Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006754.1

Orthogroup ID

OG0006406

Physical Location & Seq

Genomic Coordinates Forward (+)

28501 .. 29768

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006754.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

atgtttggaaattgccagcaggtagcacagctgcttgaaaatgaggagcttgtcggagtggttcgaggatgcatcaagcatgtggggactggttttgggggagtatatgtgatgggttgcatcctaggccttcgagtgtctcccacacaccggcggatgggaattggatttcaattgatgaactcagtggaggagtggctgctgagaaaaggagcacagtacacattcctggccactgaaaggaacaacaccgcctctacaaatctattcacttccaaatgcaattatgtgaacatcagctcactaatcatatttgtgcaaccaatttgttcatctgcaaaacatctgctgcctcaaaatattaaaatagagaagttgcatgtagaccaggcaatttccctgtacgaaaacaagctaagaagcaaagacatatctccaacagacatggatgtgatcttaaaggaaaagctcagcctgggcacttgggtgtgttatttcgaagaacagggttggatcaacttggacagtgagggaaacaacaagggaacaatcaccaaaacgcaaagctcttgggtcatctttagcatatggaataattgtgaaccttacaagcttcatataagaaagtctcatcctctaaggtattttcatgctaccttaaaccatgcaagagagaaaatcttctcctgtttgaaaatgcctcagagtaaggtctcagtgcaaagctcccttgggtttctctttctctatgggattcatggggagggagagcagcttggtgagcttatgaaatctgtttggaacttcgcattaggattggggcagaatgtgaaggacagcaagttgattataactgagctggggcagtgtgatcctctcataaagcatgtcccagacaatcccagcatttcacgtatccatgatctctggtacgcgaaaagtttgagcagccaccacactgatgaccaagatgctctgctaatgaagggtcctttgggaaatgtgtttgttgatccaagggaattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

342

Amino Acids

38.64

Weight (kDa)

8.3

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19610 FvH4_4g19610 FvH4_4g19610 FvH4_4g19610 FvH4_4g19610
malus_domestica	MD13G1155300.v1.1
prunus_persica	Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1 Prupe.1G118400_v2.0.a1
pyrus_communis	pycom13g13210 pycom13g13220
rosa_chinensis	RchiOBHm_Chr4g0424871
rosa_laevigata	RLG00000007413
rosa_multiflora	Rmu_sc0006754.1_g000005
rosa_roxburghii	Rroxscaffold_5G00367090
rosa_rugosa	Rorug03G0364000.1 Rorug04G0199900 Rorug04G0200000 Rorug04G0200100 Rorug04G0200100 Rorug04G0200100
rosa_samantha	Rh4AG257600 Rh4BG263000 Rh4CG273900 Rh4DG258700
rosa_wichuraiana	Rw4G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	851
Acc36I	ACCTGC	1 cut(s)	10
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	1 cut(s)	935
AciI	CCGC	2 cut(s)	154, 252
AclWI	GGATC	3 cut(s)	521, 866, 1007
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	1022
AfaI	GTAC	3 cut(s)	221, 404, 932
AfiI	CCNNNNNNNGG	3 cut(s)	150, 157, 240
AgsI	TTSAA	3 cut(s)	38, 173, 694
AjnI	CCWGG	3 cut(s)	228, 387, 474
AjuI	GAANNNNNNNTTGG	2 cut(s)	977, 1009
AleI	CACNNNNGTG	1 cut(s)	485
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	3 cut(s)	144, 633, 718
AlwI	GGATC	3 cut(s)	521, 866, 1007
AoxI	GGCC	2 cut(s)	127, 231
ApeKI	GCWGC	5 cut(s)	31, 199, 349, 772, 948
ApoI	RAATTY	1 cut(s)	1022
Asp700I	GAANNNNTTC	1 cut(s)	680
AspA2I	CCTAGG	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	989
AsuHPI	GGTGA	2 cut(s)	544, 791
AsuII	TTCGAA	1 cut(s)	498
AvaII	GGWCC	1 cut(s)	989
AvrII	CCTAGG	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	482
BalI	TGGCCA	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	5 cut(s)	18, 186, 336, 784, 960
BccI	CCATC	2 cut(s)	106, 151
BciT130I	CCWGG	3 cut(s)	230, 389, 476
BciVI	GTATCC	1 cut(s)	926
BcoDI	GTCTC	3 cut(s)	144, 633, 718
BfaI	CTAG	2 cut(s)	125, 1027
BfuAI	ACCTGC	1 cut(s)	10
BfuI	GTATCC	1 cut(s)	926
BisI	GCNGC	5 cut(s)	32, 200, 350, 773, 949
BlnI	CCTAGG	1 cut(s)	124
BlpI	GCTNAGC	1 cut(s)	470
BlsI	GCNGC	5 cut(s)	33, 201, 351, 774, 950
Bme1390I	CCNGG	3 cut(s)	230, 389, 476
Bme18I	GGWCC	1 cut(s)	989
BmgT120I	GGNCC	1 cut(s)	989
BmiI	GGNNCC	1 cut(s)	990
BmrFI	CCNGG	3 cut(s)	230, 389, 476
BmsI	GCATC	4 cut(s)	59, 81, 129, 961
Bpu1102I	GCTNAGC	1 cut(s)	470
Bpu14I	TTCGAA	1 cut(s)	498
BsaAI	YACGTR	1 cut(s)	914
BsaI	GGTCTC	1 cut(s)	718
BsaJI	CCNNGG	4 cut(s)	124, 475, 730, 1016
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 157, 240
Bse118I	RCCGGY	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	94
BseBI	CCWGG	3 cut(s)	230, 389, 476
BseDI	CCNNGG	4 cut(s)	124, 475, 730, 1016
BseGI	GGATG	5 cut(s)	74, 120, 162, 454, 631
BseLI	CCNNNNNNNGG	3 cut(s)	150, 157, 240
BseMII	CTCAG	6 cut(s)	194, 198, 484, 716, 729, 846
BseNI	ACTGG	1 cut(s)	94
BseRI	GAGGAG	2 cut(s)	59, 206
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	5 cut(s)	18, 186, 336, 784, 960
BseYI	CCCAGC	2 cut(s)	859, 902
Bsh1236I	CGCG	1 cut(s)	935
BshFI	GGCC	2 cut(s)	129, 233
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	151
BslFI	GGGAC	2 cut(s)	100, 875
BslI	CCNNNNNNNGG	3 cut(s)	150, 157, 240
BsmAI	GTCTC	3 cut(s)	144, 633, 718
BsmFI	GGGAC	2 cut(s)	100, 875
BsnI	GGCC	2 cut(s)	129, 233
Bso31I	GGTCTC	1 cut(s)	718
Bsp119I	TTCGAA	1 cut(s)	498
Bsp1286I	GDGCHC	2 cut(s)	217, 482
Bsp143I	GATC	5 cut(s)	453, 513, 871, 922, 1012
Bsp1720I	GCTNAGC	1 cut(s)	470
BspACI	CCGC	2 cut(s)	154, 252
BspANI	GGCC	2 cut(s)	129, 233
BspCNI	CTCAG	6 cut(s)	195, 197, 483, 715, 728, 847
BspFNI	CGCG	1 cut(s)	935
BspLI	GGNNCC	1 cut(s)	990
BspMI	ACCTGC	1 cut(s)	10
BspPI	GGATC	3 cut(s)	521, 866, 1007
BspT104I	TTCGAA	1 cut(s)	498
BspTNI	GGTCTC	1 cut(s)	718
BsrFI	RCCGGY	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	4 cut(s)	124, 475, 730, 1016
BssMI	GATC	5 cut(s)	453, 513, 871, 922, 1012
BssT1I	CCWWGG	3 cut(s)	124, 730, 1016
Bst2UI	CCWGG	3 cut(s)	230, 389, 476
Bst4CI	ACNGT	2 cut(s)	219, 527
BstBAI	YACGTR	1 cut(s)	914
BstBI	TTCGAA	1 cut(s)	498
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	8 cut(s)	184, 203, 416, 470, 638, 702, 715, 855
BstF5I	GGATG	5 cut(s)	74, 120, 162, 454, 631
BstFNI	CGCG	1 cut(s)	935
BstKTI	GATC	5 cut(s)	456, 516, 874, 925, 1015
BstMAI	GTCTC	3 cut(s)	144, 633, 718
BstMBI	GATC	5 cut(s)	453, 513, 871, 922, 1012
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 781
BstNI	CCWGG	3 cut(s)	230, 389, 476
BstNSI	RCATGY	3 cut(s)	83, 383, 890
BstSCI	CCNGG	3 cut(s)	228, 387, 474
BstSLI	GKGCMC	1 cut(s)	482
BstUI	CGCG	1 cut(s)	935
BstV1I	GCAGC	5 cut(s)	18, 186, 336, 784, 960
BsuI	GTATCC	1 cut(s)	926
BsuRI	GGCC	2 cut(s)	129, 233
BtsCI	GGATG	5 cut(s)	74, 120, 162, 454, 631
BtsI	GCAGTG	1 cut(s)	872
BtsIMutI	CAGTG	6 cut(s)	192, 234, 532, 723, 872, 957
BveI	ACCTGC	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	989
Csp6I	GTAC	3 cut(s)	220, 403, 931
CviAII	CATG	8 cut(s)	80, 380, 445, 650, 665, 758, 887, 920
CviQI	GTAC	3 cut(s)	220, 403, 931
DdeI	CTNAG	8 cut(s)	184, 203, 416, 470, 638, 702, 715, 855
DpnI	GATC	5 cut(s)	455, 515, 873, 924, 1014
DpnII	GATC	5 cut(s)	453, 513, 871, 922, 1012
EaeI	YGGCCR	1 cut(s)	231
EciI	GGCGGA	1 cut(s)	169
Eco130I	CCWWGG	3 cut(s)	124, 730, 1016
Eco147I	AGGCCT	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	718
Eco47I	GGWCC	1 cut(s)	989
EcoO109I	RGGNCCY	1 cut(s)	989
EcoRI	GAATTC	1 cut(s)	1022
EcoRII	CCWGG	3 cut(s)	228, 387, 474
EcoT14I	CCWWGG	3 cut(s)	124, 730, 1016
EcoT22I	ATGCAT	1 cut(s)	74
ErhI	CCWWGG	3 cut(s)	124, 730, 1016
FaeI	CATG	8 cut(s)	83, 383, 448, 653, 668, 761, 890, 923
FaqI	GGGAC	2 cut(s)	100, 875
FatI	CATG	8 cut(s)	79, 379, 444, 649, 664, 757, 886, 919
FauNDI	CATATG	1 cut(s)	587
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	5 cut(s)	32, 200, 350, 773, 949
FokI	GGATG	5 cut(s)	81, 107, 169, 461, 618
Fsp4HI	GCNGC	5 cut(s)	32, 200, 350, 773, 949
FspBI	CTAG	2 cut(s)	125, 1027
GluI	GCNGC	5 cut(s)	32, 200, 350, 773, 949
GsaI	CCCAGC	2 cut(s)	863, 906
HaeIII	GGCC	2 cut(s)	129, 233
HapII	CCGG	1 cut(s)	151
Hin1II	CATG	8 cut(s)	83, 383, 448, 653, 668, 761, 890, 923
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	1 cut(s)	754
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	2 cut(s)	544, 791
Hpy166II	GTNNAC	4 cut(s)	222, 292, 385, 602
Hpy188I	TCNGA	2 cut(s)	56, 705
Hpy8I	GTNNAC	4 cut(s)	222, 292, 385, 602
HpyAV	CCTTC	3 cut(s)	140, 826, 979
HpyCH4III	ACNGT	2 cut(s)	219, 527
HpyCH4IV	ACGT	1 cut(s)	913
HpyCH4V	TGCA	8 cut(s)	72, 120, 282, 319, 338, 379, 668, 721
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 781
HpyF3I	CTNAG	8 cut(s)	184, 203, 416, 470, 638, 702, 715, 855
HpySE526I	ACGT	1 cut(s)	913
Hsp92II	CATG	8 cut(s)	83, 383, 448, 653, 668, 761, 890, 923
Kzo9I	GATC	5 cut(s)	453, 513, 871, 922, 1012
LmnI	GCTCC	3 cut(s)	46, 212, 731
Lsp1109I	GCAGC	5 cut(s)	18, 186, 336, 784, 960
LweI	GCATC	4 cut(s)	59, 81, 129, 961
MaeI	CTAG	2 cut(s)	125, 1027
MaeII	ACGT	1 cut(s)	913
MalI	GATC	5 cut(s)	455, 515, 873, 924, 1014
MboI	GATC	5 cut(s)	453, 513, 871, 922, 1012
MboII	GAAGA	2 cut(s)	512, 673
MfeI	CAATTG	1 cut(s)	173
MhlI	GDGCHC	2 cut(s)	217, 482
MlsI	TGGCCA	1 cut(s)	233
MluCI	AATT	8 cut(s)	10, 162, 173, 283, 324, 393, 595, 1022
MluNI	TGGCCA	1 cut(s)	233
MmeI	TCCRAC	3 cut(s)	34, 461, 491
Mox20I	TGGCCA	1 cut(s)	233
Mph1103I	ATGCAT	1 cut(s)	74
MroXI	GAANNNNTTC	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	233
MseI	TTAA	3 cut(s)	363, 458, 659
MslI	CAYNNNNRTG	4 cut(s)	314, 449, 485, 960
Msp20I	TGGCCA	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	3 cut(s)	230, 389, 476
MunI	CAATTG	1 cut(s)	173
MvaI	CCWGG	3 cut(s)	230, 389, 476
MvnI	CGCG	1 cut(s)	935
MwoI	GCNNNNNNNGC	2 cut(s)	126, 781
NdeI	CATATG	1 cut(s)	587
NdeII	GATC	5 cut(s)	453, 513, 871, 922, 1012
NlaIII	CATG	8 cut(s)	83, 383, 448, 653, 668, 761, 890, 923
NlaIV	GGNNCC	1 cut(s)	990
NsiI	ATGCAT	1 cut(s)	74
NspI	RCATGY	3 cut(s)	83, 383, 890
NspV	TTCGAA	1 cut(s)	498
OliI	CACNNNNGTG	1 cut(s)	485
PceI	AGGCCT	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	680
PfeI	GAWTC	1 cut(s)	754
PkrI	GCNGC	5 cut(s)	33, 201, 351, 774, 950
Ppu21I	YACGTR	1 cut(s)	914
PpuMI	RGGWCCY	1 cut(s)	989
PsiI	TTATAA	1 cut(s)	851
Psp5II	RGGWCCY	1 cut(s)	989
Psp6I	CCWGG	3 cut(s)	228, 387, 474
PspFI	CCCAGC	2 cut(s)	859, 902
PspGI	CCWGG	3 cut(s)	228, 387, 474
PspN4I	GGNNCC	1 cut(s)	990
PspPI	GGNCC	1 cut(s)	989
PspPPI	RGGWCCY	1 cut(s)	989
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	3 cut(s)	221, 404, 932
RsaNI	GTAC	3 cut(s)	220, 403, 931
RseI	CAYNNNNRTG	4 cut(s)	314, 449, 485, 960
SaqAI	TTAA	3 cut(s)	363, 458, 659
SatI	GCNGC	5 cut(s)	32, 200, 350, 773, 949
Sau3AI	GATC	5 cut(s)	453, 513, 871, 922, 1012
Sau96I	GGNCC	1 cut(s)	989
ScrFI	CCNGG	3 cut(s)	230, 389, 476
SduI	GDGCHC	2 cut(s)	217, 482
SfaNI	GCATC	4 cut(s)	59, 81, 129, 961
SfuI	TTCGAA	1 cut(s)	498
SgrAI	CRCCGGYG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	989
SmiMI	CAYNNNNRTG	4 cut(s)	314, 449, 485, 960
Sse9I	AATT	8 cut(s)	10, 162, 173, 283, 324, 393, 595, 1022
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	2 cut(s)	154, 252
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	2 cut(s)	125, 1027
StuI	AGGCCT	1 cut(s)	129
StyD4I	CCNGG	3 cut(s)	228, 387, 474
StyI	CCWWGG	3 cut(s)	124, 730, 1016
TaaI	ACNGT	2 cut(s)	219, 527
TaiI	ACGT	1 cut(s)	916
TaqI	TCGA	3 cut(s)	64, 133, 498
TasI	AATT	8 cut(s)	10, 162, 173, 283, 324, 393, 595, 1022
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	754
Tru1I	TTAA	3 cut(s)	363, 458, 659
Tru9I	TTAA	3 cut(s)	363, 458, 659
TscAI	CASTG	6 cut(s)	192, 241, 532, 723, 872, 964
TseI	GCWGC	5 cut(s)	31, 199, 349, 772, 948
TspDTI	ATGAA	7 cut(s)	194, 321, 605, 638, 746, 803, 998
TspRI	CASTG	6 cut(s)	192, 241, 532, 723, 872, 964
VpaK11BI	GGWCC	1 cut(s)	989
XapI	RAATTY	1 cut(s)	1022
XceI	RCATGY	3 cut(s)	83, 383, 890
XmaJI	CCTAGG	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	384
XmnI	GAANNNNTTC	1 cut(s)	680
XspI	CTAG	2 cut(s)	125, 1027
Zsp2I	ATGCAT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.