pycom13g13210

FR47-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0006406
Physical Location & Seq
Forward (+)
9348799 .. 9349772
974 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g13210.1

Sequence Viewer

Length: 555 bp
ATGGTTGAAATTGCAGATCACACCAAGGTTCTTATAAGGGAATTCAGTGAAGACACAGATATTGAAGTGGTGGGGAAACTAGAGAGGGACTGTGAGATAGAGTCTAAAAAGGGCGTCTCCATTTTCACTAGCATGATGGGTGATCCCTTTTGTAGGATTAGGTTCTACCCCCTTCATGTTATGCTGCATAACAAAAAACTGTTTTACAAATCATCCGTCACTAGACAACTTATAACTTTGTATGTTTTTCCGTTTAGGCGGATGGGAATCGGGTTGAAACTCATGAAGTCGGTGGAGGAGTGGTTGCTGAGGAAGGGAGCACAGTACACATTCTTGGCAACTGAAGAGAGCAACACCGCGTCCACCAATCTCTTCACTTACAAATGCAATTACAGGAAGCTCAGCTCGCTGATCGATATTTGTTCAGCCAGTTTGTTCTGCTGTAGAGGATCCGATGCCTCGAGATATAAAAATAGAGAAGCTACATGTCGACGAGGCAATTTTCTTGTACAAAAGCAGGCTAAGGAGCAAAGACATATATCCAACAGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

185

Amino Acids

21.51

Weight (kDa)

9.43

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 84 - 126 2.6e-07 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 35, 233
AccI GTMKAC 1 cut(s) 490
AccII CGCG 1 cut(s) 359
AciI CCGC 2 cut(s) 259, 357
AclWI GGATC 3 cut(s) 137, 444, 457
AcsI RAATTY 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 2 cut(s) 326, 510
AfiI CCNNNNNNNGG 1 cut(s) 153
AflIII ACRYGT 1 cut(s) 485
AgsI TTSAA 3 cut(s) 8, 65, 277
AluBI AGCT 3 cut(s) 400, 405, 482
AluI AGCT 3 cut(s) 400, 405, 482
Alw21I GWGCWC 1 cut(s) 322
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 3 cut(s) 137, 444, 457
Ama87I CYCGRG 1 cut(s) 460
ApeKI GCWGC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 41
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
AsuHPI GGTGA 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 460
BamHI GGATCC 1 cut(s) 449
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 322
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 1 cut(s) 171
BccI CCATC 2 cut(s) 130, 256
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 3 cut(s) 80, 129, 222
BfmI CTRYAG 1 cut(s) 442
BisI GCNGC 1 cut(s) 185
BlpI GCTNAGC 1 cut(s) 401
BlsI GCNGC 1 cut(s) 186
BmeT110I CYCGRG 1 cut(s) 460
BmiI GGNNCC 1 cut(s) 451
BmsI GCATC 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 57
Bpu10I CCTNAGC 2 cut(s) 308, 522
Bpu1102I GCTNAGC 1 cut(s) 401
Bsa29I ATCGAT 1 cut(s) 414
BsaBI GATNNNNATC 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 429
Bse8I GATNNNNATC 1 cut(s) 266
BseCI ATCGAT 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 212, 267
BseJI GATNNNNATC 1 cut(s) 266
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMII CTCAG 2 cut(s) 299, 415
BseNI ACTGG 1 cut(s) 429
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 359
BshVI ATCGAT 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 322
BsiHKCI CYCGRG 1 cut(s) 460
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 121
BsmBI CGTCTC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 101
BsoBI CYCGRG 1 cut(s) 460
Bsp1286I GDGCHC 1 cut(s) 322
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 4 cut(s) 16, 142, 411, 449
Bsp1720I GCTNAGC 1 cut(s) 401
BspACI CCGC 2 cut(s) 259, 357
BspCNI CTCAG 2 cut(s) 300, 414
BspDI ATCGAT 1 cut(s) 414
BspFNI CGCG 1 cut(s) 359
BspHI TCATGA 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 451
BspPI GGATC 3 cut(s) 137, 444, 457
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 1 cut(s) 429
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 4 cut(s) 16, 142, 411, 449
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 24
Bst4CI ACNGT 3 cut(s) 92, 201, 324
Bst6I CTCTTC 2 cut(s) 339, 377
BstACI GRCGYC 1 cut(s) 114
BstAUI TGTACA 1 cut(s) 508
BstC8I GCNNGC 2 cut(s) 407, 519
BstDEI CTNAG 3 cut(s) 308, 401, 522
BstENI CCTNNNNNAGG 1 cut(s) 151
BstF5I GGATG 2 cut(s) 212, 267
BstFNI CGCG 1 cut(s) 359
BstKTI GATC 4 cut(s) 19, 145, 414, 452
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 4 cut(s) 16, 142, 411, 449
BstMWI GCNNNNNNNGC 1 cut(s) 406
BstNSI RCATGY 1 cut(s) 489
BstSFI CTRYAG 1 cut(s) 442
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 1 cut(s) 171
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 449
BstYI RGATCY 1 cut(s) 449
Bsu15I ATCGAT 1 cut(s) 414
BsuTUI ATCGAT 1 cut(s) 414
BtsCI GGATG 2 cut(s) 212, 267
BtsIMutI CAGTG 1 cut(s) 52
Cac8I GCNNGC 2 cut(s) 407, 519
CciI TCATGA 1 cut(s) 282
ClaI ATCGAT 1 cut(s) 414
CseI GACGC 2 cut(s) 103, 348
Csp6I GTAC 2 cut(s) 325, 509
CviAII CATG 4 cut(s) 133, 176, 283, 486
CviJI RGCY 5 cut(s) 400, 405, 428, 482, 521
CviKI_1 RGCY 5 cut(s) 400, 405, 428, 482, 521
CviQI GTAC 2 cut(s) 325, 509
DdeI CTNAG 3 cut(s) 308, 401, 522
DpnI GATC 4 cut(s) 18, 144, 413, 451
DpnII GATC 4 cut(s) 16, 142, 411, 449
Eam1104I CTCTTC 2 cut(s) 339, 377
EarI CTCTTC 2 cut(s) 339, 377
EciI GGCGGA 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 363
Eco88I CYCGRG 1 cut(s) 460
EcoNI CCTNNNNNAGG 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 4 cut(s) 136, 179, 286, 489
FaqI GGGAC 1 cut(s) 101
FatI CATG 4 cut(s) 132, 175, 282, 485
FblI GTMKAC 1 cut(s) 490
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 2 cut(s) 199, 274
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 3 cut(s) 80, 129, 222
GluI GCNGC 1 cut(s) 185
HgaI GACGC 2 cut(s) 103, 348
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 4 cut(s) 136, 179, 286, 489
HincII GTYRAC 1 cut(s) 491
HindII GTYRAC 1 cut(s) 491
HinfI GANTC 2 cut(s) 101, 267
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 3 cut(s) 327, 363, 491
Hpy188I TCNGA 1 cut(s) 454
Hpy188III TCNNGA 2 cut(s) 283, 462
Hpy8I GTNNAC 3 cut(s) 327, 363, 491
Hpy99I CGWCG 1 cut(s) 495
HpyAV CCTTC 2 cut(s) 182, 307
HpyCH4III ACNGT 3 cut(s) 92, 201, 324
HpyCH4V TGCA 3 cut(s) 14, 187, 387
HpyF10VI GCNNNNNNNGC 1 cut(s) 406
HpyF3I CTNAG 3 cut(s) 308, 401, 522
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 4 cut(s) 136, 179, 286, 489
Kzo9I GATC 4 cut(s) 16, 142, 411, 449
LmnI GCTCC 2 cut(s) 317, 526
LpnPI CCDG 3 cut(s) 379, 442, 503
Lsp1109I GCAGC 1 cut(s) 171
LweI GCATC 1 cut(s) 445
MaeI CTAG 3 cut(s) 80, 129, 222
MaeIII GTNAC 1 cut(s) 217
MalI GATC 4 cut(s) 18, 144, 413, 451
MboI GATC 4 cut(s) 16, 142, 411, 449
MboII GAAGA 3 cut(s) 62, 356, 364
MflI RGATCY 1 cut(s) 449
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 4 cut(s) 9, 41, 388, 499
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 6 cut(s) 78, 289, 303, 440, 469, 488
MslI CAYNNNNRTG 1 cut(s) 131
MvnI CGCG 1 cut(s) 359
MwoI GCNNNNNNNGC 1 cut(s) 406
NdeII GATC 4 cut(s) 16, 142, 411, 449
NlaIII CATG 4 cut(s) 136, 179, 286, 489
NlaIV GGNNCC 1 cut(s) 451
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 1 cut(s) 489
PaeR7I CTCGAG 1 cut(s) 460
PagI TCATGA 1 cut(s) 282
PciI ACATGT 1 cut(s) 485
PfeI GAWTC 1 cut(s) 267
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PscI ACATGT 1 cut(s) 485
PsiI TTATAA 2 cut(s) 35, 233
PspN4I GGNNCC 1 cut(s) 451
PsuI RGATCY 1 cut(s) 449
RsaI GTAC 2 cut(s) 326, 510
RsaNI GTAC 2 cut(s) 325, 509
RseI CAYNNNNRTG 1 cut(s) 131
SalI GTCGAC 1 cut(s) 489
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 4 cut(s) 16, 142, 411, 449
SchI GAGTC 1 cut(s) 110
SduI GDGCHC 1 cut(s) 322
SetI ASST 5 cut(s) 30, 164, 402, 407, 484
SfaNI GCATC 1 cut(s) 445
SfcI CTRYAG 1 cut(s) 442
Sfr274I CTCGAG 1 cut(s) 460
SlaI CTCGAG 1 cut(s) 460
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
Sse9I AATT 4 cut(s) 9, 41, 388, 499
SsiI CCGC 2 cut(s) 259, 357
SspMI CTAG 3 cut(s) 80, 129, 222
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 3 cut(s) 92, 201, 324
TaqI TCGA 3 cut(s) 414, 461, 490
TasI AATT 4 cut(s) 9, 41, 388, 499
TatI WGTACW 2 cut(s) 324, 508
TfiI GAWTC 1 cut(s) 267
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 2 cut(s) 164, 299
TspGWI ACGGA 2 cut(s) 205, 240
TspRI CASTG 1 cut(s) 52
XagI CCTNNNNNAGG 1 cut(s) 151
XapI RAATTY 1 cut(s) 41
XceI RCATGY 1 cut(s) 489
XhoI CTCGAG 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 490
XspI CTAG 3 cut(s) 80, 129, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.