Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006406

Physical Location & Seq

Genomic Coordinates Forward (+)

12106319 .. 12108111

Gene Structure 1793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1155300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCTGAAATTGCAGATCACACCAAGGTTCTCATAAGGGAATTCAGTGAAGACACAGATATTGAAGTGGTGGGGAAACTAGAGAGGGACTGTGAGCTAGAGTCTAAAAAGGGGTTCTCCATTTTCACTAGCATGATGGGTGACCCCTTTTGTAGGATTAGGTTCTACCCCCTTCATGTTATGCTGGTAGCAGAGCTGCTCGAAAACGGGGAACTTGTTGGCGTGGTTCGAGGATGCATAAAGCATGTAGGGACTGGTTCCGGGGCAAGATACGTGATAGGTTGCATACTAGGCCTTCGCGTCTCTCCTATACACCGGCGGATGGGAATCGGGTTGAAACTCATGAACTCGGTGGAGGAGTGGTTGCTGAGGAAGGGAGCACAGTACACATTCTTGGCAACTGAAGAGAGCAACACCGCGTCCACCAATCTATTCACTTACAAATGCAACTACAGGAAGCTCAGCTCGCTAATCATATTTGTTCAGCCAGTTTGTTCTGCTGTAGAGGATCCGATGCCTCGAGATATAAAAATAGAGAAGCTACATGTCGACGAGGCAATTTTCTTGTACAAAAGCAGACTAAGGAGCAAAGACATATATCCAACAGATATTGACGTGATCTTGAAGGAAAAGCTCAGCCTCGGCACTTGGGTGTTCTATTTTGAAGAACAAGGCTGGATCAACTTAAACAGTCAGGAAAGTAGTAAGGACACCGCCGGCGAAACTCAAAGCTCTTGGATCATCTTTAGCATATGGAATACCTGTGAAGCTTACAAGTCTCATCCACTGAGATCTTTGCATGCTACCCTAAGCCATGCAACGGAGAAAATTTTCTCCTGCCTAAATCTGCCGGTCAGTGTCTCCATGCAAAGCTCCTTCGGGTTTCTCTTTCTCTACGGGCTTCATGGAGAGGGAGAGAACGTCGGGGAGCTTATGAAATCCGTCTGGAACTTCGCCTCTAGGTTGGGACAAACTGTGAAGGACAGCAAACTGATTTTAACTGAGCTGGGGTTATGTGATCCTCTTATAAAGCATGTCCCTAAGGATTCCGATATGTCATGTATCGAAGATGTCTGGTACGGCAAGAGTTTGATCAACCACGCTGATGACAAAGATGAACTGCTTGTAAAGGGATCACTTGGGAATGTGTTTGTTGATCCTAGAGAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

391

Amino Acids

44.09

Weight (kDa)

5.73

Isoelectric Point (pI)

34.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	56 - 146	3.1e-13	Acetyltransferase (GNAT) family
FR47	PF08445	73 - 154	3e-06	FR47-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19610 FvH4_4g19610 FvH4_4g19610 FvH4_4g19610 FvH4_4g19610
malus_domestica	MD13G1155300.v1.1
prunus_persica	Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1
pyrus_communis	pycom13g13210 pycom13g13220
rosa_chinensis	RchiOBHm_Chr4g0424871
rosa_laevigata	RLG00000007413
rosa_multiflora	Rmu_sc0006754.1_g000005
rosa_roxburghii	Rroxscaffold_5G00367090
rosa_rugosa	Rorug03G0364000.1 Rorug04G0199900 Rorug04G0200000 Rorug04G0200100 Rorug04G0200100 Rorug04G0200100
rosa_samantha	Rh4AG257600 Rh4BG263000 Rh4CG273900 Rh4DG258700
rosa_wichuraiana	Rw4G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1028
AccI	GTMKAC	1 cut(s)	549
AccII	CGCG	2 cut(s)	300, 419
AciI	CCGC	3 cut(s)	319, 417, 714
AclWI	GGATC	7 cut(s)	503, 516, 686, 746, 1013, 1141, 1151
AcsI	RAATTY	3 cut(s)	41, 828, 1166
AcuI	CTGAAG	1 cut(s)	423
AfaI	GTAC	3 cut(s)	386, 569, 1079
AfiI	CCNNNNNNNGG	3 cut(s)	153, 322, 820
AflIII	ACRYGT	1 cut(s)	544
AgsI	TTSAA	4 cut(s)	65, 337, 625, 665
AjiI	CACGTC	1 cut(s)	616
AleI	CACNNNNGTG	1 cut(s)	650
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	3 cut(s)	307, 783, 865
AlwI	GGATC	7 cut(s)	503, 516, 686, 746, 1013, 1141, 1151
Ama87I	CYCGRG	1 cut(s)	519
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	1 cut(s)	196
ApoI	RAATTY	3 cut(s)	41, 828, 1166
Asp700I	GAANNNNTTC	1 cut(s)	830
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	519
AxyI	CCTNAGG	1 cut(s)	1041
BamHI	GGATCC	1 cut(s)	508
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	382
BbvCI	CCTCAGC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	2 cut(s)	130, 316
BceAI	ACGGC	1 cut(s)	1096
BclI	TGATCA	1 cut(s)	1092
BcnI	CCSGG	1 cut(s)	262
BcoDI	GTCTC	3 cut(s)	307, 783, 865
BfaI	CTAG	7 cut(s)	80, 98, 129, 290, 960, 1161, 1171
BfmI	CTRYAG	2 cut(s)	451, 501
BglII	AGATCT	1 cut(s)	791
BisI	GCNGC	1 cut(s)	197
BlpI	GCTNAGC	2 cut(s)	461, 635
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	262
BmeT110I	CYCGRG	1 cut(s)	519
BmgBI	CACGTC	1 cut(s)	616
BmiI	GGNNCC	2 cut(s)	259, 510
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	2 cut(s)	224, 504
BpiI	GAAGAC	1 cut(s)	57
Bpu10I	CCTNAGC	2 cut(s)	368, 809
Bpu1102I	GCTNAGC	2 cut(s)	461, 635
BpuMI	CCSGG	1 cut(s)	262
BsaAI	YACGTR	1 cut(s)	274
BsaBI	GATNNNNATC	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	24, 261, 640
BsaXI	ACNNNNNCTCC	4 cut(s)	347, 377, 906, 936
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 322, 820
Bse118I	RCCGGY	3 cut(s)	315, 716, 850
Bse1I	ACTGG	2 cut(s)	259, 488
Bse21I	CCTNAGG	1 cut(s)	1041
Bse8I	GATNNNNATC	1 cut(s)	326
BseDI	CCNNGG	3 cut(s)	24, 261, 640
BseGI	GGATG	3 cut(s)	239, 327, 781
BseJI	GATNNNNATC	1 cut(s)	326
BseLI	CCNNNNNNNGG	3 cut(s)	153, 322, 820
BseMII	CTCAG	5 cut(s)	359, 475, 649, 779, 993
BseNI	ACTGG	2 cut(s)	259, 488
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	183
BseYI	CCCAGC	1 cut(s)	1006
Bsh1236I	CGCG	2 cut(s)	300, 419
BshFI	GGCC	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	519
BsiSI	CCGG	4 cut(s)	261, 316, 717, 851
BslFI	GGGAC	4 cut(s)	101, 265, 981, 1022
BslI	CCNNNNNNNGG	3 cut(s)	153, 322, 820
BsmAI	GTCTC	3 cut(s)	307, 783, 865
BsmBI	CGTCTC	1 cut(s)	307
BsmFI	GGGAC	4 cut(s)	101, 265, 981, 1022
BsnI	GGCC	1 cut(s)	294
BsoBI	CYCGRG	1 cut(s)	519
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp1407I	TGTACA	1 cut(s)	567
Bsp1720I	GCTNAGC	2 cut(s)	461, 635
BspACI	CCGC	3 cut(s)	319, 417, 714
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	5 cut(s)	360, 474, 648, 780, 994
BspFNI	CGCG	2 cut(s)	300, 419
BspHI	TCATGA	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	259, 510
BspPI	GGATC	7 cut(s)	503, 516, 686, 746, 1013, 1141, 1151
BsrFI	RCCGGY	3 cut(s)	315, 716, 850
BsrGI	TGTACA	1 cut(s)	567
BsrI	ACTGG	2 cut(s)	259, 488
BssAI	RCCGGY	3 cut(s)	315, 716, 850
BssECI	CCNNGG	3 cut(s)	24, 261, 640
BssT1I	CCWWGG	1 cut(s)	24
Bst4CI	ACNGT	4 cut(s)	92, 384, 692, 976
Bst6I	CTCTTC	1 cut(s)	399
BstAUI	TGTACA	1 cut(s)	567
BstBAI	YACGTR	1 cut(s)	274
BstC8I	GCNNGC	3 cut(s)	467, 718, 801
BstDEI	CTNAG	8 cut(s)	368, 461, 581, 635, 788, 809, 1002, 1041
BstEII	GGTNACC	1 cut(s)	140
BstENI	CCTNNNNNAGG	1 cut(s)	151
BstF5I	GGATG	3 cut(s)	239, 327, 781
BstFNI	CGCG	2 cut(s)	300, 419
BstMAI	GTCTC	3 cut(s)	307, 783, 865
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 291, 466
BstNSI	RCATGY	4 cut(s)	248, 548, 803, 1037
BstPI	GGTNACC	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	260
BstSFI	CTRYAG	2 cut(s)	451, 501
BstUI	CGCG	2 cut(s)	300, 419
BstV1I	GCAGC	1 cut(s)	183
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	2 cut(s)	508, 791
BstYI	RGATCY	2 cut(s)	508, 791
Bsu36I	CCTNAGG	1 cut(s)	1041
BsuRI	GGCC	1 cut(s)	294
BtrI	CACGTC	1 cut(s)	616
BtsCI	GGATG	3 cut(s)	239, 327, 781
BtsIMutI	CAGTG	3 cut(s)	52, 785, 862
Cac8I	GCNNGC	3 cut(s)	467, 718, 801
CciI	TCATGA	1 cut(s)	342
Cfr10I	RCCGGY	3 cut(s)	315, 716, 850
CseI	GACGC	2 cut(s)	289, 408
Csp6I	GTAC	3 cut(s)	385, 568, 1078
CviQI	GTAC	3 cut(s)	385, 568, 1078
DdeI	CTNAG	8 cut(s)	368, 461, 581, 635, 788, 809, 1002, 1041
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
EciI	GGCGGA	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	24
Eco147I	AGGCCT	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	423
Eco81I	CCTNAGG	1 cut(s)	1041
Eco88I	CYCGRG	1 cut(s)	519
Eco91I	GGTNACC	1 cut(s)	140
EcoNI	CCTNNNNNAGG	1 cut(s)	151
EcoO65I	GGTNACC	1 cut(s)	140
EcoRI	GAATTC	2 cut(s)	41, 1166
EcoT14I	CCWWGG	1 cut(s)	24
EcoT22I	ATGCAT	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	24
Esp3I	CGTCTC	1 cut(s)	307
FaqI	GGGAC	4 cut(s)	101, 265, 981, 1022
FauNDI	CATATG	1 cut(s)	752
FbaI	TGATCA	1 cut(s)	1092
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	3 cut(s)	246, 334, 768
Fsp4HI	GCNGC	1 cut(s)	197
FspBI	CTAG	7 cut(s)	80, 98, 129, 290, 960, 1161, 1171
GluI	GCNGC	1 cut(s)	197
GsaI	CCCAGC	1 cut(s)	1010
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	4 cut(s)	261, 316, 717, 851
HgaI	GACGC	2 cut(s)	289, 408
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	768
HinfI	GANTC	3 cut(s)	101, 327, 1046
HpaII	CCGG	4 cut(s)	261, 316, 717, 851
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	3 cut(s)	387, 423, 550
Hpy188I	TCNGA	2 cut(s)	513, 1051
Hpy188III	TCNNGA	5 cut(s)	343, 521, 622, 695, 946
Hpy8I	GTNNAC	3 cut(s)	387, 423, 550
Hpy99I	CGWCG	2 cut(s)	554, 926
HpyAV	CCTTC	6 cut(s)	182, 305, 367, 619, 886, 973
HpyCH4III	ACNGT	4 cut(s)	92, 384, 692, 976
HpyCH4IV	ACGT	3 cut(s)	273, 615, 921
HpyCH4V	TGCA	7 cut(s)	14, 237, 285, 447, 799, 818, 868
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 291, 466
HpyF3I	CTNAG	8 cut(s)	368, 461, 581, 635, 788, 809, 1002, 1041
HpySE526I	ACGT	3 cut(s)	273, 615, 921
KroI	GCCGGC	1 cut(s)	716
KroNI	GCCGGC	1 cut(s)	718
Ksp22I	TGATCA	1 cut(s)	1092
LmnI	GCTCC	4 cut(s)	377, 585, 878, 928
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	2 cut(s)	224, 504
MaeI	CTAG	7 cut(s)	80, 98, 129, 290, 960, 1161, 1171
MaeII	ACGT	3 cut(s)	273, 615, 921
MaeIII	GTNAC	1 cut(s)	140
MboII	GAAGA	4 cut(s)	62, 416, 677, 1079
MflI	RGATCY	2 cut(s)	508, 791
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	5 cut(s)	9, 41, 558, 828, 1166
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	626
Mph1103I	ATGCAT	1 cut(s)	239
MreI	CGCCGGCG	1 cut(s)	716
MroNI	GCCGGC	1 cut(s)	716
MroXI	GAANNNNTTC	1 cut(s)	830
MseI	TTAA	2 cut(s)	686, 998
MslI	CAYNNNNRTG	3 cut(s)	131, 650, 1104
MspI	CCGG	4 cut(s)	261, 316, 717, 851
MspR9I	CCNGG	1 cut(s)	262
MvnI	CGCG	2 cut(s)	300, 419
MwoI	GCNNNNNNNGC	3 cut(s)	11, 291, 466
NaeI	GCCGGC	1 cut(s)	718
NciI	CCSGG	1 cut(s)	262
NdeI	CATATG	1 cut(s)	752
NgoMIV	GCCGGC	1 cut(s)	716
NlaIV	GGNNCC	2 cut(s)	259, 510
NmeAIII	GCCGAG	1 cut(s)	621
NmuCI	GTSAC	1 cut(s)	140
NsiI	ATGCAT	1 cut(s)	239
NspI	RCATGY	4 cut(s)	248, 548, 803, 1037
OliI	CACNNNNGTG	1 cut(s)	650
PaeI	GCATGC	1 cut(s)	803
PaeR7I	CTCGAG	1 cut(s)	519
PagI	TCATGA	1 cut(s)	342
PceI	AGGCCT	1 cut(s)	294
PciI	ACATGT	1 cut(s)	544
PdiI	GCCGGC	1 cut(s)	718
PdmI	GAANNNNTTC	1 cut(s)	830
PfeI	GAWTC	2 cut(s)	327, 1046
PkrI	GCNGC	1 cut(s)	198
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Ppu21I	YACGTR	1 cut(s)	274
PscI	ACATGT	1 cut(s)	544
PsiI	TTATAA	1 cut(s)	1028
PspEI	GGTNACC	1 cut(s)	140
PspFI	CCCAGC	1 cut(s)	1006
PspN4I	GGNNCC	2 cut(s)	259, 510
PsuI	RGATCY	2 cut(s)	508, 791
RsaI	GTAC	3 cut(s)	386, 569, 1079
RsaNI	GTAC	3 cut(s)	385, 568, 1078
RseI	CAYNNNNRTG	3 cut(s)	131, 650, 1104
SalI	GTCGAC	1 cut(s)	548
SaqAI	TTAA	2 cut(s)	686, 998
SatI	GCNGC	1 cut(s)	197
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	382
SfaNI	GCATC	2 cut(s)	224, 504
SfcI	CTRYAG	2 cut(s)	451, 501
Sfr274I	CTCGAG	1 cut(s)	519
SgrAI	CRCCGGYG	2 cut(s)	315, 716
SlaI	CTCGAG	1 cut(s)	519
SmiMI	CAYNNNNRTG	3 cut(s)	131, 650, 1104
SmlI	CTYRAG	1 cut(s)	519
SmoI	CTYRAG	1 cut(s)	519
SphI	GCATGC	1 cut(s)	803
Sse9I	AATT	5 cut(s)	9, 41, 558, 828, 1166
SseBI	AGGCCT	1 cut(s)	294
SsiI	CCGC	3 cut(s)	319, 417, 714
SspMI	CTAG	7 cut(s)	80, 98, 129, 290, 960, 1161, 1171
StuI	AGGCCT	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	4 cut(s)	92, 384, 692, 976
TaiI	ACGT	3 cut(s)	276, 618, 924
TaqI	TCGA	5 cut(s)	201, 229, 520, 549, 1065
TasI	AATT	5 cut(s)	9, 41, 558, 828, 1166
TatI	WGTACW	2 cut(s)	384, 567
TfiI	GAWTC	2 cut(s)	327, 1046
Tru1I	TTAA	2 cut(s)	686, 998
Tru9I	TTAA	2 cut(s)	686, 998
TscAI	CASTG	3 cut(s)	52, 792, 862
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	5 cut(s)	164, 359, 893, 950, 1131
TspGWI	ACGGA	2 cut(s)	836, 931
TspRI	CASTG	3 cut(s)	52, 792, 862
XagI	CCTNNNNNAGG	1 cut(s)	151
XapI	RAATTY	3 cut(s)	41, 828, 1166
XceI	RCATGY	4 cut(s)	248, 548, 803, 1037
XhoI	CTCGAG	1 cut(s)	519
XmiI	GTMKAC	1 cut(s)	549
XmnI	GAANNNNTTC	1 cut(s)	830
XspI	CTAG	7 cut(s)	80, 98, 129, 290, 960, 1161, 1171
Zsp2I	ATGCAT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.