RLG00000007413

FR47-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0006406
Physical Location & Seq
Forward (+)
16578110 .. 16581435
3326 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007413

Sequence Viewer

Length: 1128 bp
ATGTTCCTTCCTCTCAAATTCAATGGACGACCCACTGAAGCTCCAGGAGTTCCGGGTCCAGCTCTCACTTCCAGGACAACCATAGAAGCCCAAGAAACAATTGCAGCTAAGCACAAGCAGGTAGCACAGCTGCTTGAAAATGAGGAGCTTGTCGGAGTGGTTCGAGGATGCATCAAGCATGTGGGGACTGGTTTTGGGGGAGTATATGTGATGGGTTGCATACTAGGCCTTCGAGTCTCTCCTACACACCGGCGGATGGGAATTGGATTTCAATTGATGAACTCAGTGGAGGAGTGGCTGCTGAGAAAAGGAGCACAGTACACATTCCTGGCCACTGAAAGGAACAACACCGCCTCTACAAATCTATTCACTTCCAAATGCAATTACGTGAACATCAGCTCACTAATCATATTTGTGCAACCAATTTGTTCATCTGCAAAACATCTGCTGCCTCAAAATATTAAAATAGAGAAGTTGCATGTAGACCAGGCAATTTCCCTGTACGAAAACAAGCTAAGAAGCAAAGAGATATCTCCAACAGACATGGATGTGATCTTAAAGGAAAAGCTCAGCCTGGGCACTTGGGTGTGTTATTTCGAAGAACAGGGTTGGATCAACTTGGACAGTGAGGGAAACAACAAGGGAACAATCACCAAAACGCAAAGCTCTTGGGTCATCTTTAGCATATGGAATAATTGTGAACCTTACAAGCTTCATATAAGAAAGTCACATCCTCTAAGGTATTTTCATGCTACCTTAAACCATGCAAGAGAGAAAATCTTCTCCTGTTTGAAAATGCCTCAGAGTAAGGTCTCGGTGCAAAGCTCCCTTGGGTTTCTCTTTCTCTATGGGATTCATGGGGAGGGAGAGCAGCTTGGTGAGCTTATGAAATCTGTTTGGAACTTCGCATTAGGATTGGGGCAGAATGTGAAGGACAGCAAGTTGATTATAACTGAGCTGGGGCAGTGTGATCCTCTCATAAAGCATGTCCCAGACAATCCCAGCATTTCACGTATCCATGATCTCTGGTACGCGAAAAGTTTGAGCAGCCACCACCCTGATGACCAAGATGCTCTGCTAATGAAGGGTCCTTTGGGAAATGTGTTTGTTGATCCAAGGGAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

376

Amino Acids

42.13

Weight (kDa)

8.66

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 38 - 128 1.7e-13 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 46 - 125 5e-06 Acetyltransferase (GNAT) domain
FR47 PF08445 69 - 124 3.3e-06 FR47-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 950
Acc36I ACCTGC 1 cut(s) 109
AccI GTMKAC 1 cut(s) 483
AccII CGCG 1 cut(s) 1034
AciI CCGC 2 cut(s) 253, 351
AclWI GGATC 3 cut(s) 620, 965, 1106
AcoI YGGCCR 1 cut(s) 330
AcsI RAATTY 2 cut(s) 17, 1121
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 3 cut(s) 320, 503, 1031
AfiI CCNNNNNNNGG 2 cut(s) 256, 339
AgsI TTSAA 4 cut(s) 22, 137, 272, 793
AjnI CCWGG 5 cut(s) 43, 71, 327, 486, 573
AjuI GAANNNNNNNTTGG 2 cut(s) 1076, 1108
AleI CACNNNNGTG 1 cut(s) 584
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 2 cut(s) 241, 817
AlwI GGATC 3 cut(s) 620, 965, 1106
AoxI GGCC 2 cut(s) 226, 330
ApeKI GCWGC 6 cut(s) 104, 130, 298, 448, 871, 1047
ApoI RAATTY 2 cut(s) 17, 1121
Asp700I GAANNNNTTC 1 cut(s) 779
AspS9I GGNCC 2 cut(s) 56, 1088
AsuC2I CCSGG 1 cut(s) 54
AsuHPI GGTGA 2 cut(s) 643, 890
AsuII TTCGAA 1 cut(s) 597
AvaII GGWCC 2 cut(s) 56, 1088
BaeGI GKGCMC 1 cut(s) 581
BalI TGGCCA 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 6 cut(s) 116, 117, 285, 435, 883, 1059
BccI CCATC 2 cut(s) 205, 250
BciT130I CCWGG 5 cut(s) 45, 73, 329, 488, 575
BciVI GTATCC 1 cut(s) 1025
BcnI CCSGG 1 cut(s) 54
BcoDI GTCTC 2 cut(s) 241, 817
BfaI CTAG 2 cut(s) 224, 1126
BfuAI ACCTGC 1 cut(s) 109
BfuI GTATCC 1 cut(s) 1025
BisI GCNGC 6 cut(s) 105, 131, 299, 449, 872, 1048
BlpI GCTNAGC 2 cut(s) 108, 569
BlsI GCNGC 6 cut(s) 106, 132, 300, 450, 873, 1049
Bme1390I CCNGG 6 cut(s) 45, 54, 73, 329, 488, 575
Bme18I GGWCC 2 cut(s) 56, 1088
BmgT120I GGNCC 2 cut(s) 56, 1088
BmiI GGNNCC 2 cut(s) 57, 1089
BmrFI CCNGG 6 cut(s) 45, 54, 73, 329, 488, 575
BmsI GCATC 3 cut(s) 158, 180, 1060
BpmI CTGGAG 1 cut(s) 27
Bpu1102I GCTNAGC 2 cut(s) 108, 569
Bpu14I TTCGAA 1 cut(s) 597
BpuMI CCSGG 1 cut(s) 54
BsaAI YACGTR 2 cut(s) 388, 1013
BsaI GGTCTC 1 cut(s) 817
BsaJI CCNNGG 3 cut(s) 574, 829, 1115
BsaXI ACNNNNNCTCC 4 cut(s) 25, 55, 192, 222
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 339
Bse118I RCCGGY 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 193
BseBI CCWGG 5 cut(s) 45, 73, 329, 488, 575
BseDI CCNNGG 3 cut(s) 574, 829, 1115
BseGI GGATG 4 cut(s) 173, 261, 553, 730
BseLI CCNNNNNNNGG 2 cut(s) 256, 339
BseMII CTCAG 5 cut(s) 293, 297, 583, 815, 945
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 2 cut(s) 158, 305
BseSI GKGCMC 1 cut(s) 581
BseXI GCAGC 6 cut(s) 116, 117, 285, 435, 883, 1059
BseYI CCCAGC 2 cut(s) 958, 1001
Bsh1236I CGCG 1 cut(s) 1034
BshFI GGCC 2 cut(s) 228, 332
BsiHKAI GWGCWC 1 cut(s) 316
BsiSI CCGG 2 cut(s) 53, 250
BslFI GGGAC 2 cut(s) 199, 974
BslI CCNNNNNNNGG 2 cut(s) 256, 339
BsmAI GTCTC 2 cut(s) 241, 817
BsmFI GGGAC 2 cut(s) 199, 974
BsnI GGCC 2 cut(s) 228, 332
Bso31I GGTCTC 1 cut(s) 817
Bsp119I TTCGAA 1 cut(s) 597
Bsp1286I GDGCHC 2 cut(s) 316, 581
Bsp143I GATC 5 cut(s) 552, 612, 970, 1021, 1111
Bsp1720I GCTNAGC 2 cut(s) 108, 569
BspACI CCGC 2 cut(s) 253, 351
BspANI GGCC 2 cut(s) 228, 332
BspCNI CTCAG 5 cut(s) 294, 296, 582, 814, 946
BspFNI CGCG 1 cut(s) 1034
BspLI GGNNCC 2 cut(s) 57, 1089
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 3 cut(s) 620, 965, 1106
BspT104I TTCGAA 1 cut(s) 597
BspTNI GGTCTC 1 cut(s) 817
BsrFI RCCGGY 1 cut(s) 249
BsrI ACTGG 1 cut(s) 193
BssAI RCCGGY 1 cut(s) 249
BssECI CCNNGG 3 cut(s) 574, 829, 1115
BssMI GATC 5 cut(s) 552, 612, 970, 1021, 1111
BssT1I CCWWGG 2 cut(s) 829, 1115
Bst2UI CCWGG 5 cut(s) 45, 73, 329, 488, 575
Bst4CI ACNGT 2 cut(s) 318, 626
BstBAI YACGTR 2 cut(s) 388, 1013
BstBI TTCGAA 1 cut(s) 597
BstDEI CTNAG 8 cut(s) 108, 283, 302, 515, 569, 737, 801, 954
BstF5I GGATG 4 cut(s) 173, 261, 553, 730
BstFNI CGCG 1 cut(s) 1034
BstKTI GATC 5 cut(s) 555, 615, 973, 1024, 1114
BstMAI GTCTC 2 cut(s) 241, 817
BstMBI GATC 5 cut(s) 552, 612, 970, 1021, 1111
BstMWI GCNNNNNNNGC 2 cut(s) 225, 880
BstNI CCWGG 5 cut(s) 45, 73, 329, 488, 575
BstNSI RCATGY 3 cut(s) 182, 482, 989
BstSCI CCNGG 6 cut(s) 43, 52, 71, 327, 486, 573
BstSLI GKGCMC 1 cut(s) 581
BstUI CGCG 1 cut(s) 1034
BstV1I GCAGC 6 cut(s) 116, 117, 285, 435, 883, 1059
BsuI GTATCC 1 cut(s) 1025
BsuRI GGCC 2 cut(s) 228, 332
BtsCI GGATG 4 cut(s) 173, 261, 553, 730
BtsI GCAGTG 1 cut(s) 971
BtsIMutI CAGTG 5 cut(s) 33, 291, 333, 631, 971
BveI ACCTGC 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 249
Cfr13I GGNCC 2 cut(s) 56, 1088
Csp6I GTAC 3 cut(s) 319, 502, 1030
CviAII CATG 8 cut(s) 179, 479, 544, 749, 764, 857, 986, 1019
CviQI GTAC 3 cut(s) 319, 502, 1030
DdeI CTNAG 8 cut(s) 108, 283, 302, 515, 569, 737, 801, 954
DpnI GATC 5 cut(s) 554, 614, 972, 1023, 1113
DpnII GATC 5 cut(s) 552, 612, 970, 1021, 1111
EaeI YGGCCR 1 cut(s) 330
EciI GGCGGA 1 cut(s) 268
Eco130I CCWWGG 2 cut(s) 829, 1115
Eco147I AGGCCT 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 817
Eco32I GATATC 1 cut(s) 531
Eco47I GGWCC 2 cut(s) 56, 1088
Eco57I CTGAAG 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 1088
EcoRI GAATTC 1 cut(s) 1121
EcoRII CCWGG 5 cut(s) 43, 71, 327, 486, 573
EcoRV GATATC 1 cut(s) 531
EcoT14I CCWWGG 2 cut(s) 829, 1115
EcoT22I ATGCAT 1 cut(s) 173
ErhI CCWWGG 2 cut(s) 829, 1115
FaeI CATG 8 cut(s) 182, 482, 547, 752, 767, 860, 989, 1022
FaqI GGGAC 2 cut(s) 199, 974
FatI CATG 8 cut(s) 178, 478, 543, 748, 763, 856, 985, 1018
FauNDI CATATG 1 cut(s) 686
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 6 cut(s) 105, 131, 299, 449, 872, 1048
FokI GGATG 4 cut(s) 180, 268, 560, 717
Fsp4HI GCNGC 6 cut(s) 105, 131, 299, 449, 872, 1048
FspBI CTAG 2 cut(s) 224, 1126
GluI GCNGC 6 cut(s) 105, 131, 299, 449, 872, 1048
GsaI CCCAGC 2 cut(s) 962, 1005
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 2 cut(s) 228, 332
HapII CCGG 2 cut(s) 53, 250
Hin1II CATG 8 cut(s) 182, 482, 547, 752, 767, 860, 989, 1022
HindIII AAGCTT 1 cut(s) 710
HinfI GANTC 2 cut(s) 234, 853
HpaII CCGG 2 cut(s) 53, 250
HphI GGTGA 2 cut(s) 643, 890
Hpy166II GTNNAC 4 cut(s) 321, 391, 484, 701
Hpy188I TCNGA 2 cut(s) 155, 804
Hpy8I GTNNAC 4 cut(s) 321, 391, 484, 701
HpyAV CCTTC 4 cut(s) 17, 239, 925, 1078
HpyCH4III ACNGT 2 cut(s) 318, 626
HpyCH4IV ACGT 2 cut(s) 387, 1012
HpyCH4V TGCA 9 cut(s) 104, 171, 219, 381, 418, 437, 478, 767, 820
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 880
HpyF3I CTNAG 8 cut(s) 108, 283, 302, 515, 569, 737, 801, 954
HpySE526I ACGT 2 cut(s) 387, 1012
Hsp92II CATG 8 cut(s) 182, 482, 547, 752, 767, 860, 989, 1022
Kzo9I GATC 5 cut(s) 552, 612, 970, 1021, 1111
LmnI GCTCC 4 cut(s) 46, 145, 311, 830
Lsp1109I GCAGC 6 cut(s) 116, 117, 285, 435, 883, 1059
LweI GCATC 3 cut(s) 158, 180, 1060
MaeI CTAG 2 cut(s) 224, 1126
MaeII ACGT 2 cut(s) 387, 1012
MaeIII GTNAC 1 cut(s) 726
MalI GATC 5 cut(s) 554, 614, 972, 1023, 1113
MboI GATC 5 cut(s) 552, 612, 970, 1021, 1111
MboII GAAGA 2 cut(s) 611, 772
MfeI CAATTG 2 cut(s) 99, 272
MhlI GDGCHC 2 cut(s) 316, 581
MlsI TGGCCA 1 cut(s) 332
MluCI AATT 9 cut(s) 17, 99, 261, 272, 382, 423, 492, 694, 1121
MluNI TGGCCA 1 cut(s) 332
MlyI GAGTC 1 cut(s) 243
MmeI TCCRAC 3 cut(s) 133, 560, 590
Mox20I TGGCCA 1 cut(s) 332
Mph1103I ATGCAT 1 cut(s) 173
MroXI GAANNNNTTC 1 cut(s) 779
MscI TGGCCA 1 cut(s) 332
MseI TTAA 3 cut(s) 462, 557, 758
MslI CAYNNNNRTG 4 cut(s) 413, 548, 584, 1059
Msp20I TGGCCA 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 2 cut(s) 53, 250
MspR9I CCNGG 6 cut(s) 45, 54, 73, 329, 488, 575
MunI CAATTG 2 cut(s) 99, 272
MvaI CCWGG 5 cut(s) 45, 73, 329, 488, 575
MvnI CGCG 1 cut(s) 1034
MwoI GCNNNNNNNGC 2 cut(s) 225, 880
NciI CCSGG 1 cut(s) 54
NdeI CATATG 1 cut(s) 686
NdeII GATC 5 cut(s) 552, 612, 970, 1021, 1111
NlaIII CATG 8 cut(s) 182, 482, 547, 752, 767, 860, 989, 1022
NlaIV GGNNCC 2 cut(s) 57, 1089
NmuCI GTSAC 1 cut(s) 726
NsiI ATGCAT 1 cut(s) 173
NspI RCATGY 3 cut(s) 182, 482, 989
NspV TTCGAA 1 cut(s) 597
OliI CACNNNNGTG 1 cut(s) 584
PceI AGGCCT 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 779
PfeI GAWTC 1 cut(s) 853
PfoI TCCNGGA 2 cut(s) 43, 71
PkrI GCNGC 6 cut(s) 106, 132, 300, 450, 873, 1049
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
Ppu21I YACGTR 2 cut(s) 388, 1013
PpuMI RGGWCCY 1 cut(s) 1088
PsiI TTATAA 1 cut(s) 950
Psp5II RGGWCCY 1 cut(s) 1088
Psp6I CCWGG 5 cut(s) 43, 71, 327, 486, 573
PspFI CCCAGC 2 cut(s) 958, 1001
PspGI CCWGG 5 cut(s) 43, 71, 327, 486, 573
PspN4I GGNNCC 2 cut(s) 57, 1089
PspPI GGNCC 2 cut(s) 56, 1088
PspPPI RGGWCCY 1 cut(s) 1088
PvuII CAGCTG 1 cut(s) 130
RsaI GTAC 3 cut(s) 320, 503, 1031
RsaNI GTAC 3 cut(s) 319, 502, 1030
RseI CAYNNNNRTG 4 cut(s) 413, 548, 584, 1059
SaqAI TTAA 3 cut(s) 462, 557, 758
SatI GCNGC 6 cut(s) 105, 131, 299, 449, 872, 1048
Sau3AI GATC 5 cut(s) 552, 612, 970, 1021, 1111
Sau96I GGNCC 2 cut(s) 56, 1088
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 6 cut(s) 45, 54, 73, 329, 488, 575
SduI GDGCHC 2 cut(s) 316, 581
SfaNI GCATC 3 cut(s) 158, 180, 1060
SfuI TTCGAA 1 cut(s) 597
SgrAI CRCCGGYG 1 cut(s) 249
SinI GGWCC 2 cut(s) 56, 1088
SmiMI CAYNNNNRTG 4 cut(s) 413, 548, 584, 1059
Sse9I AATT 9 cut(s) 17, 99, 261, 272, 382, 423, 492, 694, 1121
SseBI AGGCCT 1 cut(s) 228
SsiI CCGC 2 cut(s) 253, 351
SspI AATATT 1 cut(s) 460
SspMI CTAG 2 cut(s) 224, 1126
StuI AGGCCT 1 cut(s) 228
StyD4I CCNGG 6 cut(s) 43, 52, 71, 327, 486, 573
StyI CCWWGG 2 cut(s) 829, 1115
TaaI ACNGT 2 cut(s) 318, 626
TaiI ACGT 2 cut(s) 390, 1015
TaqI TCGA 3 cut(s) 163, 232, 597
TasI AATT 9 cut(s) 17, 99, 261, 272, 382, 423, 492, 694, 1121
TatI WGTACW 1 cut(s) 318
TfiI GAWTC 1 cut(s) 853
Tru1I TTAA 3 cut(s) 462, 557, 758
Tru9I TTAA 3 cut(s) 462, 557, 758
TscAI CASTG 5 cut(s) 40, 291, 340, 631, 971
TseFI GTSAC 1 cut(s) 726
TseI GCWGC 6 cut(s) 104, 130, 298, 448, 871, 1047
Tsp45I GTSAC 1 cut(s) 726
TspDTI ATGAA 7 cut(s) 293, 420, 704, 737, 845, 902, 1097
TspRI CASTG 5 cut(s) 40, 291, 340, 631, 971
VpaK11BI GGWCC 2 cut(s) 56, 1088
XapI RAATTY 2 cut(s) 17, 1121
XceI RCATGY 3 cut(s) 182, 482, 989
XmiI GTMKAC 1 cut(s) 483
XmnI GAANNNNTTC 1 cut(s) 779
XspI CTAG 2 cut(s) 224, 1126
Zsp2I ATGCAT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.