CCTTC	7 cut(s)	179, 302, 364, 616, 898, 985, 1135
HpyCH4III	ACNGT	4 cut(s)	11, 89, 381, 975
HpyCH4IV	ACGT	1 cut(s)	758
HpyCH4V	TGCA	7 cut(s)	14, 47, 234, 444, 541, 830, 880
HpyF10VI	GCNNNNNNNGC	3 cut(s)	288, 940, 1107
HpyF3I	CTNAG	8 cut(s)	346, 365, 458, 578, 632, 800, 821, 1014
HpySE526I	ACGT	1 cut(s)	758
Kzo9I	GATC	5 cut(s)	505, 615, 675, 1030, 1168
LmnI	GCTCC	3 cut(s)	208, 374, 940
Lsp1109I	GCAGC	4 cut(s)	180, 348, 525, 1122
LweI	GCATC	2 cut(s)	221, 977
MaeI	CTAG	6 cut(s)	77, 95, 287, 467, 1151, 1183
MaeII	ACGT	1 cut(s)	758
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	5 cut(s)	507, 617, 677, 1032, 1170
MboI	GATC	5 cut(s)	505, 615, 675, 1030, 1168
MboII	GAAGA	1 cut(s)	421
MhlI	GDGCHC	3 cut(s)	379, 887, 945
MluCI	AATT	7 cut(s)	38, 324, 445, 486, 555, 857, 1178
MmeI	TCCRAC	3 cut(s)	196, 623, 653
Mph1103I	ATGCAT	1 cut(s)	236
MseI	TTAA	2 cut(s)	683, 1010
MslI	CAYNNNNRTG	3 cut(s)	128, 611, 1116
MspI	CCGG	1 cut(s)	313
MspR9I	CCNGG	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	392
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	3 cut(s)	288, 940, 1107
NdeI	CATATG	1 cut(s)	749
NdeII	GATC	5 cut(s)	505, 615, 675, 1030, 1168
NmeAIII	GCCGAG	1 cut(s)	618
NmuCI	GTSAC	1 cut(s)	137
NsiI	ATGCAT	1 cut(s)	236
NspI	RCATGY	3 cut(s)	245, 595, 1049
PagI	TCATGA	2 cut(s)	339, 945
PceI	AGGCCT	1 cut(s)	291
PciI	ACATGT	1 cut(s)	591
PfeI	GAWTC	2 cut(s)	913, 1058
PkrI	GCNGC	4 cut(s)	195, 363, 540, 1137
Ppu21I	YACGTR	1 cut(s)	759
PscI	ACATGT	1 cut(s)	591
PsiI	TTATAA	1 cut(s)	32
Psp124BI	GAGCTC	1 cut(s)	945
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
RsaI	GTAC	2 cut(s)	383, 566
RsaNI	GTAC	2 cut(s)	382, 565
RseI	CAYNNNNRTG	3 cut(s)	128, 611, 1116
SacI	GAGCTC	1 cut(s)	945
SaqAI	TTAA	2 cut(s)	683, 1010
SatI	GCNGC	4 cut(s)	194, 362, 539, 1136
Sau3AI	GATC	5 cut(s)	505, 615, 675, 1030, 1168
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	3 cut(s)	379, 887, 945
SfaNI	GCATC	2 cut(s)	221, 977
SmiMI	CAYNNNNRTG	3 cut(s)	128, 611, 1116
SpeI	ACTAGT	1 cut(s)	466
Sse9I	AATT	7 cut(s)	38, 324, 445, 486, 555, 857, 1178
SseBI	AGGCCT	1 cut(s)	291
SspI	AATATT	1 cut(s)	843
SspMI	CTAG	6 cut(s)	77, 95, 287, 467, 1151, 1183
SstI	GAGCTC	1 cut(s)	945
StuI	AGGCCT	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	1053
TaaI	ACNGT	4 cut(s)	11, 89, 381, 975
TaiI	ACGT	1 cut(s)	761
TaqI	TCGA	3 cut(s)	198, 226, 609
TasI	AATT	7 cut(s)	38, 324, 445, 486, 555, 857, 1178
TatI	WGTACW	2 cut(s)	381, 564
TfiI	GAWTC	2 cut(s)	913, 1058
Tru1I	TTAA	2 cut(s)	683, 1010
Tru9I	TTAA	2 cut(s)	683, 1010
TscAI	CASTG	3 cut(s)	16, 256, 354
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	4 cut(s)	193, 361, 538, 1135
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	8 cut(s)	161, 251, 356, 767, 800, 962, 1134, 1143
TspGWI	ACGGA	2 cut(s)	857, 933
TspRI	CASTG	3 cut(s)	16, 256, 354
XapI	RAATTY	2 cut(s)	38, 1178
XceI	RCATGY	3 cut(s)	245, 595, 1049
XspI	CTAG	6 cut(s)	77, 95, 287, 467, 1151, 1183
Zsp2I	ATGCAT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.