Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006406

Physical Location & Seq

Genomic Coordinates Reverse (-)

50450903 .. 50454792

Gene Structure 3890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39411

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGTTGCATACTAGGCCTTCGAGTCTCTCCCACACACCGGCGGATGGGAATTGGATTTCAATTGATGAACTCAGTGGAGGAGTGGCTGCTGAGAAAAGGAGCACAGTACACATTCCTGGCCACCGAAAGGAACAACACCGCCTCTACAAATCTATTCACTTCCAAATGCAATTACGTGAACATCAGCTCACTAATCATATTTGTGCAACCAATTTGTTCATCTGCAAAACATCTGCTGCCTCAAAATATTAAAATAGAGAAGTTGCATGTAGACCAGGCAATTTCCCTGTACGAAAACAAGCTAAGAACCAAAGACATATCTCCAACAGACATGGATGTGATCTTAAAGGAAAAGCTCAGCCTGGGCACTTGGGTGTGTTATTTCGAAGAACAGGGTTGGATCAACTTGGACGGTGAGGGAAACAACAAGGGAACAATCACCAAAACGCAAAGCTCTTGGGTCATCTTTAGCATGTGGAATAATTGTGAACCTTACAAGCTTCATATAAGAAAGTCACATCCTCTAAGGTATTTTCATGCTACCTTAAACCATGCAAGAGAGAAAATCTTCTCCTGTTTGAAAATGCCTCAGAGTAAGGTCTCGGTGCAAAGCTCCCTTGGGTTTCTCTTTCTCTATGGGATTCATGGGGAGGGAGAGCAGCTTGGTGAGCTTATGAATTCTGTTTGGAATTTTGCATTAGGATTGGGGCAGAATGTGAAGGACAGCAAGTTGATTATAACTGAGCTGGGGCAGTGTGATCCTCTCATAAAGCATGTCCCAGACAATCCCAGCATTTCACGTATCCATGATCTCTGGTACGCGAAAAGTTTGAGCAGCCACCACCCTGATGACCAAGATGCTCTGCTAATGAAGGGTCCTTTGGGAAATGTGTTTGTTGATCCAAGGGAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

305

Amino Acids

34.69

Weight (kDa)

8.39

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FR47	PF08445	2 - 54	7.2e-06	FR47-like protein
Acetyltransf_1	PF00583	3 - 58	6.1e-11	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19610 FvH4_4g19610 FvH4_4g19610 FvH4_4g19610 FvH4_4g19610
malus_domestica	MD13G1155300.v1.1
prunus_persica	Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1
pyrus_communis	pycom13g13210 pycom13g13220
rosa_chinensis	RchiOBHm_Chr4g0424871
rosa_laevigata	RLG00000007413
rosa_multiflora	Rmu_sc0006754.1_g000005
rosa_roxburghii	Rroxscaffold_5G00367090
rosa_rugosa	Rorug03G0364000.1 Rorug04G0199900 Rorug04G0200000 Rorug04G0200100 Rorug04G0200100 Rorug04G0200100
rosa_samantha	Rh4AG257600 Rh4BG263000 Rh4CG273900 Rh4DG258700
rosa_wichuraiana	Rw4G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	740
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	824
AciI	CCGC	2 cut(s)	43, 141
AclWI	GGATC	3 cut(s)	410, 755, 896
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	3 cut(s)	679, 691, 911
AfaI	GTAC	3 cut(s)	110, 293, 821
AfiI	CCNNNNNNNGG	3 cut(s)	39, 46, 129
AgsI	TTSAA	2 cut(s)	62, 583
AjnI	CCWGG	3 cut(s)	117, 276, 363
AjuI	GAANNNNNNNTTGG	2 cut(s)	866, 898
AleI	CACNNNNGTG	1 cut(s)	374
AluBI	AGCT	9 cut(s)	189, 304, 358, 456, 502, 615, 664, 673, 748
AluI	AGCT	9 cut(s)	189, 304, 358, 456, 502, 615, 664, 673, 748
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	2 cut(s)	31, 607
AlwI	GGATC	3 cut(s)	410, 755, 896
AoxI	GGCC	2 cut(s)	16, 120
ApeKI	GCWGC	4 cut(s)	88, 238, 661, 837
ApoI	RAATTY	3 cut(s)	679, 691, 911
Asp700I	GAANNNNTTC	1 cut(s)	569
AspS9I	GGNCC	1 cut(s)	878
AsuHPI	GGTGA	3 cut(s)	428, 433, 680
AsuII	TTCGAA	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	878
BaeGI	GKGCMC	1 cut(s)	371
BalI	TGGCCA	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	4 cut(s)	75, 225, 673, 849
BccI	CCATC	1 cut(s)	40
BciT130I	CCWGG	3 cut(s)	119, 278, 365
BciVI	GTATCC	1 cut(s)	815
BcoDI	GTCTC	2 cut(s)	31, 607
BfaI	CTAG	2 cut(s)	14, 916
BfuI	GTATCC	1 cut(s)	815
BisI	GCNGC	4 cut(s)	89, 239, 662, 838
BlpI	GCTNAGC	1 cut(s)	359
BlsI	GCNGC	4 cut(s)	90, 240, 663, 839
Bme1390I	CCNGG	3 cut(s)	119, 278, 365
Bme18I	GGWCC	1 cut(s)	878
BmgT120I	GGNCC	1 cut(s)	878
BmiI	GGNNCC	1 cut(s)	879
BmrFI	CCNGG	3 cut(s)	119, 278, 365
BmsI	GCATC	1 cut(s)	850
Bpu1102I	GCTNAGC	1 cut(s)	359
Bpu14I	TTCGAA	1 cut(s)	387
BsaAI	YACGTR	2 cut(s)	178, 803
BsaI	GGTCTC	1 cut(s)	607
BsaJI	CCNNGG	3 cut(s)	364, 619, 905
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 46, 129
Bse118I	RCCGGY	1 cut(s)	39
BseBI	CCWGG	3 cut(s)	119, 278, 365
BseDI	CCNNGG	3 cut(s)	364, 619, 905
BseGI	GGATG	3 cut(s)	51, 343, 520
BseLI	CCNNNNNNNGG	3 cut(s)	39, 46, 129
BseMII	CTCAG	5 cut(s)	83, 87, 373, 605, 735
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	371
BseXI	GCAGC	4 cut(s)	75, 225, 673, 849
BseYI	CCCAGC	2 cut(s)	748, 791
Bsh1236I	CGCG	1 cut(s)	824
BshFI	GGCC	2 cut(s)	18, 122
BsiHKAI	GWGCWC	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	764
BslI	CCNNNNNNNGG	3 cut(s)	39, 46, 129
BsmAI	GTCTC	2 cut(s)	31, 607
BsmFI	GGGAC	1 cut(s)	764
BsnI	GGCC	2 cut(s)	18, 122
Bso31I	GGTCTC	1 cut(s)	607
Bsp119I	TTCGAA	1 cut(s)	387
Bsp1286I	GDGCHC	2 cut(s)	106, 371
Bsp143I	GATC	5 cut(s)	342, 402, 760, 811, 901
Bsp1720I	GCTNAGC	1 cut(s)	359
BspACI	CCGC	2 cut(s)	43, 141
BspANI	GGCC	2 cut(s)	18, 122
BspCNI	CTCAG	5 cut(s)	84, 86, 372, 604, 736
BspFNI	CGCG	1 cut(s)	824
BspLI	GGNNCC	1 cut(s)	879
BspPI	GGATC	3 cut(s)	410, 755, 896
BspT104I	TTCGAA	1 cut(s)	387
BspTNI	GGTCTC	1 cut(s)	607
BsrFI	RCCGGY	1 cut(s)	39
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	3 cut(s)	364, 619, 905
BssMI	GATC	5 cut(s)	342, 402, 760, 811, 901
BssT1I	CCWWGG	2 cut(s)	619, 905
Bst2UI	CCWGG	3 cut(s)	119, 278, 365
Bst4CI	ACNGT	2 cut(s)	108, 416
BstBAI	YACGTR	2 cut(s)	178, 803
BstBI	TTCGAA	1 cut(s)	387
BstDEI	CTNAG	7 cut(s)	73, 92, 305, 359, 527, 591, 744
BstF5I	GGATG	3 cut(s)	51, 343, 520
BstFNI	CGCG	1 cut(s)	824
BstKTI	GATC	5 cut(s)	345, 405, 763, 814, 904
BstMAI	GTCTC	2 cut(s)	31, 607
BstMBI	GATC	5 cut(s)	342, 402, 760, 811, 901
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 670
BstNI	CCWGG	3 cut(s)	119, 278, 365
BstNSI	RCATGY	3 cut(s)	272, 478, 779
BstSCI	CCNGG	3 cut(s)	117, 276, 363
BstSLI	GKGCMC	1 cut(s)	371
BstUI	CGCG	1 cut(s)	824
BstV1I	GCAGC	4 cut(s)	75, 225, 673, 849
BsuI	GTATCC	1 cut(s)	815
BsuRI	GGCC	2 cut(s)	18, 122
BtsCI	GGATG	3 cut(s)	51, 343, 520
BtsI	GCAGTG	1 cut(s)	761
BtsIMutI	CAGTG	2 cut(s)	81, 761
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	878
Csp6I	GTAC	3 cut(s)	109, 292, 820
CviAII	CATG	8 cut(s)	269, 334, 475, 539, 554, 647, 776, 809
CviQI	GTAC	3 cut(s)	109, 292, 820
DdeI	CTNAG	7 cut(s)	73, 92, 305, 359, 527, 591, 744
DpnI	GATC	5 cut(s)	344, 404, 762, 813, 903
DpnII	GATC	5 cut(s)	342, 402, 760, 811, 901
EaeI	YGGCCR	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	619, 905
Eco147I	AGGCCT	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	607
Eco47I	GGWCC	1 cut(s)	878
EcoO109I	RGGNCCY	1 cut(s)	878
EcoRI	GAATTC	2 cut(s)	679, 911
EcoRII	CCWGG	3 cut(s)	117, 276, 363
EcoT14I	CCWWGG	2 cut(s)	619, 905
ErhI	CCWWGG	2 cut(s)	619, 905
FaeI	CATG	8 cut(s)	272, 337, 478, 542, 557, 650, 779, 812
FaqI	GGGAC	1 cut(s)	764
FatI	CATG	8 cut(s)	268, 333, 474, 538, 553, 646, 775, 808
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	4 cut(s)	89, 239, 662, 838
FokI	GGATG	3 cut(s)	58, 350, 507
Fsp4HI	GCNGC	4 cut(s)	89, 239, 662, 838
FspBI	CTAG	2 cut(s)	14, 916
GluI	GCNGC	4 cut(s)	89, 239, 662, 838
GsaI	CCCAGC	2 cut(s)	752, 795
HaeIII	GGCC	2 cut(s)	18, 122
HapII	CCGG	1 cut(s)	40
Hin1II	CATG	8 cut(s)	272, 337, 478, 542, 557, 650, 779, 812
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	2 cut(s)	24, 643
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	3 cut(s)	428, 433, 680
Hpy166II	GTNNAC	4 cut(s)	111, 181, 274, 491
Hpy188I	TCNGA	1 cut(s)	594
Hpy8I	GTNNAC	4 cut(s)	111, 181, 274, 491
HpyAV	CCTTC	3 cut(s)	29, 715, 868
HpyCH4III	ACNGT	2 cut(s)	108, 416
HpyCH4IV	ACGT	2 cut(s)	177, 802
HpyCH4V	TGCA	8 cut(s)	9, 171, 208, 227, 268, 557, 610, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 670
HpyF3I	CTNAG	7 cut(s)	73, 92, 305, 359, 527, 591, 744
HpySE526I	ACGT	2 cut(s)	177, 802
Hsp92II	CATG	8 cut(s)	272, 337, 478, 542, 557, 650, 779, 812
Kzo9I	GATC	5 cut(s)	342, 402, 760, 811, 901
LmnI	GCTCC	2 cut(s)	101, 620
Lsp1109I	GCAGC	4 cut(s)	75, 225, 673, 849
LweI	GCATC	1 cut(s)	850
MaeI	CTAG	2 cut(s)	14, 916
MaeII	ACGT	2 cut(s)	177, 802
MaeIII	GTNAC	1 cut(s)	516
MalI	GATC	5 cut(s)	344, 404, 762, 813, 903
MboI	GATC	5 cut(s)	342, 402, 760, 811, 901
MboII	GAAGA	2 cut(s)	401, 562
MfeI	CAATTG	1 cut(s)	62
MhlI	GDGCHC	2 cut(s)	106, 371
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	9 cut(s)	51, 62, 172, 213, 282, 484, 679, 691, 911
MluNI	TGGCCA	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	33
MmeI	TCCRAC	2 cut(s)	350, 380
MnlI	CCTC	8 cut(s)	73, 154, 252, 412, 534, 600, 646, 774
Mox20I	TGGCCA	1 cut(s)	122
MroXI	GAANNNNTTC	1 cut(s)	569
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	3 cut(s)	252, 347, 548
MslI	CAYNNNNRTG	4 cut(s)	203, 338, 374, 849
Msp20I	TGGCCA	1 cut(s)	122
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	3 cut(s)	119, 278, 365
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	3 cut(s)	119, 278, 365
MvnI	CGCG	1 cut(s)	824
MwoI	GCNNNNNNNGC	2 cut(s)	15, 670
NdeII	GATC	5 cut(s)	342, 402, 760, 811, 901
NlaIII	CATG	8 cut(s)	272, 337, 478, 542, 557, 650, 779, 812
NlaIV	GGNNCC	1 cut(s)	879
NmuCI	GTSAC	1 cut(s)	516
NspI	RCATGY	3 cut(s)	272, 478, 779
NspV	TTCGAA	1 cut(s)	387
OliI	CACNNNNGTG	1 cut(s)	374
PceI	AGGCCT	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	569
PfeI	GAWTC	1 cut(s)	643
PkrI	GCNGC	4 cut(s)	90, 240, 663, 839
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Ppu21I	YACGTR	2 cut(s)	178, 803
PpuMI	RGGWCCY	1 cut(s)	878
PsiI	TTATAA	1 cut(s)	740
Psp5II	RGGWCCY	1 cut(s)	878
Psp6I	CCWGG	3 cut(s)	117, 276, 363
PspFI	CCCAGC	2 cut(s)	748, 791
PspGI	CCWGG	3 cut(s)	117, 276, 363
PspN4I	GGNNCC	1 cut(s)	879
PspPI	GGNCC	1 cut(s)	878
PspPPI	RGGWCCY	1 cut(s)	878
RsaI	GTAC	3 cut(s)	110, 293, 821
RsaNI	GTAC	3 cut(s)	109, 292, 820
RseI	CAYNNNNRTG	4 cut(s)	203, 338, 374, 849
SaqAI	TTAA	3 cut(s)	252, 347, 548
SatI	GCNGC	4 cut(s)	89, 239, 662, 838
Sau3AI	GATC	5 cut(s)	342, 402, 760, 811, 901
Sau96I	GGNCC	1 cut(s)	878
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	3 cut(s)	119, 278, 365
SduI	GDGCHC	2 cut(s)	106, 371
SfaNI	GCATC	1 cut(s)	850
SfuI	TTCGAA	1 cut(s)	387
SgrAI	CRCCGGYG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	878
SmiMI	CAYNNNNRTG	4 cut(s)	203, 338, 374, 849
Sse9I	AATT	9 cut(s)	51, 62, 172, 213, 282, 484, 679, 691, 911
SseBI	AGGCCT	1 cut(s)	18
SsiI	CCGC	2 cut(s)	43, 141
SspI	AATATT	1 cut(s)	250
SspMI	CTAG	2 cut(s)	14, 916
StuI	AGGCCT	1 cut(s)	18
StyD4I	CCNGG	3 cut(s)	117, 276, 363
StyI	CCWWGG	2 cut(s)	619, 905
TaaI	ACNGT	2 cut(s)	108, 416
TaiI	ACGT	2 cut(s)	180, 805
TaqI	TCGA	2 cut(s)	22, 387
TasI	AATT	9 cut(s)	51, 62, 172, 213, 282, 484, 679, 691, 911
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	643
Tru1I	TTAA	3 cut(s)	252, 347, 548
Tru9I	TTAA	3 cut(s)	252, 347, 548
TscAI	CASTG	2 cut(s)	81, 761
TseFI	GTSAC	1 cut(s)	516
TseI	GCWGC	4 cut(s)	88, 238, 661, 837
Tsp45I	GTSAC	1 cut(s)	516
TspDTI	ATGAA	7 cut(s)	83, 210, 494, 527, 635, 692, 887
TspRI	CASTG	2 cut(s)	81, 761
VpaK11BI	GGWCC	1 cut(s)	878
XapI	RAATTY	3 cut(s)	679, 691, 911
XceI	RCATGY	3 cut(s)	272, 478, 779
XmiI	GTMKAC	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	569
XspI	CTAG	2 cut(s)	14, 916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.