Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006406

Physical Location & Seq

Genomic Coordinates Reverse (-)

43583840 .. 43587241

Gene Structure 3402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG263000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGCTGTTCCATTTTCTGAAGTACACACGCTATGTTCCAATTTTGGAAGCTCCAGGAGTTCCGGGTCCAGCTCTCACTTCCATAGAAGCCCAAGAACAATTATGTACTCAAAATAAGCTCATTCACAAATTGAACATAACCCTCCAGAATTCTCTCTGGCTTGTGTTCATACTCATTATCTTGTTGAAATCTCGAGTAATAATTCCTGCGGCAGCTAAGCACAAGCAGGTAGCACAGCTGCTTGAAAATGAGGAGCTTGTCGGAGTGGTTCGAGGATGCATCAAGCATGTGGGGACTGGTTTTGGGGGAGTATATGTGATGGGTTGCATACTAGGCCTTCGAGTCTCTCCCACACACCGGCGGATGGGAATTGGATTTCAATTGATGAACTCAGTGGAGGAGTGGCTGCTGAGAAAAGGAGCACAGTACACATTCCTGGCCACTGAAAGGAACAACACCGCCTCTACAAATCTATTCACTTCCAAATGCAATTACGTGAACATCAGCTCACTAATCATATTTGTGCAACCAATTTGTTCATCTGCAAAACATCTGCTGCCACAAAGTATTAAAATAGAGAAGTTGCATGTAGACCAGGCAATTTCCCTGTACGAAAACAAGCTAAGAAGCAAAGACATATCTCCAACAGACATGGATGTGATCTTAAAGGAAAAGCTCAGCCTGGGCACTTGGGTGTGTTATTTCGAAGAACAGGGTTGGATCAACTTGGACAGTGAGGGAAACAACAAGGGAACAATCACCAAAACGCAAAGCTCTTGGGTCATGTTTAGCATATGGAATAATTGTGAACCTTACAAGCTTCATATAAGAAAGTCACATCCTCTAAGGTATTTTCATGCTACCTTAAACCATGCAAGAGAGAAAATCTTCTCCTGTTTGAAAATGCCTCAGAGTAAGGTCTCGGTGCAAAGCTCCCTTGGGTTTCTCTTTCTCTATGGGATTCATGGGGAGGGAGAGCAGCTTGGTGAGCTTATGAAATCTGTTTGGAACTTCGCATTAGGATTGGGGCAGAATGTGAAGGACAGCAAGTTGATTATAACTGAGCTGGGGCAGTGTGATCCTCTCATAAAGCATGTCCCAGACAATCCCAGCATTTCACGTATCCATGATCTCTGGTACGCGAAAAGTTTGAGCAGCCACCACCCTGATGACCAAGATGCTCTGCAATTGAAGGGTCCTTTGGGAAATGTGTTTGTTGATCCAAGGGAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

411

Amino Acids

46.45

Weight (kDa)

8.91

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	80 - 164	4.2e-13	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	82 - 161	5.9e-06	Acetyltransferase (GNAT) domain
FR47	PF08445	105 - 160	3.8e-06	FR47-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19610 FvH4_4g19610 FvH4_4g19610 FvH4_4g19610 FvH4_4g19610
malus_domestica	MD13G1155300.v1.1
prunus_persica	Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1
pyrus_communis	pycom13g13210 pycom13g13220
rosa_chinensis	RchiOBHm_Chr4g0424871
rosa_laevigata	RLG00000007413
rosa_multiflora	Rmu_sc0006754.1_g000005
rosa_roxburghii	Rroxscaffold_5G00367090
rosa_rugosa	Rorug03G0364000.1 Rorug04G0199900 Rorug04G0200000 Rorug04G0200100 Rorug04G0200100 Rorug04G0200100
rosa_samantha	Rh4AG257600 Rh4BG263000 Rh4CG273900 Rh4DG258700
rosa_wichuraiana	Rw4G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1058
Acc36I	ACCTGC	1 cut(s)	217
AccI	GTMKAC	1 cut(s)	591
AccII	CGCG	1 cut(s)	1142
AciI	CCGC	3 cut(s)	209, 361, 459
AclWI	GGATC	3 cut(s)	728, 1073, 1214
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	2 cut(s)	148, 1229
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	5 cut(s)	23, 106, 428, 611, 1139
AfiI	CCNNNNNNNGG	3 cut(s)	357, 364, 447
AgsI	TTSAA	6 cut(s)	133, 187, 245, 380, 901, 1192
AjnI	CCWGG	4 cut(s)	52, 435, 594, 681
AjuI	GAANNNNNNNTTGG	2 cut(s)	1184, 1216
AleI	CACNNNNGTG	1 cut(s)	692
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	2 cut(s)	349, 925
AlwI	GGATC	3 cut(s)	728, 1073, 1214
Ama87I	CYCGRG	1 cut(s)	192
AoxI	GGCC	2 cut(s)	334, 438
ApeKI	GCWGC	6 cut(s)	212, 238, 406, 556, 979, 1155
ApoI	RAATTY	2 cut(s)	148, 1229
Asp700I	GAANNNNTTC	1 cut(s)	887
AspS9I	GGNCC	2 cut(s)	65, 1196
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	2 cut(s)	751, 998
AsuII	TTCGAA	1 cut(s)	705
AvaI	CYCGRG	1 cut(s)	192
AvaII	GGWCC	2 cut(s)	65, 1196
BaeGI	GKGCMC	1 cut(s)	689
BalI	TGGCCA	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	6 cut(s)	224, 225, 393, 543, 991, 1167
BccI	CCATC	2 cut(s)	313, 358
BciT130I	CCWGG	4 cut(s)	54, 437, 596, 683
BciVI	GTATCC	1 cut(s)	1133
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	349, 925
BfaI	CTAG	2 cut(s)	332, 1234
BfuAI	ACCTGC	1 cut(s)	217
BfuI	GTATCC	1 cut(s)	1133
BisI	GCNGC	7 cut(s)	210, 213, 239, 407, 557, 980, 1156
BlpI	GCTNAGC	2 cut(s)	216, 677
BlsI	GCNGC	7 cut(s)	211, 214, 240, 408, 558, 981, 1157
Bme1390I	CCNGG	5 cut(s)	54, 63, 437, 596, 683
Bme18I	GGWCC	2 cut(s)	65, 1196
BmeT110I	CYCGRG	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	65, 1196
BmiI	GGNNCC	2 cut(s)	66, 1197
BmrFI	CCNGG	5 cut(s)	54, 63, 437, 596, 683
BmsI	GCATC	3 cut(s)	266, 288, 1168
BpmI	CTGGAG	2 cut(s)	36, 128
Bpu1102I	GCTNAGC	2 cut(s)	216, 677
Bpu14I	TTCGAA	1 cut(s)	705
BpuMI	CCSGG	1 cut(s)	63
BsaAI	YACGTR	2 cut(s)	496, 1121
BsaI	GGTCTC	1 cut(s)	925
BsaJI	CCNNGG	3 cut(s)	682, 937, 1223
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	3 cut(s)	357, 364, 447
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	4 cut(s)	54, 437, 596, 683
BseDI	CCNNGG	3 cut(s)	682, 937, 1223
BseGI	GGATG	4 cut(s)	281, 369, 661, 838
BseLI	CCNNNNNNNGG	3 cut(s)	357, 364, 447
BseMII	CTCAG	5 cut(s)	401, 405, 691, 923, 1053
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	2 cut(s)	266, 413
BseSI	GKGCMC	1 cut(s)	689
BseXI	GCAGC	6 cut(s)	224, 225, 393, 543, 991, 1167
BseYI	CCCAGC	2 cut(s)	1066, 1109
Bsh1236I	CGCG	1 cut(s)	1142
BshFI	GGCC	2 cut(s)	336, 440
BsiHKAI	GWGCWC	1 cut(s)	424
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	62, 358
BslFI	GGGAC	2 cut(s)	307, 1082
BslI	CCNNNNNNNGG	3 cut(s)	357, 364, 447
BsmAI	GTCTC	2 cut(s)	349, 925
BsmFI	GGGAC	2 cut(s)	307, 1082
BsnI	GGCC	2 cut(s)	336, 440
Bso31I	GGTCTC	1 cut(s)	925
BsoBI	CYCGRG	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	705
Bsp1286I	GDGCHC	2 cut(s)	424, 689
Bsp143I	GATC	5 cut(s)	660, 720, 1078, 1129, 1219
Bsp1720I	GCTNAGC	2 cut(s)	216, 677
BspACI	CCGC	3 cut(s)	209, 361, 459
BspANI	GGCC	2 cut(s)	336, 440
BspCNI	CTCAG	5 cut(s)	402, 404, 690, 922, 1054
BspFNI	CGCG	1 cut(s)	1142
BspLI	GGNNCC	2 cut(s)	66, 1197
BspMI	ACCTGC	1 cut(s)	217
BspPI	GGATC	3 cut(s)	728, 1073, 1214
BspT104I	TTCGAA	1 cut(s)	705
BspTNI	GGTCTC	1 cut(s)	925
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	3 cut(s)	682, 937, 1223
BssMI	GATC	5 cut(s)	660, 720, 1078, 1129, 1219
BssT1I	CCWWGG	2 cut(s)	937, 1223
Bst2UI	CCWGG	4 cut(s)	54, 437, 596, 683
Bst4CI	ACNGT	2 cut(s)	426, 734
BstBAI	YACGTR	2 cut(s)	496, 1121
BstBI	TTCGAA	1 cut(s)	705
BstDEI	CTNAG	8 cut(s)	216, 391, 410, 623, 677, 845, 909, 1062
BstF5I	GGATG	4 cut(s)	281, 369, 661, 838
BstFNI	CGCG	1 cut(s)	1142
BstKTI	GATC	5 cut(s)	663, 723, 1081, 1132, 1222
BstMAI	GTCTC	2 cut(s)	349, 925
BstMBI	GATC	5 cut(s)	660, 720, 1078, 1129, 1219
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 988
BstNI	CCWGG	4 cut(s)	54, 437, 596, 683
BstNSI	RCATGY	3 cut(s)	290, 590, 1097
BstSCI	CCNGG	5 cut(s)	52, 61, 435, 594, 681
BstSLI	GKGCMC	1 cut(s)	689
BstUI	CGCG	1 cut(s)	1142
BstV1I	GCAGC	6 cut(s)	224, 225, 393, 543, 991, 1167
BsuI	GTATCC	1 cut(s)	1133
BsuRI	GGCC	2 cut(s)	336, 440
BtsCI	GGATG	4 cut(s)	281, 369, 661, 838
BtsI	GCAGTG	1 cut(s)	1079
BtsIMutI	CAGTG	4 cut(s)	399, 441, 739, 1079
BveI	ACCTGC	1 cut(s)	217
Cfr10I	RCCGGY	1 cut(s)	357
Cfr13I	GGNCC	2 cut(s)	65, 1196
Csp6I	GTAC	5 cut(s)	22, 105, 427, 610, 1138
CviAII	CATG	9 cut(s)	287, 587, 652, 784, 857, 872, 965, 1094, 1127
CviQI	GTAC	5 cut(s)	22, 105, 427, 610, 1138
DdeI	CTNAG	8 cut(s)	216, 391, 410, 623, 677, 845, 909, 1062
DpnI	GATC	5 cut(s)	662, 722, 1080, 1131, 1221
DpnII	GATC	5 cut(s)	660, 720, 1078, 1129, 1219
EaeI	YGGCCR	1 cut(s)	438
EciI	GGCGGA	1 cut(s)	376
Eco130I	CCWWGG	2 cut(s)	937, 1223
Eco147I	AGGCCT	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	925
Eco47I	GGWCC	2 cut(s)	65, 1196
Eco57I	CTGAAG	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	192
EcoO109I	RGGNCCY	1 cut(s)	1196
EcoRI	GAATTC	2 cut(s)	148, 1229
EcoRII	CCWGG	4 cut(s)	52, 435, 594, 681
EcoT14I	CCWWGG	2 cut(s)	937, 1223
EcoT22I	ATGCAT	1 cut(s)	281
ErhI	CCWWGG	2 cut(s)	937, 1223
FaeI	CATG	9 cut(s)	290, 590, 655, 787, 860, 875, 968, 1097, 1130
FaqI	GGGAC	2 cut(s)	307, 1082
FatI	CATG	9 cut(s)	286, 586, 651, 783, 856, 871, 964, 1093, 1126
FauNDI	CATATG	1 cut(s)	794
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	7 cut(s)	210, 213, 239, 407, 557, 980, 1156
FokI	GGATG	4 cut(s)	288, 376, 668, 825
Fsp4HI	GCNGC	7 cut(s)	210, 213, 239, 407, 557, 980, 1156
FspBI	CTAG	2 cut(s)	332, 1234
GluI	GCNGC	7 cut(s)	210, 213, 239, 407, 557, 980, 1156
GsaI	CCCAGC	2 cut(s)	1070, 1113
GsuI	CTGGAG	2 cut(s)	36, 128
HaeIII	GGCC	2 cut(s)	336, 440
HapII	CCGG	2 cut(s)	62, 358
Hin1II	CATG	9 cut(s)	290, 590, 655, 787, 860, 875, 968, 1097, 1130
HindIII	AAGCTT	1 cut(s)	818
HinfI	GANTC	2 cut(s)	342, 961
HpaII	CCGG	2 cut(s)	62, 358
HphI	GGTGA	2 cut(s)	751, 998
Hpy166II	GTNNAC	5 cut(s)	24, 429, 499, 592, 809
Hpy188I	TCNGA	3 cut(s)	18, 263, 912
Hpy188III	TCNNGA	2 cut(s)	145, 192
Hpy8I	GTNNAC	5 cut(s)	24, 429, 499, 592, 809
HpyAV	CCTTC	3 cut(s)	347, 1033, 1186
HpyCH4III	ACNGT	2 cut(s)	426, 734
HpyCH4IV	ACGT	2 cut(s)	495, 1120
HpyCH4V	TGCA	9 cut(s)	279, 327, 489, 526, 545, 586, 875, 928, 1186
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 988
HpyF3I	CTNAG	8 cut(s)	216, 391, 410, 623, 677, 845, 909, 1062
HpySE526I	ACGT	2 cut(s)	495, 1120
Hsp92II	CATG	9 cut(s)	290, 590, 655, 787, 860, 875, 968, 1097, 1130
Kzo9I	GATC	5 cut(s)	660, 720, 1078, 1129, 1219
LmnI	GCTCC	4 cut(s)	55, 253, 419, 938
Lsp1109I	GCAGC	6 cut(s)	224, 225, 393, 543, 991, 1167
LweI	GCATC	3 cut(s)	266, 288, 1168
MaeI	CTAG	2 cut(s)	332, 1234
MaeII	ACGT	2 cut(s)	495, 1120
MaeIII	GTNAC	1 cut(s)	834
MalI	GATC	5 cut(s)	662, 722, 1080, 1131, 1221
MboI	GATC	5 cut(s)	660, 720, 1078, 1129, 1219
MboII	GAAGA	2 cut(s)	719, 880
MfeI	CAATTG	2 cut(s)	380, 1187
MhlI	GDGCHC	2 cut(s)	424, 689
MlsI	TGGCCA	1 cut(s)	440
MluNI	TGGCCA	1 cut(s)	440
MlyI	GAGTC	1 cut(s)	351
MmeI	TCCRAC	3 cut(s)	241, 668, 698
Mox20I	TGGCCA	1 cut(s)	440
Mph1103I	ATGCAT	1 cut(s)	281
MroXI	GAANNNNTTC	1 cut(s)	887
MscI	TGGCCA	1 cut(s)	440
MseI	TTAA	3 cut(s)	570, 665, 866
MslI	CAYNNNNRTG	4 cut(s)	521, 656, 692, 1167
Msp20I	TGGCCA	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	2 cut(s)	62, 358
MspR9I	CCNGG	5 cut(s)	54, 63, 437, 596, 683
MunI	CAATTG	2 cut(s)	380, 1187
MvaI	CCWGG	4 cut(s)	54, 437, 596, 683
MvnI	CGCG	1 cut(s)	1142
MwoI	GCNNNNNNNGC	2 cut(s)	333, 988
NciI	CCSGG	1 cut(s)	63
NdeI	CATATG	1 cut(s)	794
NdeII	GATC	5 cut(s)	660, 720, 1078, 1129, 1219
NlaIII	CATG	9 cut(s)	290, 590, 655, 787, 860, 875, 968, 1097, 1130
NlaIV	GGNNCC	2 cut(s)	66, 1197
NmuCI	GTSAC	1 cut(s)	834
NsiI	ATGCAT	1 cut(s)	281
NspI	RCATGY	3 cut(s)	290, 590, 1097
NspV	TTCGAA	1 cut(s)	705
OliI	CACNNNNGTG	1 cut(s)	692
PaeR7I	CTCGAG	1 cut(s)	192
PceI	AGGCCT	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	887
PfeI	GAWTC	1 cut(s)	961
PfoI	TCCNGGA	1 cut(s)	52
PkrI	GCNGC	7 cut(s)	211, 214, 240, 408, 558, 981, 1157
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Ppu21I	YACGTR	2 cut(s)	496, 1121
PpuMI	RGGWCCY	1 cut(s)	1196
PsiI	TTATAA	1 cut(s)	1058
Psp5II	RGGWCCY	1 cut(s)	1196
Psp6I	CCWGG	4 cut(s)	52, 435, 594, 681
PspFI	CCCAGC	2 cut(s)	1066, 1109
PspGI	CCWGG	4 cut(s)	52, 435, 594, 681
PspN4I	GGNNCC	2 cut(s)	66, 1197
PspPI	GGNCC	2 cut(s)	65, 1196
PspPPI	RGGWCCY	1 cut(s)	1196
PvuII	CAGCTG	1 cut(s)	238
RsaI	GTAC	5 cut(s)	23, 106, 428, 611, 1139
RsaNI	GTAC	5 cut(s)	22, 105, 427, 610, 1138
RseI	CAYNNNNRTG	4 cut(s)	521, 656, 692, 1167
SaqAI	TTAA	3 cut(s)	570, 665, 866
SatI	GCNGC	7 cut(s)	210, 213, 239, 407, 557, 980, 1156
Sau3AI	GATC	5 cut(s)	660, 720, 1078, 1129, 1219
Sau96I	GGNCC	2 cut(s)	65, 1196
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	5 cut(s)	54, 63, 437, 596, 683
SduI	GDGCHC	2 cut(s)	424, 689
SfaNI	GCATC	3 cut(s)	266, 288, 1168
Sfr274I	CTCGAG	1 cut(s)	192
SfuI	TTCGAA	1 cut(s)	705
SgrAI	CRCCGGYG	1 cut(s)	357
SinI	GGWCC	2 cut(s)	65, 1196
SlaI	CTCGAG	1 cut(s)	192
SmiMI	CAYNNNNRTG	4 cut(s)	521, 656, 692, 1167
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
SseBI	AGGCCT	1 cut(s)	336
SsiI	CCGC	3 cut(s)	209, 361, 459
SspMI	CTAG	2 cut(s)	332, 1234
StuI	AGGCCT	1 cut(s)	336
StyD4I	CCNGG	5 cut(s)	52, 61, 435, 594, 681
StyI	CCWWGG	2 cut(s)	937, 1223
TaaI	ACNGT	2 cut(s)	426, 734
TaiI	ACGT	2 cut(s)	498, 1123
TaqI	TCGA	4 cut(s)	193, 271, 340, 705
TatI	WGTACW	3 cut(s)	21, 104, 426
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	961
Tru1I	TTAA	3 cut(s)	570, 665, 866
Tru9I	TTAA	3 cut(s)	570, 665, 866
TscAI	CASTG	4 cut(s)	399, 448, 739, 1079
TseFI	GTSAC	1 cut(s)	834
TseI	GCWGC	6 cut(s)	212, 238, 406, 556, 979, 1155
Tsp45I	GTSAC	1 cut(s)	834
TspDTI	ATGAA	7 cut(s)	157, 401, 528, 812, 845, 953, 1010
TspRI	CASTG	4 cut(s)	399, 448, 739, 1079
VpaK11BI	GGWCC	2 cut(s)	65, 1196
XapI	RAATTY	2 cut(s)	148, 1229
XceI	RCATGY	3 cut(s)	290, 590, 1097
XhoI	CTCGAG	1 cut(s)	192
XmiI	GTMKAC	1 cut(s)	591
XmnI	GAANNNNTTC	1 cut(s)	887
XspI	CTAG	2 cut(s)	332, 1234
Zsp2I	ATGCAT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.