Rw4G022230

FR47-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0006406
Physical Location & Seq
Reverse (-)
47443336 .. 47444980
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G022230.1

Sequence Viewer

Length: 1191 bp
ATGGTTGACAAGGCAGTGAACAAGTTTCTTATAAGGGAGTTCAGTGCAGACACCGATATTGAAGTGGTGGGGAAGCTAGAGAGGAACTGTGAGCTAGGGTCTAAAAGGGGGGTCTCCATTTTCACTAACATGATGTGTGACCCTTTATGTAGGATTAGGTTCTACCCCCTTCATATTATACTGGTAGCACAGCTGCTTGAAAATGAGGAGCTTGTCGGAGTGGTTCGAGGATGCATCAAGCATGTGGGGACTGGTTTTGGGGGAGTATATGTGATGGGTTGCATACTAGGCCTTCGAGTCTCTCCCACACACCGGCGGATGGGAATTGGATTTCAATTGATGAACTCAGTGGAGGAGTGGCTGCTGAGAAAAGGAGCACAGTACACATTCCTGGCCACTGAAAGGAACAACACCGCCTCTACAAATCTATTCACTTCCAAATGCAATTACGTGAACATCAGCTCACTAATCATATTTGTGCAACCAATTTGTTCATCTGCAAAACATCTGCTGCCTCAAAATATTAAAATAGAGAAGTTGCATGTAGACCAGGCAATTTCCCTGTACGAAAACAAGCTAAGAAGCAAAGACATATCTCCAACAGACATGGATGTGATCTTAAGGGAAAAGCTCAGCCTGGGCACTTGGGTGTGTTATTTCGAAGAACAGGGTTGGATCAACTTGGACAGTGAGGGAAACAACAAGGGAACAATCACCAAAACGCAAAGCTCTTGGGTCATCTTTAGCATATGGAATAATTGTGAACCTTATAAGCTTCATATAAGAAAGTCACATCCTCTAAGGTATTTTCATGCTACCTTAAACCATGCAAGAGAGAAAATCTTCTCCTGTTTGAAAATGCCTCAGAGTAAGGTCTCGGTGCAAAGCTCCCTTGGGTTTCTCTTTCTCTATGGGATTCATGGGGAGGGAGAGCAGCTTGGTGAGCTTATGAAATCTGTTTGGAACTTCACATTAGGATTGGGGCAGAATGTGAAGGACAGCAAGTTGATTATAACTGAGCTGGGGCAGTGTGATCCTCTCATAAAGCATGTCCCAGACAATCCCAGCATTTCACGTATCCATGATCTCTGGTACGCGAAAAGTGTGAGCAGCCACCACCCTGATGACCAAGATGCTCTGCTAATGAAGGGTCCTTTGGGAAATGTGTTTGTTGATCCAAGGGAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

396

Amino Acids

44.9

Weight (kDa)

8.4

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 60 - 149 2e-13 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 67 - 146 3.9e-06 Acetyltransferase (GNAT) domain
FR47 PF08445 90 - 145 3.6e-06 FR47-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 32, 771, 1013
AccI GTMKAC 1 cut(s) 546
AccII CGCG 1 cut(s) 1097
AciI CCGC 2 cut(s) 316, 414
AclWI GGATC 3 cut(s) 683, 1028, 1169
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 1 cut(s) 1184
AfaI GTAC 3 cut(s) 383, 566, 1094
AfiI CCNNNNNNNGG 3 cut(s) 312, 319, 402
AflII CTTAAG 1 cut(s) 619
AgsI TTSAA 4 cut(s) 62, 200, 335, 856
AjnI CCWGG 3 cut(s) 390, 549, 636
AjuI GAANNNNNNNTTGG 2 cut(s) 1139, 1171
AleI CACNNNNGTG 1 cut(s) 647
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 3 cut(s) 118, 304, 880
AlwI GGATC 3 cut(s) 683, 1028, 1169
AoxI GGCC 2 cut(s) 289, 393
ApeKI GCWGC 5 cut(s) 193, 361, 511, 934, 1110
ApoI RAATTY 1 cut(s) 1184
Asp700I GAANNNNTTC 1 cut(s) 842
AspS9I GGNCC 1 cut(s) 1151
AsuHPI GGTGA 2 cut(s) 706, 953
AsuII TTCGAA 1 cut(s) 660
AvaII GGWCC 1 cut(s) 1151
BaeGI GKGCMC 1 cut(s) 644
BalI TGGCCA 1 cut(s) 395
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 5 cut(s) 180, 348, 498, 946, 1122
BccI CCATC 2 cut(s) 268, 313
BciT130I CCWGG 3 cut(s) 392, 551, 638
BciVI GTATCC 1 cut(s) 1088
BcoDI GTCTC 3 cut(s) 118, 304, 880
BfaI CTAG 4 cut(s) 77, 95, 287, 1189
BfrI CTTAAG 1 cut(s) 619
BfuI GTATCC 1 cut(s) 1088
BisI GCNGC 5 cut(s) 194, 362, 512, 935, 1111
BlpI GCTNAGC 1 cut(s) 632
BlsI GCNGC 5 cut(s) 195, 363, 513, 936, 1112
Bme1390I CCNGG 3 cut(s) 392, 551, 638
Bme18I GGWCC 1 cut(s) 1151
BmgT120I GGNCC 1 cut(s) 1151
BmiI GGNNCC 1 cut(s) 1152
BmrFI CCNGG 3 cut(s) 392, 551, 638
BmsI GCATC 3 cut(s) 221, 243, 1123
Bpu1102I GCTNAGC 1 cut(s) 632
Bpu14I TTCGAA 1 cut(s) 660
BsaAI YACGTR 2 cut(s) 451, 1076
BsaI GGTCTC 2 cut(s) 118, 880
BsaJI CCNNGG 3 cut(s) 637, 892, 1178
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 3 cut(s) 312, 319, 402
Bse118I RCCGGY 1 cut(s) 312
Bse1I ACTGG 2 cut(s) 186, 256
BseBI CCWGG 3 cut(s) 392, 551, 638
BseDI CCNNGG 3 cut(s) 637, 892, 1178
BseGI GGATG 4 cut(s) 236, 324, 616, 793
BseLI CCNNNNNNNGG 3 cut(s) 312, 319, 402
BseMII CTCAG 5 cut(s) 356, 360, 646, 878, 1008
BseNI ACTGG 2 cut(s) 186, 256
BseRI GAGGAG 2 cut(s) 221, 368
BseSI GKGCMC 1 cut(s) 644
BseXI GCAGC 5 cut(s) 180, 348, 498, 946, 1122
BseYI CCCAGC 2 cut(s) 1021, 1064
BsgI GTGCAG 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 1097
BshFI GGCC 2 cut(s) 291, 395
BsiHKAI GWGCWC 1 cut(s) 379
BsiSI CCGG 1 cut(s) 313
BslFI GGGAC 2 cut(s) 262, 1037
BslI CCNNNNNNNGG 3 cut(s) 312, 319, 402
BsmAI GTCTC 3 cut(s) 118, 304, 880
BsmFI GGGAC 2 cut(s) 262, 1037
BsnI GGCC 2 cut(s) 291, 395
Bso31I GGTCTC 2 cut(s) 118, 880
Bsp119I TTCGAA 1 cut(s) 660
Bsp1286I GDGCHC 2 cut(s) 379, 644
Bsp143I GATC 5 cut(s) 615, 675, 1033, 1084, 1174
Bsp1720I GCTNAGC 1 cut(s) 632
BspACI CCGC 2 cut(s) 316, 414
BspANI GGCC 2 cut(s) 291, 395
BspCNI CTCAG 5 cut(s) 357, 359, 645, 877, 1009
BspFNI CGCG 1 cut(s) 1097
BspLI GGNNCC 1 cut(s) 1152
BspPI GGATC 3 cut(s) 683, 1028, 1169
BspT104I TTCGAA 1 cut(s) 660
BspTI CTTAAG 1 cut(s) 619
BspTNI GGTCTC 2 cut(s) 118, 880
BsrFI RCCGGY 1 cut(s) 312
BsrI ACTGG 2 cut(s) 186, 256
BssAI RCCGGY 1 cut(s) 312
BssECI CCNNGG 3 cut(s) 637, 892, 1178
BssMI GATC 5 cut(s) 615, 675, 1033, 1084, 1174
BssT1I CCWWGG 2 cut(s) 892, 1178
Bst2UI CCWGG 3 cut(s) 392, 551, 638
Bst4CI ACNGT 3 cut(s) 89, 381, 689
BstAFI CTTAAG 1 cut(s) 619
BstBAI YACGTR 2 cut(s) 451, 1076
BstBI TTCGAA 1 cut(s) 660
BstDEI CTNAG 7 cut(s) 346, 365, 578, 632, 800, 864, 1017
BstF5I GGATG 4 cut(s) 236, 324, 616, 793
BstFNI CGCG 1 cut(s) 1097
BstKTI GATC 5 cut(s) 618, 678, 1036, 1087, 1177
BstMAI GTCTC 3 cut(s) 118, 304, 880
BstMBI GATC 5 cut(s) 615, 675, 1033, 1084, 1174
BstMWI GCNNNNNNNGC 2 cut(s) 288, 943
BstNI CCWGG 3 cut(s) 392, 551, 638
BstNSI RCATGY 3 cut(s) 245, 545, 1052
BstSCI CCNGG 3 cut(s) 390, 549, 636
BstSLI GKGCMC 1 cut(s) 644
BstUI CGCG 1 cut(s) 1097
BstV1I GCAGC 5 cut(s) 180, 348, 498, 946, 1122
BsuI GTATCC 1 cut(s) 1088
BsuRI GGCC 2 cut(s) 291, 395
BtsCI GGATG 4 cut(s) 236, 324, 616, 793
BtsI GCAGTG 2 cut(s) 21, 1034
BtsIMutI CAGTG 6 cut(s) 21, 49, 354, 396, 694, 1034
Cfr10I RCCGGY 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 1151
Csp6I GTAC 3 cut(s) 382, 565, 1093
CviAII CATG 9 cut(s) 130, 242, 542, 607, 812, 827, 920, 1049, 1082
CviQI GTAC 3 cut(s) 382, 565, 1093
DdeI CTNAG 7 cut(s) 346, 365, 578, 632, 800, 864, 1017
DpnI GATC 5 cut(s) 617, 677, 1035, 1086, 1176
DpnII GATC 5 cut(s) 615, 675, 1033, 1084, 1174
EaeI YGGCCR 1 cut(s) 393
EciI GGCGGA 1 cut(s) 331
Eco130I CCWWGG 2 cut(s) 892, 1178
Eco147I AGGCCT 1 cut(s) 291
Eco31I GGTCTC 2 cut(s) 118, 880
Eco47I GGWCC 1 cut(s) 1151
EcoO109I RGGNCCY 1 cut(s) 1151
EcoRI GAATTC 1 cut(s) 1184
EcoRII CCWGG 3 cut(s) 390, 549, 636
EcoT14I CCWWGG 2 cut(s) 892, 1178
EcoT22I ATGCAT 1 cut(s) 236
ErhI CCWWGG 2 cut(s) 892, 1178
FaeI CATG 9 cut(s) 133, 245, 545, 610, 815, 830, 923, 1052, 1085
FaqI GGGAC 2 cut(s) 262, 1037
FatI CATG 9 cut(s) 129, 241, 541, 606, 811, 826, 919, 1048, 1081
FauNDI CATATG 1 cut(s) 749
FblI GTMKAC 1 cut(s) 546
Fnu4HI GCNGC 5 cut(s) 194, 362, 512, 935, 1111
FokI GGATG 4 cut(s) 243, 331, 623, 780
Fsp4HI GCNGC 5 cut(s) 194, 362, 512, 935, 1111
FspBI CTAG 4 cut(s) 77, 95, 287, 1189
GluI GCNGC 5 cut(s) 194, 362, 512, 935, 1111
GsaI CCCAGC 2 cut(s) 1025, 1068
HaeIII GGCC 2 cut(s) 291, 395
HapII CCGG 1 cut(s) 313
Hin1II CATG 9 cut(s) 133, 245, 545, 610, 815, 830, 923, 1052, 1085
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 2 cut(s) 297, 916
HpaII CCGG 1 cut(s) 313
HphI GGTGA 2 cut(s) 706, 953
Hpy166II GTNNAC 6 cut(s) 7, 19, 384, 454, 547, 764
Hpy188I TCNGA 2 cut(s) 218, 867
Hpy8I GTNNAC 6 cut(s) 7, 19, 384, 454, 547, 764
HpyAV CCTTC 4 cut(s) 179, 302, 988, 1141
HpyCH4III ACNGT 3 cut(s) 89, 381, 689
HpyCH4IV ACGT 2 cut(s) 450, 1075
HpyCH4V TGCA 9 cut(s) 47, 234, 282, 444, 481, 500, 541, 830, 883
HpyF10VI GCNNNNNNNGC 2 cut(s) 288, 943
HpyF3I CTNAG 7 cut(s) 346, 365, 578, 632, 800, 864, 1017
HpySE526I ACGT 2 cut(s) 450, 1075
Hsp92II CATG 9 cut(s) 133, 245, 545, 610, 815, 830, 923, 1052, 1085
Kzo9I GATC 5 cut(s) 615, 675, 1033, 1084, 1174
LmnI GCTCC 3 cut(s) 208, 374, 893
Lsp1109I GCAGC 5 cut(s) 180, 348, 498, 946, 1122
LweI GCATC 3 cut(s) 221, 243, 1123
MaeI CTAG 4 cut(s) 77, 95, 287, 1189
MaeII ACGT 2 cut(s) 450, 1075
MaeIII GTNAC 2 cut(s) 137, 789
MalI GATC 5 cut(s) 617, 677, 1035, 1086, 1176
MboI GATC 5 cut(s) 615, 675, 1033, 1084, 1174
MboII GAAGA 2 cut(s) 674, 835
MfeI CAATTG 1 cut(s) 335
MhlI GDGCHC 2 cut(s) 379, 644
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 7 cut(s) 324, 335, 445, 486, 555, 757, 1184
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 1 cut(s) 306
MmeI TCCRAC 3 cut(s) 196, 623, 653
Mox20I TGGCCA 1 cut(s) 395
Mph1103I ATGCAT 1 cut(s) 236
MroXI GAANNNNTTC 1 cut(s) 842
MscI TGGCCA 1 cut(s) 395
MseI TTAA 3 cut(s) 525, 620, 821
MslI CAYNNNNRTG 5 cut(s) 128, 476, 611, 647, 1122
Msp20I TGGCCA 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 193
MspCI CTTAAG 1 cut(s) 619
MspI CCGG 1 cut(s) 313
MspR9I CCNGG 3 cut(s) 392, 551, 638
MunI CAATTG 1 cut(s) 335
MvaI CCWGG 3 cut(s) 392, 551, 638
MvnI CGCG 1 cut(s) 1097
MwoI GCNNNNNNNGC 2 cut(s) 288, 943
NdeI CATATG 1 cut(s) 749
NdeII GATC 5 cut(s) 615, 675, 1033, 1084, 1174
NlaIII CATG 9 cut(s) 133, 245, 545, 610, 815, 830, 923, 1052, 1085
NlaIV GGNNCC 1 cut(s) 1152
NmuCI GTSAC 2 cut(s) 137, 789
NsiI ATGCAT 1 cut(s) 236
NspI RCATGY 3 cut(s) 245, 545, 1052
NspV TTCGAA 1 cut(s) 660
OliI CACNNNNGTG 1 cut(s) 647
PceI AGGCCT 1 cut(s) 291
PdmI GAANNNNTTC 1 cut(s) 842
PfeI GAWTC 1 cut(s) 916
PkrI GCNGC 5 cut(s) 195, 363, 513, 936, 1112
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Ppu21I YACGTR 2 cut(s) 451, 1076
PpuMI RGGWCCY 1 cut(s) 1151
PsiI TTATAA 3 cut(s) 32, 771, 1013
Psp5II RGGWCCY 1 cut(s) 1151
Psp6I CCWGG 3 cut(s) 390, 549, 636
PspFI CCCAGC 2 cut(s) 1021, 1064
PspGI CCWGG 3 cut(s) 390, 549, 636
PspN4I GGNNCC 1 cut(s) 1152
PspPI GGNCC 1 cut(s) 1151
PspPPI RGGWCCY 1 cut(s) 1151
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 3 cut(s) 383, 566, 1094
RsaNI GTAC 3 cut(s) 382, 565, 1093
RseI CAYNNNNRTG 5 cut(s) 128, 476, 611, 647, 1122
SaqAI TTAA 3 cut(s) 525, 620, 821
SatI GCNGC 5 cut(s) 194, 362, 512, 935, 1111
Sau3AI GATC 5 cut(s) 615, 675, 1033, 1084, 1174
Sau96I GGNCC 1 cut(s) 1151
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 3 cut(s) 392, 551, 638
SduI GDGCHC 2 cut(s) 379, 644
SfaNI GCATC 3 cut(s) 221, 243, 1123
SfuI TTCGAA 1 cut(s) 660
SgrAI CRCCGGYG 1 cut(s) 312
SinI GGWCC 1 cut(s) 1151
SmiMI CAYNNNNRTG 5 cut(s) 128, 476, 611, 647, 1122
SmlI CTYRAG 1 cut(s) 619
SmoI CTYRAG 1 cut(s) 619
Sse9I AATT 7 cut(s) 324, 335, 445, 486, 555, 757, 1184
SseBI AGGCCT 1 cut(s) 291
SsiI CCGC 2 cut(s) 316, 414
SspI AATATT 1 cut(s) 523
SspMI CTAG 4 cut(s) 77, 95, 287, 1189
StuI AGGCCT 1 cut(s) 291
StyD4I CCNGG 3 cut(s) 390, 549, 636
StyI CCWWGG 2 cut(s) 892, 1178
TaaI ACNGT 3 cut(s) 89, 381, 689
TaiI ACGT 2 cut(s) 453, 1078
TaqI TCGA 3 cut(s) 226, 295, 660
TasI AATT 7 cut(s) 324, 335, 445, 486, 555, 757, 1184
TatI WGTACW 1 cut(s) 381
TfiI GAWTC 1 cut(s) 916
Tru1I TTAA 3 cut(s) 525, 620, 821
Tru9I TTAA 3 cut(s) 525, 620, 821
TscAI CASTG 6 cut(s) 21, 49, 354, 403, 694, 1034
TseFI GTSAC 2 cut(s) 137, 789
TseI GCWGC 5 cut(s) 193, 361, 511, 934, 1110
Tsp45I GTSAC 2 cut(s) 137, 789
TspDTI ATGAA 8 cut(s) 161, 356, 483, 767, 800, 908, 965, 1160
TspRI CASTG 6 cut(s) 21, 49, 354, 403, 694, 1034
Vha464I CTTAAG 1 cut(s) 619
VpaK11BI GGWCC 1 cut(s) 1151
XapI RAATTY 1 cut(s) 1184
XceI RCATGY 3 cut(s) 245, 545, 1052
XmiI GTMKAC 1 cut(s) 546
XmnI GAANNNNTTC 1 cut(s) 842
XspI CTAG 4 cut(s) 77, 95, 287, 1189
Zsp2I ATGCAT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.