Rorug04G0199900

FR47-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006406
Physical Location & Seq
Reverse (-)
34771003 .. 34771587
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0199900.1

Sequence Viewer

Length: 585 bp
ATGGGGAAACCAGTCGCCGGAAAGTGCTCTCAAGAATTCTGGTTTGGTATTCTCATCTCCTCTATATTGTGTTTTCTGTTGCTTCGTTGTGATTATTCAACTAGTTTTCCGGGTGTCAACAATGAAGCCATTCTCTTTGTGAATACACAAATTCAACCAATTGGTATTCCCAAAAACAAGACCATTTCTGTTGCTAAGCAATCTACCACACATTCATGCTTTGGTAGTTACATATATATCCACGATGATCTTCCTGACAAATTCAGCAAGGACTTCCTCGACAATCTTACAACTCAAGGGAGTGACAAGCACAACATGTGTCCATACTTGGAGAATTTCGGTTTTGGTCCAGAAATAAACAACTCTGAAGGGGTTTTAGCCAACGAAAGTTGGTACTCCACAAACCAGTTCTCATTAGATGTCATATTCCACAACAAGATGAAGCAGTATGAGTGCTTGACAAACAACTCCACTCTGGCTTCGGCCATTTATATATATACCGATTTATGCTGGCCTCGAGGACAGTCTCCATTTGTGGGATCCGAACCTCACTGCAAGAGACTCTTTCGGTTTAGACTTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

194

Amino Acids

22.03

Weight (kDa)

6.5

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 75 - 165 2.5e-09 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 516
AclWI GGATC 2 cut(s) 534, 547
AcoI YGGCCR 1 cut(s) 483
AcsI RAATTY 4 cut(s) 35, 150, 260, 334
AcuI CTGAAG 1 cut(s) 387
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 2 cut(s) 17, 536
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 2 cut(s) 99, 155
AhlI ACTAGT 1 cut(s) 101
AjuI GAANNNNNNNTTGG 2 cut(s) 27, 59
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 2 cut(s) 531, 553
AlwI GGATC 2 cut(s) 534, 547
Ama87I CYCGRG 1 cut(s) 516
AoxI GGCC 2 cut(s) 483, 512
ApoI RAATTY 4 cut(s) 35, 150, 260, 334
Asp700I GAANNNNTTC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 347
AsuC2I CCSGG 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 516
AvaII GGWCC 1 cut(s) 347
BamHI GGATCC 1 cut(s) 539
Bbv12I GWGCWC 1 cut(s) 29
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 2 cut(s) 531, 553
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 1 cut(s) 102
BlpI GCTNAGC 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 111
Bme18I GGWCC 1 cut(s) 347
BmeT110I CYCGRG 1 cut(s) 516
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 541
BmrFI CCNGG 1 cut(s) 111
Bpu1102I GCTNAGC 1 cut(s) 195
BpuEI CTTGAG 2 cut(s) 15, 279
BpuMI CCSGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 536
Bse1I ACTGG 2 cut(s) 11, 406
BseLI CCNNNNNNNGG 2 cut(s) 17, 536
BseNI ACTGG 2 cut(s) 11, 406
BseRI GAGGAG 1 cut(s) 49
BshFI GGCC 2 cut(s) 485, 514
BsiHKAI GWGCWC 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 516
BsiSI CCGG 2 cut(s) 18, 110
BslI CCNNNNNNNGG 2 cut(s) 17, 536
BsmAI GTCTC 2 cut(s) 531, 553
BsnI GGCC 2 cut(s) 485, 514
BsoBI CYCGRG 1 cut(s) 516
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 2 cut(s) 247, 539
Bsp1720I GCTNAGC 1 cut(s) 195
BspANI GGCC 2 cut(s) 485, 514
BspLI GGNNCC 1 cut(s) 541
BspPI GGATC 2 cut(s) 534, 547
BsrI ACTGG 2 cut(s) 11, 406
BssMI GATC 2 cut(s) 247, 539
Bst4CI ACNGT 1 cut(s) 525
BstC8I GCNNGC 1 cut(s) 512
BstDEI CTNAG 1 cut(s) 195
BstKTI GATC 2 cut(s) 250, 542
BstMAI GTCTC 2 cut(s) 531, 553
BstMBI GATC 2 cut(s) 247, 539
BstNSI RCATGY 1 cut(s) 319
BstSCI CCNGG 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 539
BstYI RGATCY 1 cut(s) 539
BsuRI GGCC 2 cut(s) 485, 514
BtsI GCAGTG 1 cut(s) 550
BtsIMutI CAGTG 1 cut(s) 550
Cac8I GCNNGC 1 cut(s) 512
Cfr13I GGNCC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 394
CviAII CATG 2 cut(s) 216, 316
CviJI RGCY 5 cut(s) 128, 380, 479, 485, 514
CviKI_1 RGCY 5 cut(s) 128, 380, 479, 485, 514
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 1 cut(s) 195
DpnI GATC 2 cut(s) 249, 541
DpnII GATC 2 cut(s) 247, 539
EaeI YGGCCR 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 387
Eco88I CYCGRG 1 cut(s) 516
EcoRI GAATTC 1 cut(s) 35
FaeI CATG 2 cut(s) 219, 319
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FatI CATG 2 cut(s) 215, 315
FspBI CTAG 1 cut(s) 102
HaeIII GGCC 2 cut(s) 485, 514
HapII CCGG 2 cut(s) 18, 110
Hin1II CATG 2 cut(s) 219, 319
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 1 cut(s) 561
HpaII CCGG 2 cut(s) 18, 110
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 367, 544
Hpy188III TCNNGA 3 cut(s) 32, 254, 350
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 362
HpyCH4III ACNGT 1 cut(s) 525
HpyCH4V TGCA 1 cut(s) 555
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 2 cut(s) 219, 319
Kzo9I GATC 2 cut(s) 247, 539
LpnPI CCDG 9 cut(s) 24, 25, 31, 123, 267, 363, 419, 461, 496
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 2 cut(s) 227, 302
MalI GATC 2 cut(s) 249, 541
MboI GATC 2 cut(s) 247, 539
MboII GAAGA 1 cut(s) 242
MfeI CAATTG 1 cut(s) 159
MflI RGATCY 1 cut(s) 539
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 5 cut(s) 35, 150, 159, 260, 334
MlyI GAGTC 1 cut(s) 555
MnlI CCTC 5 cut(s) 70, 287, 512, 525, 558
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 1 cut(s) 583
MslI CAYNNNNRTG 1 cut(s) 214
MspI CCGG 2 cut(s) 18, 110
MspR9I CCNGG 1 cut(s) 111
MunI CAATTG 1 cut(s) 159
NciI CCSGG 1 cut(s) 111
NdeII GATC 2 cut(s) 247, 539
NlaIII CATG 2 cut(s) 219, 319
NlaIV GGNNCC 1 cut(s) 541
NmuCI GTSAC 1 cut(s) 302
NspI RCATGY 1 cut(s) 319
PaeR7I CTCGAG 1 cut(s) 516
PciI ACATGT 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 129
PleI GAGTC 1 cut(s) 555
PpsI GAGTC 1 cut(s) 555
PscI ACATGT 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 541
PspPI GGNCC 1 cut(s) 347
PspXI VCTCGAGB 1 cut(s) 516
PsuI RGATCY 1 cut(s) 539
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
RseI CAYNNNNRTG 1 cut(s) 214
SaqAI TTAA 1 cut(s) 583
Sau3AI GATC 2 cut(s) 247, 539
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 1 cut(s) 555
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 1 cut(s) 29
SetI ASST 1 cut(s) 550
Sfr274I CTCGAG 1 cut(s) 516
SinI GGWCC 1 cut(s) 347
SlaI CTCGAG 1 cut(s) 516
SmiMI CAYNNNNRTG 1 cut(s) 214
SmlI CTYRAG 3 cut(s) 30, 294, 516
SmoI CTYRAG 3 cut(s) 30, 294, 516
SpeI ACTAGT 1 cut(s) 101
Sse9I AATT 5 cut(s) 35, 150, 159, 260, 334
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 525
TaqI TCGA 2 cut(s) 279, 517
TasI AATT 5 cut(s) 35, 150, 159, 260, 334
Tru1I TTAA 1 cut(s) 583
Tru9I TTAA 1 cut(s) 583
TscAI CASTG 1 cut(s) 557
TseFI GTSAC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 3 cut(s) 138, 204, 455
TspRI CASTG 1 cut(s) 557
VpaK11BI GGWCC 1 cut(s) 347
XapI RAATTY 4 cut(s) 35, 150, 260, 334
XceI RCATGY 1 cut(s) 319
XhoI CTCGAG 1 cut(s) 516
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.