Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006406

Physical Location & Seq

Genomic Coordinates Reverse (-)

47498750 .. 47500748

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG258700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGAATTGGATTTCAATTGATGAACTCAGTGGAGGAGTGGCTGCTGAGAAAAGGAGCACAGTACACATTCCTGGCCACTGAAAGGAACAACACCGCCTCTACAAATCTATTCACTTCCAAATGCAATTACGTGAACATCAGCTCACTAATCATATTTGTGCAACCAATTTGTTCATCTGCAAAACATCTGCTGCCTCAAAATATTAAAATAGAGAAGTTGCATGTAGACCAGGCAATTTCCCTGTACGAAAACAAGCTAAGAAGCAAAGACATATCTCCAACAGACATGGATGTGATCTTAAGGGAAAAGCTCAGCCTGGGCACTTGGGTGTGTTATTTCGAAGAACAGGGTTGGATCAACTTGGACAGTGAGGGAAACAACAAGGGAACAATCACCAAAACGCAAAGCTCTTGGGTCATCTTTAGCATATGGAATAATTGTGAACCTTATAAGCTTCATATAAGAAAGTCACATCCTCTAAGGTATTTTCATGCTACCTTAAACCATGCAAGAGAGAAAATCTTCTCCTGTTTGAAAATGCCTCAGAGTAAGGTCTCGGTGCAAAGCTCCCTTGGGTTTCTCTTTCTCTATGGGATTCATGGGGAGGGAGAGCAGCTTGGTGAGCTTATGAAATCTGTTTGGAACTTCGCATTAGGATTGGGGCAGAATGTGAAGGACAGCAAGTTGATTATAACTGAGCTGGGGCAGTGTGATCCTCTCATAAAGCATGTCCCAGACAATCCCAGCATTTCACGTATCCATGATCTCTGGTACGCGAAAAGTTTGAGCAGCCACCACCCTGATGACCAAGATGCTCTGCTAATGAAGGGTCCTTTGGGAAATGTGTTTGTTGATCCAAGGGAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

290

Amino Acids

33.06

Weight (kDa)

7.67

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19610 FvH4_4g19610 FvH4_4g19610 FvH4_4g19610 FvH4_4g19610
malus_domestica	MD13G1155300.v1.1
prunus_persica	Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1
pyrus_communis	pycom13g13210 pycom13g13220
rosa_chinensis	RchiOBHm_Chr4g0424871
rosa_laevigata	RLG00000007413
rosa_multiflora	Rmu_sc0006754.1_g000005
rosa_roxburghii	Rroxscaffold_5G00367090
rosa_rugosa	Rorug03G0364000.1 Rorug04G0199900 Rorug04G0200000 Rorug04G0200100 Rorug04G0200100 Rorug04G0200100
rosa_samantha	Rh4AG257600 Rh4BG263000 Rh4CG273900 Rh4DG258700
rosa_wichuraiana	Rw4G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	453, 695
AccI	GTMKAC	1 cut(s)	228
AccII	CGCG	1 cut(s)	779
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	3 cut(s)	365, 710, 851
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	866
AfaI	GTAC	3 cut(s)	65, 248, 776
AfiI	CCNNNNNNNGG	1 cut(s)	84
AflII	CTTAAG	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	17, 538
AjnI	CCWGG	3 cut(s)	72, 231, 318
AjuI	GAANNNNNNNTTGG	2 cut(s)	821, 853
AleI	CACNNNNGTG	1 cut(s)	329
AluBI	AGCT	9 cut(s)	144, 259, 313, 411, 457, 570, 619, 628, 703
AluI	AGCT	9 cut(s)	144, 259, 313, 411, 457, 570, 619, 628, 703
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	562
AlwI	GGATC	3 cut(s)	365, 710, 851
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	4 cut(s)	43, 193, 616, 792
ApoI	RAATTY	1 cut(s)	866
Asp700I	GAANNNNTTC	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	833
AsuHPI	GGTGA	2 cut(s)	388, 635
AsuII	TTCGAA	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	833
BaeGI	GKGCMC	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	4 cut(s)	30, 180, 628, 804
BciT130I	CCWGG	3 cut(s)	74, 233, 320
BciVI	GTATCC	1 cut(s)	770
BcoDI	GTCTC	1 cut(s)	562
BfaI	CTAG	1 cut(s)	871
BfrI	CTTAAG	1 cut(s)	301
BfuI	GTATCC	1 cut(s)	770
BisI	GCNGC	4 cut(s)	44, 194, 617, 793
BlpI	GCTNAGC	1 cut(s)	314
BlsI	GCNGC	4 cut(s)	45, 195, 618, 794
Bme1390I	CCNGG	3 cut(s)	74, 233, 320
Bme18I	GGWCC	1 cut(s)	833
BmgT120I	GGNCC	1 cut(s)	833
BmiI	GGNNCC	1 cut(s)	834
BmrFI	CCNGG	3 cut(s)	74, 233, 320
BmsI	GCATC	1 cut(s)	805
Bpu1102I	GCTNAGC	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	342
BsaAI	YACGTR	2 cut(s)	133, 758
BsaI	GGTCTC	1 cut(s)	562
BsaJI	CCNNGG	3 cut(s)	319, 574, 860
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
BseBI	CCWGG	3 cut(s)	74, 233, 320
BseDI	CCNNGG	3 cut(s)	319, 574, 860
BseGI	GGATG	2 cut(s)	298, 475
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMII	CTCAG	5 cut(s)	38, 42, 328, 560, 690
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	4 cut(s)	30, 180, 628, 804
BseYI	CCCAGC	2 cut(s)	703, 746
Bsh1236I	CGCG	1 cut(s)	779
BshFI	GGCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	719
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	562
BsmFI	GGGAC	1 cut(s)	719
BsnI	GGCC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	562
Bsp119I	TTCGAA	1 cut(s)	342
Bsp1286I	GDGCHC	2 cut(s)	61, 326
Bsp143I	GATC	5 cut(s)	297, 357, 715, 766, 856
Bsp1720I	GCTNAGC	1 cut(s)	314
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	5 cut(s)	39, 41, 327, 559, 691
BspFNI	CGCG	1 cut(s)	779
BspLI	GGNNCC	1 cut(s)	834
BspPI	GGATC	3 cut(s)	365, 710, 851
BspT104I	TTCGAA	1 cut(s)	342
BspTI	CTTAAG	1 cut(s)	301
BspTNI	GGTCTC	1 cut(s)	562
BssECI	CCNNGG	3 cut(s)	319, 574, 860
BssMI	GATC	5 cut(s)	297, 357, 715, 766, 856
BssT1I	CCWWGG	2 cut(s)	574, 860
Bst2UI	CCWGG	3 cut(s)	74, 233, 320
Bst4CI	ACNGT	2 cut(s)	63, 371
BstAFI	CTTAAG	1 cut(s)	301
BstBAI	YACGTR	2 cut(s)	133, 758
BstBI	TTCGAA	1 cut(s)	342
BstDEI	CTNAG	7 cut(s)	28, 47, 260, 314, 482, 546, 699
BstF5I	GGATG	2 cut(s)	298, 475
BstFNI	CGCG	1 cut(s)	779
BstKTI	GATC	5 cut(s)	300, 360, 718, 769, 859
BstMAI	GTCTC	1 cut(s)	562
BstMBI	GATC	5 cut(s)	297, 357, 715, 766, 856
BstMWI	GCNNNNNNNGC	1 cut(s)	625
BstNI	CCWGG	3 cut(s)	74, 233, 320
BstNSI	RCATGY	2 cut(s)	227, 734
BstSCI	CCNGG	3 cut(s)	72, 231, 318
BstSLI	GKGCMC	1 cut(s)	326
BstUI	CGCG	1 cut(s)	779
BstV1I	GCAGC	4 cut(s)	30, 180, 628, 804
BsuI	GTATCC	1 cut(s)	770
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	298, 475
BtsI	GCAGTG	1 cut(s)	716
BtsIMutI	CAGTG	4 cut(s)	36, 78, 376, 716
Cfr13I	GGNCC	1 cut(s)	833
Csp6I	GTAC	3 cut(s)	64, 247, 775
CviAII	CATG	7 cut(s)	224, 289, 494, 509, 602, 731, 764
CviQI	GTAC	3 cut(s)	64, 247, 775
DdeI	CTNAG	7 cut(s)	28, 47, 260, 314, 482, 546, 699
DpnI	GATC	5 cut(s)	299, 359, 717, 768, 858
DpnII	GATC	5 cut(s)	297, 357, 715, 766, 856
EaeI	YGGCCR	1 cut(s)	75
Eco130I	CCWWGG	2 cut(s)	574, 860
Eco31I	GGTCTC	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	833
EcoO109I	RGGNCCY	1 cut(s)	833
EcoRI	GAATTC	1 cut(s)	866
EcoRII	CCWGG	3 cut(s)	72, 231, 318
EcoT14I	CCWWGG	2 cut(s)	574, 860
ErhI	CCWWGG	2 cut(s)	574, 860
FaeI	CATG	7 cut(s)	227, 292, 497, 512, 605, 734, 767
FaqI	GGGAC	1 cut(s)	719
FatI	CATG	7 cut(s)	223, 288, 493, 508, 601, 730, 763
FauNDI	CATATG	1 cut(s)	431
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	4 cut(s)	44, 194, 617, 793
FokI	GGATG	2 cut(s)	305, 462
Fsp4HI	GCNGC	4 cut(s)	44, 194, 617, 793
FspBI	CTAG	1 cut(s)	871
GluI	GCNGC	4 cut(s)	44, 194, 617, 793
GsaI	CCCAGC	2 cut(s)	707, 750
HaeIII	GGCC	1 cut(s)	77
Hin1II	CATG	7 cut(s)	227, 292, 497, 512, 605, 734, 767
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	1 cut(s)	598
HphI	GGTGA	2 cut(s)	388, 635
Hpy166II	GTNNAC	4 cut(s)	66, 136, 229, 446
Hpy188I	TCNGA	1 cut(s)	549
Hpy8I	GTNNAC	4 cut(s)	66, 136, 229, 446
HpyAV	CCTTC	2 cut(s)	670, 823
HpyCH4III	ACNGT	2 cut(s)	63, 371
HpyCH4IV	ACGT	2 cut(s)	132, 757
HpyCH4V	TGCA	6 cut(s)	126, 163, 182, 223, 512, 565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	625
HpyF3I	CTNAG	7 cut(s)	28, 47, 260, 314, 482, 546, 699
HpySE526I	ACGT	2 cut(s)	132, 757
Hsp92II	CATG	7 cut(s)	227, 292, 497, 512, 605, 734, 767
Kzo9I	GATC	5 cut(s)	297, 357, 715, 766, 856
LmnI	GCTCC	2 cut(s)	56, 575
Lsp1109I	GCAGC	4 cut(s)	30, 180, 628, 804
LweI	GCATC	1 cut(s)	805
MaeI	CTAG	1 cut(s)	871
MaeII	ACGT	2 cut(s)	132, 757
MaeIII	GTNAC	1 cut(s)	471
MalI	GATC	5 cut(s)	299, 359, 717, 768, 858
MboI	GATC	5 cut(s)	297, 357, 715, 766, 856
MboII	GAAGA	2 cut(s)	356, 517
MfeI	CAATTG	1 cut(s)	17
MhlI	GDGCHC	2 cut(s)	61, 326
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	7 cut(s)	6, 17, 127, 168, 237, 439, 866
MluNI	TGGCCA	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	305, 335
MnlI	CCTC	8 cut(s)	28, 109, 207, 367, 489, 555, 601, 729
Mox20I	TGGCCA	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	3 cut(s)	207, 302, 503
MslI	CAYNNNNRTG	4 cut(s)	158, 293, 329, 804
Msp20I	TGGCCA	1 cut(s)	77
MspCI	CTTAAG	1 cut(s)	301
MspR9I	CCNGG	3 cut(s)	74, 233, 320
MunI	CAATTG	1 cut(s)	17
MvaI	CCWGG	3 cut(s)	74, 233, 320
MvnI	CGCG	1 cut(s)	779
MwoI	GCNNNNNNNGC	1 cut(s)	625
NdeI	CATATG	1 cut(s)	431
NdeII	GATC	5 cut(s)	297, 357, 715, 766, 856
NlaIII	CATG	7 cut(s)	227, 292, 497, 512, 605, 734, 767
NlaIV	GGNNCC	1 cut(s)	834
NmuCI	GTSAC	1 cut(s)	471
NspI	RCATGY	2 cut(s)	227, 734
NspV	TTCGAA	1 cut(s)	342
OliI	CACNNNNGTG	1 cut(s)	329
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	1 cut(s)	598
PkrI	GCNGC	4 cut(s)	45, 195, 618, 794
Ppu21I	YACGTR	2 cut(s)	133, 758
PpuMI	RGGWCCY	1 cut(s)	833
PsiI	TTATAA	2 cut(s)	453, 695
Psp5II	RGGWCCY	1 cut(s)	833
Psp6I	CCWGG	3 cut(s)	72, 231, 318
PspFI	CCCAGC	2 cut(s)	703, 746
PspGI	CCWGG	3 cut(s)	72, 231, 318
PspN4I	GGNNCC	1 cut(s)	834
PspPI	GGNCC	1 cut(s)	833
PspPPI	RGGWCCY	1 cut(s)	833
RsaI	GTAC	3 cut(s)	65, 248, 776
RsaNI	GTAC	3 cut(s)	64, 247, 775
RseI	CAYNNNNRTG	4 cut(s)	158, 293, 329, 804
SaqAI	TTAA	3 cut(s)	207, 302, 503
SatI	GCNGC	4 cut(s)	44, 194, 617, 793
Sau3AI	GATC	5 cut(s)	297, 357, 715, 766, 856
Sau96I	GGNCC	1 cut(s)	833
ScrFI	CCNGG	3 cut(s)	74, 233, 320
SduI	GDGCHC	2 cut(s)	61, 326
SfaNI	GCATC	1 cut(s)	805
SfuI	TTCGAA	1 cut(s)	342
SinI	GGWCC	1 cut(s)	833
SmiMI	CAYNNNNRTG	4 cut(s)	158, 293, 329, 804
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	7 cut(s)	6, 17, 127, 168, 237, 439, 866
SsiI	CCGC	1 cut(s)	96
SspI	AATATT	1 cut(s)	205
SspMI	CTAG	1 cut(s)	871
StyD4I	CCNGG	3 cut(s)	72, 231, 318
StyI	CCWWGG	2 cut(s)	574, 860
TaaI	ACNGT	2 cut(s)	63, 371
TaiI	ACGT	2 cut(s)	135, 760
TaqI	TCGA	1 cut(s)	342
TasI	AATT	7 cut(s)	6, 17, 127, 168, 237, 439, 866
TatI	WGTACW	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	598
Tru1I	TTAA	3 cut(s)	207, 302, 503
Tru9I	TTAA	3 cut(s)	207, 302, 503
TscAI	CASTG	4 cut(s)	36, 85, 376, 716
TseFI	GTSAC	1 cut(s)	471
TseI	GCWGC	4 cut(s)	43, 193, 616, 792
Tsp45I	GTSAC	1 cut(s)	471
TspDTI	ATGAA	7 cut(s)	38, 165, 449, 482, 590, 647, 842
TspRI	CASTG	4 cut(s)	36, 85, 376, 716
Vha464I	CTTAAG	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	833
XapI	RAATTY	1 cut(s)	866
XceI	RCATGY	2 cut(s)	227, 734
XmiI	GTMKAC	1 cut(s)	228
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.