Rorug04G0200000

FR47-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006406
Physical Location & Seq
Reverse (-)
34774012 .. 34775499
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0200000.1

Sequence Viewer

Length: 1488 bp
ATGGGGAAACCACTTGCTGGAAAGTGCTCTCCAGAAGTCTGGTTAGGCATTCTCTTCTCTTTTATTTTGTGCTTTTTTCTTCTGCTTCCCTTTGATTACCCAAGTAATTATTTGGGGGTAAATAATGGTGTCAGTCTCTTTGAAAACAAAGAAACACACCCAATTGGTATTGTAAAGAATCAGTCGATTTCTGTTATCAACCAATCTACCACAGATTCATGCTCTGGTCGTTACATTTATATCCATGATGATCTTCCTGCCAAATTCAACTATGATCTGATCAACAACTGTGAGTCTCTTACTGGAAGTAACATGCCCAACATGTGTCCACACATAAAGAATTTCGGTTTTGGTCTGGAAATTAACAACTCTGAAGGGGTTTTAACCAACAAGAGATGGTTCTCCACTAACCAGTTCTCATTAGAACTCATATTTCACAGCAAGATGAAGCACTATGTGTGCTTGACAAACAACTCCGCTCAGGCTTCAGCTATTTATATACCAATCTATCCTGGCCTTGAGGAGAGTCAACATCTGTGGGATCCTAACCTCACAGCCAGAGACTCTTTCGGTGAAGAGTTTTCCAAGTGGGTTTCGAGTAGAGTCGAATGGAAGAAAATGTGGGGGAGAGACCATTTCTTTGTTTCAGGGAGGGTTGCTTTCGACTATAGGAGGAAAACAGACAACATTTCTGACTGGGGTAGTACACTCAGGGTCACGCCAGAGTCTAACAACATGACTATGTTGACAATTGAAGGAAGCTCACGGACAAATGATATTGCTATACCATACCCCACTGGCTTTCATCCTGCAAAGGACAGTGAGGTGTTTCAGTGGCAGAACAGAGTGAGGGGGCAAGAAAGGCCTTACTTGTTCACTTTTGTTGGTGGACCAAGGCCTGACCAGCCAAACTCTATCCGGGGCAAACTCTTTGATCAGTGTCAAGCCTCAAGTACTTGCAAGGTGCTAAATTGCCATTCAAGTGGGATCAATTGTGAAGAAACGGTTACTGTTATGAGGGTGTTTCAGAAATCAGTTTATTGCTTGCACCCTACAGGGGATACATTCACCAGAAAATCAGCTTTCGACTCTATTCTGGCTGGTTGCATTCCTGTTTTCTTTCATCCGGCTAGCGCTTATAACCAGTATTTATGGTACTTGCCTAAGAATTACACCAAGTATTCTGTATTTATTCCAGTGAGGAAAGCACAAGATTTGAAAGACGGTAGCATTGAGAAAATCTTGCTTGGAATTTCAAAAGACATGGAATTCGCCATGAGAGAGCAAGTGATAAGCCTAATTCCAAAGTTGGTGTACGGAGATCCCAGGTCAAGATTAGAGACCAAAGATGCATTTGATATTGCTGTCAACAAAATACTTAAGAGGATAGAAAATGTAAGGAAGGTGATCAGAGAGGGGAGGGATCCTAGTATCGGATTTGCAGAGCCGGATGGTAATAAGTTCCTATTTCCTGAGGAGCTAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

495

Amino Acids

56.48

Weight (kDa)

7.9

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 73 - 407 2.1e-76 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1140
AccB7I CCANNNNNTGG 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 479
AciI CCGC 1 cut(s) 477
AclWI GGATC 6 cut(s) 536, 549, 995, 1316, 1418, 1431
AcsI RAATTY 4 cut(s) 263, 340, 1251, 1268
AcuI CTGAAG 2 cut(s) 393, 471
AdeI CACNNNGTG 1 cut(s) 457
AfaI GTAC 4 cut(s) 706, 955, 1157, 1316
AfeI AGCGCT 1 cut(s) 1135
AfiI CCNNNNNNNGG 3 cut(s) 17, 1057, 1433
AflII CTTAAG 1 cut(s) 1379
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 6 cut(s) 143, 268, 755, 981, 1219, 1257
AjnI CCWGG 2 cut(s) 511, 1325
AluBI AGCT 4 cut(s) 491, 762, 1082, 1480
AluI AGCT 4 cut(s) 491, 762, 1082, 1480
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 5 cut(s) 140, 300, 555, 624, 1334
AlwI GGATC 6 cut(s) 536, 549, 995, 1316, 1418, 1431
Aor51HI AGCGCT 1 cut(s) 1135
AoxI GGCC 3 cut(s) 514, 863, 896
ApoI RAATTY 4 cut(s) 263, 340, 1251, 1268
ArsI GACNNNNNNTTYG 4 cut(s) 623, 655, 1253, 1285
AspLEI GCGC 1 cut(s) 1136
AspS9I GGNCC 1 cut(s) 890
AsuC2I CCSGG 1 cut(s) 920
AsuHPI GGTGA 3 cut(s) 584, 1060, 1417
AsuNHI GCTAGC 1 cut(s) 1130
AvaII GGWCC 1 cut(s) 890
AxyI CCTNAGG 1 cut(s) 1473
BamHI GGATCC 2 cut(s) 541, 1423
Bbv12I GWGCWC 1 cut(s) 29
BccI CCATC 2 cut(s) 390, 1445
BciT130I CCWGG 2 cut(s) 513, 1327
BciVI GTATCC 1 cut(s) 1054
BclI TGATCA 3 cut(s) 279, 934, 1407
BcnI CCSGG 1 cut(s) 920
BcoDI GTCTC 5 cut(s) 140, 300, 555, 624, 1334
BfaI CTAG 3 cut(s) 1131, 1428, 1481
BfmI CTRYAG 2 cut(s) 667, 1053
BfoI RGCGCY 1 cut(s) 1137
BfrI CTTAAG 1 cut(s) 1379
BfuI GTATCC 1 cut(s) 1054
BmcAI AGTACT 1 cut(s) 955
Bme1390I CCNGG 3 cut(s) 513, 920, 1327
Bme18I GGWCC 1 cut(s) 890
BmgT120I GGNCC 1 cut(s) 890
BmiI GGNNCC 2 cut(s) 543, 1425
BmrFI CCNGG 3 cut(s) 513, 920, 1327
BmrI ACTGGG 1 cut(s) 706
BmsI GCATC 1 cut(s) 1339
BmtI GCTAGC 1 cut(s) 1134
BmuI ACTGGG 1 cut(s) 706
BpmI CTGGAG 1 cut(s) 15
Bpu10I CCTNAGC 1 cut(s) 480
BpuEI CTTGAG 2 cut(s) 539, 934
BpuMI CCSGG 1 cut(s) 920
BsaI GGTCTC 2 cut(s) 624, 1334
BsaJI CCNNGG 3 cut(s) 893, 919, 1325
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 1057, 1433
Bse1I ACTGG 6 cut(s) 307, 412, 701, 802, 1144, 1196
Bse21I CCTNAGG 1 cut(s) 1473
BseBI CCWGG 2 cut(s) 513, 1327
BseDI CCNNGG 3 cut(s) 893, 919, 1325
BseGI GGATG 3 cut(s) 805, 1123, 1456
BseLI CCNNNNNNNGG 3 cut(s) 17, 1057, 1433
BseMII CTCAG 3 cut(s) 494, 724, 1464
BseNI ACTGG 6 cut(s) 307, 412, 701, 802, 1144, 1196
BseRI GAGGAG 1 cut(s) 536
BshFI GGCC 3 cut(s) 516, 865, 898
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 3 cut(s) 919, 1127, 1448
BslI CCNNNNNNNGG 3 cut(s) 17, 1057, 1433
BsmAI GTCTC 5 cut(s) 140, 300, 555, 624, 1334
BsmI GAATGC 2 cut(s) 48, 1107
BsnI GGCC 3 cut(s) 516, 865, 898
Bso31I GGTCTC 2 cut(s) 624, 1334
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 9 cut(s) 250, 274, 279, 541, 934, 987, 1321, 1407, 1423
BspACI CCGC 1 cut(s) 477
BspANI GGCC 3 cut(s) 516, 865, 898
BspCNI CTCAG 3 cut(s) 493, 723, 1465
BspLI GGNNCC 2 cut(s) 543, 1425
BspOI GCTAGC 1 cut(s) 1134
BspPI GGATC 6 cut(s) 536, 549, 995, 1316, 1418, 1431
BspTI CTTAAG 1 cut(s) 1379
BspTNI GGTCTC 2 cut(s) 624, 1334
BsrBI CCGCTC 1 cut(s) 479
BsrI ACTGG 6 cut(s) 307, 412, 701, 802, 1144, 1196
BssECI CCNNGG 3 cut(s) 893, 919, 1325
BssMI GATC 9 cut(s) 250, 274, 279, 541, 934, 987, 1321, 1407, 1423
BssT1I CCWWGG 1 cut(s) 893
Bst2UI CCWGG 2 cut(s) 513, 1327
Bst4CI ACNGT 5 cut(s) 290, 821, 1006, 1012, 1226
Bst6I CTCTTC 2 cut(s) 59, 570
BstAFI CTTAAG 1 cut(s) 1379
BstC8I GCNNGC 2 cut(s) 1046, 1132
BstDEI CTNAG 4 cut(s) 480, 710, 1164, 1473
BstF5I GGATG 3 cut(s) 805, 1123, 1456
BstH2I RGCGCY 1 cut(s) 1137
BstHHI GCGC 1 cut(s) 1136
BstKTI GATC 9 cut(s) 253, 277, 282, 544, 937, 990, 1324, 1410, 1426
BstMAI GTCTC 5 cut(s) 140, 300, 555, 624, 1334
BstMBI GATC 9 cut(s) 250, 274, 279, 541, 934, 987, 1321, 1407, 1423
BstMWI GCNNNNNNNGC 2 cut(s) 862, 904
BstNI CCWGG 2 cut(s) 513, 1327
BstNSI RCATGY 2 cut(s) 316, 325
BstSCI CCNGG 3 cut(s) 511, 918, 1325
BstSFI CTRYAG 2 cut(s) 667, 1053
BstX2I RGATCY 3 cut(s) 541, 1321, 1423
BstXI CCANNNNNNTGG 2 cut(s) 39, 983
BstYI RGATCY 3 cut(s) 541, 1321, 1423
Bsu36I CCTNAGG 1 cut(s) 1473
BsuI GTATCC 1 cut(s) 1054
BsuRI GGCC 3 cut(s) 516, 865, 898
BtsCI GGATG 3 cut(s) 805, 1123, 1456
BtsIMutI CAGTG 5 cut(s) 795, 826, 839, 944, 1203
Cac8I GCNNGC 2 cut(s) 1046, 1132
CfoI GCGC 1 cut(s) 1136
Cfr13I GGNCC 1 cut(s) 890
Csp6I GTAC 4 cut(s) 705, 954, 1156, 1315
CspCI CAANNNNNGTGG 2 cut(s) 518, 553
CviAII CATG 7 cut(s) 219, 245, 313, 322, 736, 1264, 1276
CviQI GTAC 4 cut(s) 705, 954, 1156, 1315
DdeI CTNAG 4 cut(s) 480, 710, 1164, 1473
DpnI GATC 9 cut(s) 252, 276, 281, 543, 936, 989, 1323, 1409, 1425
DpnII GATC 9 cut(s) 250, 274, 279, 541, 934, 987, 1321, 1407, 1423
DraIII CACNNNGTG 1 cut(s) 457
Eam1104I CTCTTC 2 cut(s) 59, 570
EarI CTCTTC 2 cut(s) 59, 570
Eco130I CCWWGG 1 cut(s) 893
Eco147I AGGCCT 2 cut(s) 865, 898
Eco31I GGTCTC 2 cut(s) 624, 1334
Eco47I GGWCC 1 cut(s) 890
Eco47III AGCGCT 1 cut(s) 1135
Eco57I CTGAAG 2 cut(s) 393, 471
Eco81I CCTNAGG 1 cut(s) 1473
EcoRI GAATTC 1 cut(s) 1268
EcoRII CCWGG 2 cut(s) 511, 1325
EcoT14I CCWWGG 1 cut(s) 893
EcoT22I ATGCAT 1 cut(s) 1354
ErhI CCWWGG 1 cut(s) 893
FaeI CATG 7 cut(s) 222, 248, 316, 325, 739, 1267, 1279
FatI CATG 7 cut(s) 218, 244, 312, 321, 735, 1263, 1275
FbaI TGATCA 3 cut(s) 279, 934, 1407
FokI GGATG 3 cut(s) 792, 1110, 1463
FspBI CTAG 3 cut(s) 1131, 1428, 1481
GlaI GCGC 1 cut(s) 1135
GsuI CTGGAG 1 cut(s) 15
HaeII RGCGCY 1 cut(s) 1137
HaeIII GGCC 3 cut(s) 516, 865, 898
HapII CCGG 3 cut(s) 919, 1127, 1448
HhaI GCGC 1 cut(s) 1136
Hin1II CATG 7 cut(s) 222, 248, 316, 325, 739, 1267, 1279
Hin6I GCGC 1 cut(s) 1134
HinP1I GCGC 1 cut(s) 1134
HincII GTYRAC 3 cut(s) 530, 747, 1369
HindII GTYRAC 3 cut(s) 530, 747, 1369
HinfI GANTC 8 cut(s) 178, 215, 293, 526, 563, 603, 725, 1088
HpaII CCGG 3 cut(s) 919, 1127, 1448
HphI GGTGA 3 cut(s) 584, 1060, 1417
Hpy166II GTNNAC 8 cut(s) 329, 530, 707, 747, 876, 890, 1315, 1369
Hpy188I TCNGA 6 cut(s) 279, 373, 694, 1029, 1412, 1436
Hpy188III TCNNGA 4 cut(s) 32, 356, 1332, 1472
Hpy8I GTNNAC 8 cut(s) 329, 530, 707, 747, 876, 890, 1315, 1369
HpyAV CCTTC 3 cut(s) 368, 749, 1396
HpyCH4III ACNGT 5 cut(s) 290, 821, 1006, 1012, 1226
HpyCH4V TGCA 6 cut(s) 812, 960, 1048, 1107, 1352, 1442
HpyF10VI GCNNNNNNNGC 2 cut(s) 862, 904
HpyF3I CTNAG 4 cut(s) 480, 710, 1164, 1473
Hsp92II CATG 7 cut(s) 222, 248, 316, 325, 739, 1267, 1279
HspAI GCGC 1 cut(s) 1134
Ksp22I TGATCA 3 cut(s) 279, 934, 1407
Kzo9I GATC 9 cut(s) 250, 274, 279, 541, 934, 987, 1321, 1407, 1423
LmnI GCTCC 1 cut(s) 1477
LweI GCATC 1 cut(s) 1339
MaeI CTAG 3 cut(s) 1131, 1428, 1481
MaeIII GTNAC 4 cut(s) 230, 308, 715, 1006
MalI GATC 9 cut(s) 252, 276, 281, 543, 936, 989, 1323, 1409, 1425
MbiI CCGCTC 1 cut(s) 479
MboI GATC 9 cut(s) 250, 274, 279, 541, 934, 987, 1321, 1407, 1423
MboII GAAGA 6 cut(s) 46, 71, 245, 587, 625, 1010
MfeI CAATTG 3 cut(s) 162, 750, 991
MflI RGATCY 3 cut(s) 541, 1321, 1423
MhlI GDGCHC 1 cut(s) 29
MlyI GAGTC 6 cut(s) 302, 535, 557, 612, 734, 1082
Mph1103I ATGCAT 1 cut(s) 1354
MseI TTAA 3 cut(s) 363, 383, 1380
MslI CAYNNNNRTG 2 cut(s) 740, 981
MspCI CTTAAG 1 cut(s) 1379
MspI CCGG 3 cut(s) 919, 1127, 1448
MspR9I CCNGG 3 cut(s) 513, 920, 1327
MunI CAATTG 3 cut(s) 162, 750, 991
Mva1269I GAATGC 2 cut(s) 48, 1107
MvaI CCWGG 2 cut(s) 513, 1327
MwoI GCNNNNNNNGC 2 cut(s) 862, 904
NciI CCSGG 1 cut(s) 920
NdeII GATC 9 cut(s) 250, 274, 279, 541, 934, 987, 1321, 1407, 1423
NheI GCTAGC 1 cut(s) 1130
NlaIII CATG 7 cut(s) 222, 248, 316, 325, 739, 1267, 1279
NlaIV GGNNCC 2 cut(s) 543, 1425
NmuCI GTSAC 1 cut(s) 715
NsiI ATGCAT 1 cut(s) 1354
NspI RCATGY 2 cut(s) 316, 325
PceI AGGCCT 2 cut(s) 865, 898
PciI ACATGT 1 cut(s) 321
PctI GAATGC 2 cut(s) 48, 1107
PfeI GAWTC 2 cut(s) 178, 215
PflMI CCANNNNNTGG 1 cut(s) 17
PleI GAGTC 6 cut(s) 301, 534, 557, 611, 733, 1082
PpsI GAGTC 6 cut(s) 301, 534, 557, 611, 733, 1082
PscI ACATGT 1 cut(s) 321
PsiI TTATAA 1 cut(s) 1140
Psp6I CCWGG 2 cut(s) 511, 1325
PspGI CCWGG 2 cut(s) 511, 1325
PspN4I GGNNCC 2 cut(s) 543, 1425
PspPI GGNCC 1 cut(s) 890
PsuI RGATCY 3 cut(s) 541, 1321, 1423
RsaI GTAC 4 cut(s) 706, 955, 1157, 1316
RsaNI GTAC 4 cut(s) 705, 954, 1156, 1315
RseI CAYNNNNRTG 2 cut(s) 740, 981
SaqAI TTAA 3 cut(s) 363, 383, 1380
Sau3AI GATC 9 cut(s) 250, 274, 279, 541, 934, 987, 1321, 1407, 1423
Sau96I GGNCC 1 cut(s) 890
ScaI AGTACT 1 cut(s) 955
SchI GAGTC 6 cut(s) 302, 535, 557, 612, 734, 1082
ScrFI CCNGG 3 cut(s) 513, 920, 1327
SduI GDGCHC 1 cut(s) 29
SetI ASST 9 cut(s) 493, 552, 764, 828, 966, 1084, 1331, 1407, 1482
SfaNI GCATC 1 cut(s) 1339
SfcI CTRYAG 2 cut(s) 667, 1053
SinI GGWCC 1 cut(s) 890
SmiMI CAYNNNNRTG 2 cut(s) 740, 981
SmlI CTYRAG 3 cut(s) 518, 949, 1379
SmoI CTYRAG 3 cut(s) 518, 949, 1379
SseBI AGGCCT 2 cut(s) 865, 898
SsiI CCGC 1 cut(s) 477
SspMI CTAG 3 cut(s) 1131, 1428, 1481
StuI AGGCCT 2 cut(s) 865, 898
StyD4I CCNGG 3 cut(s) 511, 918, 1325
StyI CCWWGG 1 cut(s) 893
TaaI ACNGT 5 cut(s) 290, 821, 1006, 1012, 1226
TaqI TCGA 5 cut(s) 185, 596, 606, 663, 1086
TatI WGTACW 2 cut(s) 704, 953
TfiI GAWTC 2 cut(s) 178, 215
Tru1I TTAA 3 cut(s) 363, 383, 1380
Tru9I TTAA 3 cut(s) 363, 383, 1380
TscAI CASTG 5 cut(s) 802, 826, 839, 944, 1203
TseFI GTSAC 1 cut(s) 715
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 4 cut(s) 207, 461, 794, 1112
TspGWI ACGGA 2 cut(s) 781, 1332
TspRI CASTG 5 cut(s) 802, 826, 839, 944, 1203
Van91I CCANNNNNTGG 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 1379
VpaK11BI GGWCC 1 cut(s) 890
XapI RAATTY 4 cut(s) 263, 340, 1251, 1268
XceI RCATGY 2 cut(s) 316, 325
XspI CTAG 3 cut(s) 1131, 1428, 1481
ZrmI AGTACT 1 cut(s) 955
Zsp2I ATGCAT 1 cut(s) 1354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.