Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006406

Physical Location & Seq

Genomic Coordinates Reverse (-)

57212204 .. 57215300

Gene Structure 3097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG257600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGAAGAGATTTCATATCAGGCTATTATTTTGTGCTGCAGCTAATGTTCAAGGCAGTGTGTTCATACTCATTATCTTGTTGAAATCTCGAGTAATAATTCCTGCGGCAGCTAAGCACAAGCAGGTAGCACAGCTGCTTGAAAATGAGGAGCTTGTCGGAGTGGTTCGAGGATGCATCAAGCATGTGGGGACTGGTTTTGGGGGAGTATATGTGATGGGTTGCATACTAGGCCTTCGAGTCTCTCCCACACACCGGCGGATGGGAATTGGATTTCAATTGATGAACTCAGTGGAGGAGTGGCTGCTGAGAAAAGGAGCACAGTACACATTCCTGGCCACTGAAAGGAACAACACCGCCTCTACAAATCTATTCACTTCCAAATGCAATTACGTGAACATCAGCTCACTAATCATATTTGTGCAACCAATTTGTTCATCTGCAAAACATCTGCTGCCACAAAGTATTAAAATAGAGAAGTTGCATGTAGACCAGGCAATTTCCCTGTACGAAAACAAGCTAAGAAGCAAAGACATATCTCCAACAGACATGGATGTGATCTTAAAGGAAAAGCTCAGCCTGGGCACTTGGGTGTGTTATTTCGAAGAACAGGGTTGGATCAACTTGGACAGTGAGGGAAACAACAAGGGAACAATCACCAAAACGCAAAGCTCTTGGGTCATGTTTAGCATATGGAATAATTGTGAACCTTACAAGCTTCATATAAGAAAGTCACATCCTCTAAGGTATTTTCATGCTACCTTAAACCATGCAAGAGAGAAAATCTTCTCCTGTTTGAAAATGCCTCAGAGTAAGGTCTCGGTGCAAAGCTCCCTTGGGTTTCTCTTTCTCTATGGGATTCATGGGGAGGGAGAGCAGCTTGGTGAGCTTATGAAATCTGTTTGGAACTTCGCATTAGGATTGGGGCAGAATGTGAAGGACAGCAAGTTGATTATAACTGAGCTGGGGCAGTGTGATCCTCTCATAAAGCATGTCCCAGACAATCCCAGCATTTCACGTATCCATGATCTCTGGTACGCGAAAAGTTTGAGCAGCCACCACCCTGATGACCAAGATGCTCTGCAATTGAAGGGTCCTTTGGGAAATGTGTTTGTTGATCCAAGGGAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

376

Amino Acids

42.42

Weight (kDa)

9.1

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	45 - 129	3.7e-13	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	47 - 126	5.1e-06	Acetyltransferase (GNAT) domain
FR47	PF08445	70 - 125	3.3e-06	FR47-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19610 FvH4_4g19610 FvH4_4g19610 FvH4_4g19610 FvH4_4g19610
malus_domestica	MD13G1155300.v1.1
prunus_persica	Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1
pyrus_communis	pycom13g13210 pycom13g13220
rosa_chinensis	RchiOBHm_Chr4g0424871
rosa_laevigata	RLG00000007413
rosa_multiflora	Rmu_sc0006754.1_g000005
rosa_roxburghii	Rroxscaffold_5G00367090
rosa_rugosa	Rorug03G0364000.1 Rorug04G0199900 Rorug04G0200000 Rorug04G0200100 Rorug04G0200100 Rorug04G0200100
rosa_samantha	Rh4AG257600 Rh4BG263000 Rh4CG273900 Rh4DG258700
rosa_wichuraiana	Rw4G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	953
Acc36I	ACCTGC	1 cut(s)	112
AccI	GTMKAC	1 cut(s)	486
AccII	CGCG	1 cut(s)	1037
AciI	CCGC	3 cut(s)	104, 256, 354
AclWI	GGATC	3 cut(s)	623, 968, 1109
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	1124
AfaI	GTAC	3 cut(s)	323, 506, 1034
AfiI	CCNNNNNNNGG	3 cut(s)	252, 259, 342
AgsI	TTSAA	6 cut(s)	50, 82, 140, 275, 796, 1087
AjnI	CCWGG	3 cut(s)	330, 489, 576
AjuI	GAANNNNNNNTTGG	2 cut(s)	1079, 1111
AleI	CACNNNNGTG	1 cut(s)	587
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	2 cut(s)	244, 820
AlwI	GGATC	3 cut(s)	623, 968, 1109
Ama87I	CYCGRG	1 cut(s)	87
AoxI	GGCC	2 cut(s)	229, 333
ApeKI	GCWGC	8 cut(s)	35, 38, 107, 133, 301, 451, 874, 1050
ApoI	RAATTY	1 cut(s)	1124
Asp700I	GAANNNNTTC	1 cut(s)	782
AspS9I	GGNCC	1 cut(s)	1091
AsuHPI	GGTGA	2 cut(s)	646, 893
AsuII	TTCGAA	1 cut(s)	600
AvaI	CYCGRG	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	1091
BaeGI	GKGCMC	1 cut(s)	584
BalI	TGGCCA	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	8 cut(s)	22, 50, 119, 120, 288, 438, 886, 1062
BccI	CCATC	2 cut(s)	208, 253
BciT130I	CCWGG	3 cut(s)	332, 491, 578
BciVI	GTATCC	1 cut(s)	1028
BcoDI	GTCTC	2 cut(s)	244, 820
BfaI	CTAG	2 cut(s)	227, 1129
BfmI	CTRYAG	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	112
BfuI	GTATCC	1 cut(s)	1028
BisI	GCNGC	9 cut(s)	36, 39, 105, 108, 134, 302, 452, 875, 1051
BlpI	GCTNAGC	2 cut(s)	111, 572
BlsI	GCNGC	9 cut(s)	37, 40, 106, 109, 135, 303, 453, 876, 1052
Bme1390I	CCNGG	3 cut(s)	332, 491, 578
Bme18I	GGWCC	1 cut(s)	1091
BmeT110I	CYCGRG	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	1091
BmiI	GGNNCC	1 cut(s)	1092
BmrFI	CCNGG	3 cut(s)	332, 491, 578
BmsI	GCATC	3 cut(s)	161, 183, 1063
Bpu1102I	GCTNAGC	2 cut(s)	111, 572
Bpu14I	TTCGAA	1 cut(s)	600
BsaAI	YACGTR	2 cut(s)	391, 1016
BsaI	GGTCTC	1 cut(s)	820
BsaJI	CCNNGG	3 cut(s)	577, 832, 1118
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	3 cut(s)	252, 259, 342
Bse118I	RCCGGY	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	196
BseBI	CCWGG	3 cut(s)	332, 491, 578
BseDI	CCNNGG	3 cut(s)	577, 832, 1118
BseGI	GGATG	4 cut(s)	176, 264, 556, 733
BseLI	CCNNNNNNNGG	3 cut(s)	252, 259, 342
BseMII	CTCAG	5 cut(s)	296, 300, 586, 818, 948
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	2 cut(s)	161, 308
BseSI	GKGCMC	1 cut(s)	584
BseXI	GCAGC	8 cut(s)	22, 50, 119, 120, 288, 438, 886, 1062
BseYI	CCCAGC	2 cut(s)	961, 1004
Bsh1236I	CGCG	1 cut(s)	1037
BshFI	GGCC	2 cut(s)	231, 335
BsiHKAI	GWGCWC	1 cut(s)	319
BsiHKCI	CYCGRG	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	2 cut(s)	202, 977
BslI	CCNNNNNNNGG	3 cut(s)	252, 259, 342
BsmAI	GTCTC	2 cut(s)	244, 820
BsmFI	GGGAC	2 cut(s)	202, 977
BsnI	GGCC	2 cut(s)	231, 335
Bso31I	GGTCTC	1 cut(s)	820
BsoBI	CYCGRG	1 cut(s)	87
Bsp119I	TTCGAA	1 cut(s)	600
Bsp1286I	GDGCHC	2 cut(s)	319, 584
Bsp143I	GATC	5 cut(s)	555, 615, 973, 1024, 1114
Bsp1720I	GCTNAGC	2 cut(s)	111, 572
BspACI	CCGC	3 cut(s)	104, 256, 354
BspANI	GGCC	2 cut(s)	231, 335
BspCNI	CTCAG	5 cut(s)	297, 299, 585, 817, 949
BspFNI	CGCG	1 cut(s)	1037
BspLI	GGNNCC	1 cut(s)	1092
BspMAI	CTGCAG	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	112
BspPI	GGATC	3 cut(s)	623, 968, 1109
BspT104I	TTCGAA	1 cut(s)	600
BspTNI	GGTCTC	1 cut(s)	820
BsrFI	RCCGGY	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	252
BssECI	CCNNGG	3 cut(s)	577, 832, 1118
BssMI	GATC	5 cut(s)	555, 615, 973, 1024, 1114
BssT1I	CCWWGG	2 cut(s)	832, 1118
Bst2UI	CCWGG	3 cut(s)	332, 491, 578
Bst4CI	ACNGT	2 cut(s)	321, 629
BstBAI	YACGTR	2 cut(s)	391, 1016
BstBI	TTCGAA	1 cut(s)	600
BstDEI	CTNAG	8 cut(s)	111, 286, 305, 518, 572, 740, 804, 957
BstF5I	GGATG	4 cut(s)	176, 264, 556, 733
BstFNI	CGCG	1 cut(s)	1037
BstKTI	GATC	5 cut(s)	558, 618, 976, 1027, 1117
BstMAI	GTCTC	2 cut(s)	244, 820
BstMBI	GATC	5 cut(s)	555, 615, 973, 1024, 1114
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 883
BstNI	CCWGG	3 cut(s)	332, 491, 578
BstNSI	RCATGY	3 cut(s)	185, 485, 992
BstSCI	CCNGG	3 cut(s)	330, 489, 576
BstSFI	CTRYAG	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	584
BstUI	CGCG	1 cut(s)	1037
BstV1I	GCAGC	8 cut(s)	22, 50, 119, 120, 288, 438, 886, 1062
BsuI	GTATCC	1 cut(s)	1028
BsuRI	GGCC	2 cut(s)	231, 335
BtsCI	GGATG	4 cut(s)	176, 264, 556, 733
BtsI	GCAGTG	2 cut(s)	61, 974
BtsIMutI	CAGTG	5 cut(s)	61, 294, 336, 634, 974
BveI	ACCTGC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	1091
Csp6I	GTAC	3 cut(s)	322, 505, 1033
CviAII	CATG	9 cut(s)	182, 482, 547, 679, 752, 767, 860, 989, 1022
CviQI	GTAC	3 cut(s)	322, 505, 1033
DdeI	CTNAG	8 cut(s)	111, 286, 305, 518, 572, 740, 804, 957
DpnI	GATC	5 cut(s)	557, 617, 975, 1026, 1116
DpnII	GATC	5 cut(s)	555, 615, 973, 1024, 1114
EaeI	YGGCCR	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	271
Eco130I	CCWWGG	2 cut(s)	832, 1118
Eco147I	AGGCCT	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	820
Eco47I	GGWCC	1 cut(s)	1091
Eco88I	CYCGRG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	1091
EcoRI	GAATTC	1 cut(s)	1124
EcoRII	CCWGG	3 cut(s)	330, 489, 576
EcoT14I	CCWWGG	2 cut(s)	832, 1118
EcoT22I	ATGCAT	1 cut(s)	176
ErhI	CCWWGG	2 cut(s)	832, 1118
FaeI	CATG	9 cut(s)	185, 485, 550, 682, 755, 770, 863, 992, 1025
FaqI	GGGAC	2 cut(s)	202, 977
FatI	CATG	9 cut(s)	181, 481, 546, 678, 751, 766, 859, 988, 1021
FauNDI	CATATG	1 cut(s)	689
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	9 cut(s)	36, 39, 105, 108, 134, 302, 452, 875, 1051
FokI	GGATG	4 cut(s)	183, 271, 563, 720
Fsp4HI	GCNGC	9 cut(s)	36, 39, 105, 108, 134, 302, 452, 875, 1051
FspBI	CTAG	2 cut(s)	227, 1129
GluI	GCNGC	9 cut(s)	36, 39, 105, 108, 134, 302, 452, 875, 1051
GsaI	CCCAGC	2 cut(s)	965, 1008
HaeIII	GGCC	2 cut(s)	231, 335
HapII	CCGG	1 cut(s)	253
Hin1II	CATG	9 cut(s)	185, 485, 550, 682, 755, 770, 863, 992, 1025
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	2 cut(s)	237, 856
HpaII	CCGG	1 cut(s)	253
HphI	GGTGA	2 cut(s)	646, 893
Hpy166II	GTNNAC	4 cut(s)	324, 394, 487, 704
Hpy188I	TCNGA	2 cut(s)	158, 807
Hpy188III	TCNNGA	1 cut(s)	87
Hpy8I	GTNNAC	4 cut(s)	324, 394, 487, 704
HpyAV	CCTTC	3 cut(s)	242, 928, 1081
HpyCH4III	ACNGT	2 cut(s)	321, 629
HpyCH4IV	ACGT	2 cut(s)	390, 1015
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 883
HpyF3I	CTNAG	8 cut(s)	111, 286, 305, 518, 572, 740, 804, 957
HpySE526I	ACGT	2 cut(s)	390, 1015
Hsp92II	CATG	9 cut(s)	185, 485, 550, 682, 755, 770, 863, 992, 1025
Kzo9I	GATC	5 cut(s)	555, 615, 973, 1024, 1114
LmnI	GCTCC	3 cut(s)	148, 314, 833
Lsp1109I	GCAGC	8 cut(s)	22, 50, 119, 120, 288, 438, 886, 1062
LweI	GCATC	3 cut(s)	161, 183, 1063
MaeI	CTAG	2 cut(s)	227, 1129
MaeII	ACGT	2 cut(s)	390, 1015
MaeIII	GTNAC	1 cut(s)	729
MalI	GATC	5 cut(s)	557, 617, 975, 1026, 1116
MboI	GATC	5 cut(s)	555, 615, 973, 1024, 1114
MboII	GAAGA	3 cut(s)	16, 614, 775
MfeI	CAATTG	2 cut(s)	275, 1082
MhlI	GDGCHC	2 cut(s)	319, 584
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	9 cut(s)	96, 264, 275, 385, 426, 495, 697, 1082, 1124
MluNI	TGGCCA	1 cut(s)	335
MlyI	GAGTC	1 cut(s)	246
MmeI	TCCRAC	3 cut(s)	136, 563, 593
MnlI	CCTC	9 cut(s)	139, 161, 286, 367, 625, 747, 813, 859, 987
Mox20I	TGGCCA	1 cut(s)	335
Mph1103I	ATGCAT	1 cut(s)	176
MroXI	GAANNNNTTC	1 cut(s)	782
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	3 cut(s)	465, 560, 761
MslI	CAYNNNNRTG	4 cut(s)	416, 551, 587, 1062
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	133
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	3 cut(s)	332, 491, 578
MunI	CAATTG	2 cut(s)	275, 1082
MvaI	CCWGG	3 cut(s)	332, 491, 578
MvnI	CGCG	1 cut(s)	1037
MwoI	GCNNNNNNNGC	2 cut(s)	228, 883
NdeI	CATATG	1 cut(s)	689
NdeII	GATC	5 cut(s)	555, 615, 973, 1024, 1114
NlaIII	CATG	9 cut(s)	185, 485, 550, 682, 755, 770, 863, 992, 1025
NlaIV	GGNNCC	1 cut(s)	1092
NmuCI	GTSAC	1 cut(s)	729
NsiI	ATGCAT	1 cut(s)	176
NspI	RCATGY	3 cut(s)	185, 485, 992
NspV	TTCGAA	1 cut(s)	600
OliI	CACNNNNGTG	1 cut(s)	587
PaeR7I	CTCGAG	1 cut(s)	87
PceI	AGGCCT	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	782
PfeI	GAWTC	1 cut(s)	856
PkrI	GCNGC	9 cut(s)	37, 40, 106, 109, 135, 303, 453, 876, 1052
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
Ppu21I	YACGTR	2 cut(s)	391, 1016
PpuMI	RGGWCCY	1 cut(s)	1091
PsiI	TTATAA	1 cut(s)	953
Psp5II	RGGWCCY	1 cut(s)	1091
Psp6I	CCWGG	3 cut(s)	330, 489, 576
PspFI	CCCAGC	2 cut(s)	961, 1004
PspGI	CCWGG	3 cut(s)	330, 489, 576
PspN4I	GGNNCC	1 cut(s)	1092
PspPI	GGNCC	1 cut(s)	1091
PspPPI	RGGWCCY	1 cut(s)	1091
PstI	CTGCAG	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	133
RsaI	GTAC	3 cut(s)	323, 506, 1034
RsaNI	GTAC	3 cut(s)	322, 505, 1033
RseI	CAYNNNNRTG	4 cut(s)	416, 551, 587, 1062
SaqAI	TTAA	3 cut(s)	465, 560, 761
SatI	GCNGC	9 cut(s)	36, 39, 105, 108, 134, 302, 452, 875, 1051
Sau3AI	GATC	5 cut(s)	555, 615, 973, 1024, 1114
Sau96I	GGNCC	1 cut(s)	1091
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	3 cut(s)	332, 491, 578
SduI	GDGCHC	2 cut(s)	319, 584
SfaNI	GCATC	3 cut(s)	161, 183, 1063
SfcI	CTRYAG	1 cut(s)	36
Sfr274I	CTCGAG	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	600
SgrAI	CRCCGGYG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	1091
SlaI	CTCGAG	1 cut(s)	87
SmiMI	CAYNNNNRTG	4 cut(s)	416, 551, 587, 1062
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	9 cut(s)	96, 264, 275, 385, 426, 495, 697, 1082, 1124
SseBI	AGGCCT	1 cut(s)	231
SsiI	CCGC	3 cut(s)	104, 256, 354
SspMI	CTAG	2 cut(s)	227, 1129
StuI	AGGCCT	1 cut(s)	231
StyD4I	CCNGG	3 cut(s)	330, 489, 576
StyI	CCWWGG	2 cut(s)	832, 1118
TaaI	ACNGT	2 cut(s)	321, 629
TaiI	ACGT	2 cut(s)	393, 1018
TaqI	TCGA	4 cut(s)	88, 166, 235, 600
TasI	AATT	9 cut(s)	96, 264, 275, 385, 426, 495, 697, 1082, 1124
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	856
Tru1I	TTAA	3 cut(s)	465, 560, 761
Tru9I	TTAA	3 cut(s)	465, 560, 761
TscAI	CASTG	5 cut(s)	61, 294, 343, 634, 974
TseFI	GTSAC	1 cut(s)	729
TseI	GCWGC	8 cut(s)	35, 38, 107, 133, 301, 451, 874, 1050
Tsp45I	GTSAC	1 cut(s)	729
TspDTI	ATGAA	8 cut(s)	17, 52, 296, 423, 707, 740, 848, 905
TspRI	CASTG	5 cut(s)	61, 294, 343, 634, 974
VpaK11BI	GGWCC	1 cut(s)	1091
XapI	RAATTY	1 cut(s)	1124
XceI	RCATGY	3 cut(s)	185, 485, 992
XhoI	CTCGAG	1 cut(s)	87
XmiI	GTMKAC	1 cut(s)	486
XmnI	GAANNNNTTC	1 cut(s)	782
XspI	CTAG	2 cut(s)	227, 1129
Zsp2I	ATGCAT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.