Rroxscaffold_5G00367090

FR47-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0006406
Physical Location & Seq
Reverse (-)
49005088 .. 49006311
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00367090.1

Sequence Viewer

Length: 945 bp
ATGAGGAGCTTGTCGGAGTGGTTCGAGGATGCATCAAGCATGTGGGGACTGGTTTTGGGGGAGTATATGCGGATGGGAATTGGATTTCAATTGATGAACTCAGTGGAGGAGTGGCTGCTGAGAAAAGGAGCACAGTACACATTCCTGGCCACCGAAAGGAACAACACCGCCTCTACAAATCTATTCACTTCCAAATGCAATTACGTGAACATCAGCTCACTAATCATATTTGTGCAACCAATTTGTTCATCTGCAAAACATCTGCTGCCTCAAAATATTAAAATAGAGAAGTTGCATGTAGACCAGGCAATTTCCCTGTACGAAAACAAGCTACAAAGCAAAGACATATCTCCAACAGACATGGATGTGATCTTAAAGGAAAAGCTCAGCCTGGGCACTTGGGTGTGTTATTTCGAAGAACAGGGTTGGATCAACTTGGACAGTGAGGGAAACAACAAGGGAACAATCACCAAAACGCAAAGCTCTTGGGTCATCTTTAGCATATGGAATAATTGTGAACCATACAAGCTTCATATAAGAAAGTCACATCCTCTAAGGTATTTTCATGCTACCTTAAACCATGCAAGAGAGAAAATCTTCTCCTGTTTGAAAATGCCTCAGAGTAAGGTCTCGGTGCAAAGCTCCCTTGGGTTTCTCTTTCTCTATGGGATTCATGGGGAGGGAGAGCAGCTTGGTGAGCTTATGAAATCTGTTTGGAACTTCGCATTAGGATTGGGGCAGAATGTGAAGGACAGCAAGTTGATTATAACTGAGCTGGGGCAGTATGATCCTCTCATAAAGTATGTCCCAGACAATCCCAGCATTTCACGTATCCATGATCTCTGGTACGCGAAAAGTTTGAGCAGCCACCACCCTGATGACCAAGATGCTCTGCTAATGAAGGGTCCTTTGGGAAATGTGTTTGTTGATCCAAGGGAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

314

Amino Acids

35.95

Weight (kDa)

6.56

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 18 - 67 1.2e-06 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 767
AccI GTMKAC 1 cut(s) 300
AccII CGCG 1 cut(s) 851
AciI CCGC 2 cut(s) 70, 168
AclWI GGATC 3 cut(s) 437, 782, 923
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 1 cut(s) 938
AfaI GTAC 3 cut(s) 137, 320, 848
AfiI CCNNNNNNNGG 1 cut(s) 156
AgsI TTSAA 2 cut(s) 89, 610
AjnI CCWGG 3 cut(s) 144, 303, 390
AjuI GAANNNNNNNTTGG 2 cut(s) 893, 925
AleI CACNNNNGTG 1 cut(s) 401
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 1 cut(s) 634
AlwI GGATC 3 cut(s) 437, 782, 923
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 4 cut(s) 115, 265, 688, 864
ApoI RAATTY 1 cut(s) 938
Asp700I GAANNNNTTC 1 cut(s) 596
AspS9I GGNCC 1 cut(s) 905
AsuHPI GGTGA 2 cut(s) 460, 707
AsuII TTCGAA 1 cut(s) 414
AvaII GGWCC 1 cut(s) 905
BaeGI GKGCMC 1 cut(s) 398
BalI TGGCCA 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 4 cut(s) 102, 252, 700, 876
BccI CCATC 1 cut(s) 67
BciT130I CCWGG 3 cut(s) 146, 305, 392
BciVI GTATCC 1 cut(s) 842
BcoDI GTCTC 1 cut(s) 634
BfaI CTAG 1 cut(s) 943
BfuI GTATCC 1 cut(s) 842
BisI GCNGC 4 cut(s) 116, 266, 689, 865
BlpI GCTNAGC 1 cut(s) 386
BlsI GCNGC 4 cut(s) 117, 267, 690, 866
Bme1390I CCNGG 3 cut(s) 146, 305, 392
Bme18I GGWCC 1 cut(s) 905
BmgT120I GGNCC 1 cut(s) 905
BmiI GGNNCC 1 cut(s) 906
BmrFI CCNGG 3 cut(s) 146, 305, 392
BmsI GCATC 3 cut(s) 19, 41, 877
Bpu1102I GCTNAGC 1 cut(s) 386
Bpu14I TTCGAA 1 cut(s) 414
BsaAI YACGTR 2 cut(s) 205, 830
BsaI GGTCTC 1 cut(s) 634
BsaJI CCNNGG 3 cut(s) 391, 646, 932
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 54
BseBI CCWGG 3 cut(s) 146, 305, 392
BseDI CCNNGG 3 cut(s) 391, 646, 932
BseGI GGATG 4 cut(s) 34, 78, 370, 547
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMII CTCAG 5 cut(s) 110, 114, 400, 632, 762
BseNI ACTGG 1 cut(s) 54
BseRI GAGGAG 2 cut(s) 19, 122
BseSI GKGCMC 1 cut(s) 398
BseXI GCAGC 4 cut(s) 102, 252, 700, 876
BseYI CCCAGC 2 cut(s) 775, 818
Bsh1236I CGCG 1 cut(s) 851
BshFI GGCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 133
BslFI GGGAC 2 cut(s) 60, 791
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 634
BsmFI GGGAC 2 cut(s) 60, 791
BsnI GGCC 1 cut(s) 149
Bso31I GGTCTC 1 cut(s) 634
Bsp119I TTCGAA 1 cut(s) 414
Bsp1286I GDGCHC 2 cut(s) 133, 398
Bsp143I GATC 5 cut(s) 369, 429, 787, 838, 928
Bsp1720I GCTNAGC 1 cut(s) 386
BspACI CCGC 2 cut(s) 70, 168
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 5 cut(s) 111, 113, 399, 631, 763
BspFNI CGCG 1 cut(s) 851
BspLI GGNNCC 1 cut(s) 906
BspPI GGATC 3 cut(s) 437, 782, 923
BspT104I TTCGAA 1 cut(s) 414
BspTNI GGTCTC 1 cut(s) 634
BsrI ACTGG 1 cut(s) 54
BssECI CCNNGG 3 cut(s) 391, 646, 932
BssMI GATC 5 cut(s) 369, 429, 787, 838, 928
BssT1I CCWWGG 2 cut(s) 646, 932
Bst2UI CCWGG 3 cut(s) 146, 305, 392
Bst4CI ACNGT 2 cut(s) 135, 443
BstBAI YACGTR 2 cut(s) 205, 830
BstBI TTCGAA 1 cut(s) 414
BstDEI CTNAG 6 cut(s) 100, 119, 386, 554, 618, 771
BstF5I GGATG 4 cut(s) 34, 78, 370, 547
BstFNI CGCG 1 cut(s) 851
BstKTI GATC 5 cut(s) 372, 432, 790, 841, 931
BstMAI GTCTC 1 cut(s) 634
BstMBI GATC 5 cut(s) 369, 429, 787, 838, 928
BstMWI GCNNNNNNNGC 1 cut(s) 697
BstNI CCWGG 3 cut(s) 146, 305, 392
BstNSI RCATGY 2 cut(s) 43, 299
BstSCI CCNGG 3 cut(s) 144, 303, 390
BstSLI GKGCMC 1 cut(s) 398
BstUI CGCG 1 cut(s) 851
BstV1I GCAGC 4 cut(s) 102, 252, 700, 876
BsuI GTATCC 1 cut(s) 842
BsuRI GGCC 1 cut(s) 149
BtsCI GGATG 4 cut(s) 34, 78, 370, 547
BtsIMutI CAGTG 2 cut(s) 108, 448
Cfr13I GGNCC 1 cut(s) 905
Csp6I GTAC 3 cut(s) 136, 319, 847
CviAII CATG 7 cut(s) 40, 296, 361, 566, 581, 674, 836
CviQI GTAC 3 cut(s) 136, 319, 847
DdeI CTNAG 6 cut(s) 100, 119, 386, 554, 618, 771
DpnI GATC 5 cut(s) 371, 431, 789, 840, 930
DpnII GATC 5 cut(s) 369, 429, 787, 838, 928
EaeI YGGCCR 1 cut(s) 147
Eco130I CCWWGG 2 cut(s) 646, 932
Eco31I GGTCTC 1 cut(s) 634
Eco47I GGWCC 1 cut(s) 905
EcoO109I RGGNCCY 1 cut(s) 905
EcoRI GAATTC 1 cut(s) 938
EcoRII CCWGG 3 cut(s) 144, 303, 390
EcoT14I CCWWGG 2 cut(s) 646, 932
EcoT22I ATGCAT 1 cut(s) 34
ErhI CCWWGG 2 cut(s) 646, 932
FaeI CATG 7 cut(s) 43, 299, 364, 569, 584, 677, 839
FaqI GGGAC 2 cut(s) 60, 791
FatI CATG 7 cut(s) 39, 295, 360, 565, 580, 673, 835
FauNDI CATATG 1 cut(s) 503
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 4 cut(s) 116, 266, 689, 865
FokI GGATG 4 cut(s) 41, 85, 377, 534
Fsp4HI GCNGC 4 cut(s) 116, 266, 689, 865
FspBI CTAG 1 cut(s) 943
GluI GCNGC 4 cut(s) 116, 266, 689, 865
GsaI CCCAGC 2 cut(s) 779, 822
HaeIII GGCC 1 cut(s) 149
Hin1II CATG 7 cut(s) 43, 299, 364, 569, 584, 677, 839
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 1 cut(s) 670
HphI GGTGA 2 cut(s) 460, 707
Hpy166II GTNNAC 4 cut(s) 138, 208, 301, 518
Hpy188I TCNGA 2 cut(s) 16, 621
Hpy8I GTNNAC 4 cut(s) 138, 208, 301, 518
HpyAV CCTTC 2 cut(s) 742, 895
HpyCH4III ACNGT 2 cut(s) 135, 443
HpyCH4IV ACGT 2 cut(s) 204, 829
HpyCH4V TGCA 7 cut(s) 32, 198, 235, 254, 295, 584, 637
HpyF10VI GCNNNNNNNGC 1 cut(s) 697
HpyF3I CTNAG 6 cut(s) 100, 119, 386, 554, 618, 771
HpySE526I ACGT 2 cut(s) 204, 829
Hsp92II CATG 7 cut(s) 43, 299, 364, 569, 584, 677, 839
Kzo9I GATC 5 cut(s) 369, 429, 787, 838, 928
LmnI GCTCC 3 cut(s) 6, 128, 647
Lsp1109I GCAGC 4 cut(s) 102, 252, 700, 876
LweI GCATC 3 cut(s) 19, 41, 877
MaeI CTAG 1 cut(s) 943
MaeII ACGT 2 cut(s) 204, 829
MaeIII GTNAC 1 cut(s) 543
MalI GATC 5 cut(s) 371, 431, 789, 840, 930
MboI GATC 5 cut(s) 369, 429, 787, 838, 928
MboII GAAGA 2 cut(s) 428, 589
MfeI CAATTG 1 cut(s) 89
MhlI GDGCHC 2 cut(s) 133, 398
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 7 cut(s) 78, 89, 199, 240, 309, 511, 938
MluNI TGGCCA 1 cut(s) 149
MmeI TCCRAC 2 cut(s) 377, 407
MnlI CCTC 9 cut(s) 19, 100, 181, 279, 439, 561, 627, 673, 801
Mox20I TGGCCA 1 cut(s) 149
Mph1103I ATGCAT 1 cut(s) 34
MroXI GAANNNNTTC 1 cut(s) 596
MscI TGGCCA 1 cut(s) 149
MseI TTAA 3 cut(s) 279, 374, 575
MslI CAYNNNNRTG 4 cut(s) 230, 365, 401, 876
Msp20I TGGCCA 1 cut(s) 149
MspR9I CCNGG 3 cut(s) 146, 305, 392
MunI CAATTG 1 cut(s) 89
MvaI CCWGG 3 cut(s) 146, 305, 392
MvnI CGCG 1 cut(s) 851
MwoI GCNNNNNNNGC 1 cut(s) 697
NdeI CATATG 1 cut(s) 503
NdeII GATC 5 cut(s) 369, 429, 787, 838, 928
NlaIII CATG 7 cut(s) 43, 299, 364, 569, 584, 677, 839
NlaIV GGNNCC 1 cut(s) 906
NmuCI GTSAC 1 cut(s) 543
NsiI ATGCAT 1 cut(s) 34
NspI RCATGY 2 cut(s) 43, 299
NspV TTCGAA 1 cut(s) 414
OliI CACNNNNGTG 1 cut(s) 401
PdmI GAANNNNTTC 1 cut(s) 596
PfeI GAWTC 1 cut(s) 670
PkrI GCNGC 4 cut(s) 117, 267, 690, 866
Ppu21I YACGTR 2 cut(s) 205, 830
PpuMI RGGWCCY 1 cut(s) 905
PsiI TTATAA 1 cut(s) 767
Psp5II RGGWCCY 1 cut(s) 905
Psp6I CCWGG 3 cut(s) 144, 303, 390
PspFI CCCAGC 2 cut(s) 775, 818
PspGI CCWGG 3 cut(s) 144, 303, 390
PspN4I GGNNCC 1 cut(s) 906
PspPI GGNCC 1 cut(s) 905
PspPPI RGGWCCY 1 cut(s) 905
RsaI GTAC 3 cut(s) 137, 320, 848
RsaNI GTAC 3 cut(s) 136, 319, 847
RseI CAYNNNNRTG 4 cut(s) 230, 365, 401, 876
SaqAI TTAA 3 cut(s) 279, 374, 575
SatI GCNGC 4 cut(s) 116, 266, 689, 865
Sau3AI GATC 5 cut(s) 369, 429, 787, 838, 928
Sau96I GGNCC 1 cut(s) 905
ScrFI CCNGG 3 cut(s) 146, 305, 392
SduI GDGCHC 2 cut(s) 133, 398
SfaNI GCATC 3 cut(s) 19, 41, 877
SfuI TTCGAA 1 cut(s) 414
SinI GGWCC 1 cut(s) 905
SmiMI CAYNNNNRTG 4 cut(s) 230, 365, 401, 876
Sse9I AATT 7 cut(s) 78, 89, 199, 240, 309, 511, 938
SsiI CCGC 2 cut(s) 70, 168
SspI AATATT 1 cut(s) 277
SspMI CTAG 1 cut(s) 943
StyD4I CCNGG 3 cut(s) 144, 303, 390
StyI CCWWGG 2 cut(s) 646, 932
TaaI ACNGT 2 cut(s) 135, 443
TaiI ACGT 2 cut(s) 207, 832
TaqI TCGA 2 cut(s) 24, 414
TasI AATT 7 cut(s) 78, 89, 199, 240, 309, 511, 938
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 1 cut(s) 670
Tru1I TTAA 3 cut(s) 279, 374, 575
Tru9I TTAA 3 cut(s) 279, 374, 575
TscAI CASTG 2 cut(s) 108, 448
TseFI GTSAC 1 cut(s) 543
TseI GCWGC 4 cut(s) 115, 265, 688, 864
Tsp45I GTSAC 1 cut(s) 543
TspDTI ATGAA 7 cut(s) 110, 237, 521, 554, 662, 719, 914
TspRI CASTG 2 cut(s) 108, 448
VpaK11BI GGWCC 1 cut(s) 905
XapI RAATTY 1 cut(s) 938
XceI RCATGY 2 cut(s) 43, 299
XmiI GTMKAC 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 596
XspI CTAG 1 cut(s) 943
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.