Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007709

Physical Location & Seq

Genomic Coordinates Forward (+)

28107703 .. 28108287

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCAGCCAAGCCCTTCTCCTTCTTCTTCTTCTTCTTCTTCCTCTCTCTCCTACCTTTGCTTATCTCTGCTTCAAACCCAGACTCCGCGCCGCTCTTAGCCTTCAAGGCCACGTCGGACGCCTCCAACCTTCTCGCCACGTGGAACTCCACCTCCGACCCCTGCAACTTCGCCGGAGTCTCCTGCACCCGCAACCGCGTCTCCCGCCTCGACCTCCGCGGCTCCTTCGCCGCGTTAACCGGGCTGACTCAGCTTCGAGTTCTCAGCCTGAAGCGTAACCGTCTCTCCGGCCCCATTCCCGACCTCTCTAACCTCACCTCCCTCAAGCTCCTCTTCCTCTCCTACAACGACTTCTCCGGCGAGTTTCCCGCCTCCCTGACGTCACTCTTCCGCCTTTACCGCCTCGATCTGGCGTACAACAACTTGACCGGTGATATTCCCGACAAGGTCAACCATTTGACTCACCTCCTCACTCTCCGCCTCGAAGCCAACCGATTCTCCGGCTCGATTTCCGGCCTCAACCTCCCGAATCTCCAGGAGTTCAGCGTGGCCGTTACATCAACAAGAGTTCTAACTTTCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 Pkinase Pkinase_Tyr

Protein Analysis

195

Amino Acids

21.41

Weight (kDa)

9.38

Isoelectric Point (pI)

21.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 63	6.2e-09	Leucine rich repeat N-terminal domain
LRR_14	PF23598	78 - 186	4.6e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68400
fragaria_vesca	FvH4_4g26930 FvH4_4g26970
malus_domestica	MD13G1036800.v1.1 MD13G1038100.v1.1 MD13G1038400.v1.1 MD13G1260200.v1.1
prunus_persica	Prupe.1G314900_v2.0.a1
pyrus_communis	pycom13g03310 pycom13g03320 pycom16g03410
rosa_chinensis	RchiOBHm_Chr4g0434721
rosa_laevigata	RLG00000006655
rosa_multiflora	Rmu_sc0004538.1_g000001 Rmu_sc0008439.1_g000001 Rmu_sc0017904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375930
rosa_rugosa	Rorug04G0277800
rosa_samantha	Rh4AG334200 Rh4BG342600 Rh4CG357000 Rh4DG336300
rosa_wichuraiana	Rw4G029010 Rw4G029150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	383
AccBSI	CCGCTC	1 cut(s)	94
AccII	CGCG	4 cut(s)	89, 198, 219, 233
AcoI	YGGCCR	1 cut(s)	549
AcuI	CTGAAG	1 cut(s)	290
AcvI	CACGTG	1 cut(s)	141
AcyI	GRCGYC	2 cut(s)	120, 380
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	409
AgeI	ACCGGT	1 cut(s)	428
AgsI	TTSAA	2 cut(s)	75, 106
AjiI	CACGTC	1 cut(s)	114
AjnI	CCWGG	1 cut(s)	534
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
AluBI	AGCT	2 cut(s)	253, 328
AluI	AGCT	2 cut(s)	253, 328
Alw26I	GTCTC	3 cut(s)	184, 205, 287
AoxI	GGCC	4 cut(s)	108, 289, 514, 549
ApeKI	GCWGC	1 cut(s)	5
AsiGI	ACCGGT	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	290
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	3 cut(s)	307, 443, 455
AsuII	TTCGAA	1 cut(s)	579
BbrPI	CACGTG	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	536
BciT130I	CCWGG	1 cut(s)	536
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	3 cut(s)	184, 205, 287
BglI	GCCNNNNNGGC	1 cut(s)	107
BisI	GCNGC	4 cut(s)	6, 92, 220, 231
BlsI	GCNGC	4 cut(s)	7, 93, 221, 232
Bme1390I	CCNGG	2 cut(s)	241, 536
BmgBI	CACGTC	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	2 cut(s)	223, 292
BmrFI	CCNGG	2 cut(s)	241, 536
BpmI	CTGGAG	1 cut(s)	518
Bpu14I	TTCGAA	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	241
BsaAI	YACGTR	1 cut(s)	141
BsaHI	GRCGYC	2 cut(s)	120, 380
BsaJI	CCNNGG	1 cut(s)	217
BsaWI	WCCGGW	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse118I	RCCGGY	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMII	CTCAG	2 cut(s)	263, 277
BseRI	GAGGAG	2 cut(s)	320, 458
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	169
Bsh1236I	CGCG	4 cut(s)	89, 198, 219, 233
BshFI	GGCC	4 cut(s)	110, 291, 516, 551
BshTI	ACCGGT	1 cut(s)	428
BsiSI	CCGG	7 cut(s)	174, 240, 288, 357, 429, 501, 513
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	3 cut(s)	184, 205, 287
BsmBI	CGTCTC	2 cut(s)	205, 287
BsnI	GGCC	4 cut(s)	110, 291, 516, 551
Bsp119I	TTCGAA	1 cut(s)	579
Bsp143I	GATC	1 cut(s)	406
BspANI	GGCC	4 cut(s)	110, 291, 516, 551
BspCNI	CTCAG	2 cut(s)	262, 276
BspFNI	CGCG	4 cut(s)	89, 198, 219, 233
BspLI	GGNNCC	2 cut(s)	223, 292
BspT104I	TTCGAA	1 cut(s)	579
BsrBI	CCGCTC	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	428
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	1 cut(s)	406
BssNI	GRCGYC	2 cut(s)	120, 380
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	2 cut(s)	338, 392
BstACI	GRCGYC	2 cut(s)	120, 380
BstBAI	YACGTR	1 cut(s)	141
BstBI	TTCGAA	1 cut(s)	579
BstDEI	CTNAG	3 cut(s)	97, 249, 263
BstDSI	CCRYGG	1 cut(s)	217
BstFNI	CGCG	4 cut(s)	89, 198, 219, 233
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	3 cut(s)	184, 205, 287
BstMBI	GATC	1 cut(s)	406
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 204, 250, 399
BstNI	CCWGG	1 cut(s)	536
BstSCI	CCNGG	2 cut(s)	239, 534
BstUI	CGCG	4 cut(s)	89, 198, 219, 233
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	4 cut(s)	110, 291, 516, 551
BtgI	CCRYGG	1 cut(s)	217
BtrI	CACGTC	1 cut(s)	114
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	290
Cfr42I	CCGCGG	1 cut(s)	220
CseI	GACGC	2 cut(s)	128, 187
Csp6I	GTAC	1 cut(s)	415
CspAI	ACCGGT	1 cut(s)	428
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	3 cut(s)	97, 249, 263
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	2 cut(s)	338, 392
EarI	CTCTTC	2 cut(s)	338, 392
EciI	GGCGGA	2 cut(s)	380, 467
Eco57I	CTGAAG	1 cut(s)	290
Eco72I	CACGTG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	534
Esp3I	CGTCTC	2 cut(s)	205, 287
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FauI	CCCGC	3 cut(s)	197, 212, 376
Fnu4HI	GCNGC	4 cut(s)	6, 92, 220, 231
Fsp4HI	GCNGC	4 cut(s)	6, 92, 220, 231
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	4 cut(s)	6, 92, 220, 231
GsuI	CTGGAG	1 cut(s)	518
HaeIII	GGCC	4 cut(s)	110, 291, 516, 551
HapII	CCGG	7 cut(s)	174, 240, 288, 357, 429, 501, 513
HgaI	GACGC	2 cut(s)	128, 187
HhaI	GCGC	1 cut(s)	91
Hin1I	GRCGYC	2 cut(s)	120, 380
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	2 cut(s)	237, 451
HindII	GTYRAC	2 cut(s)	237, 451
HinfI	GANTC	6 cut(s)	83, 177, 247, 460, 495, 529
HpaI	GTTAAC	1 cut(s)	237
HpaII	CCGG	7 cut(s)	174, 240, 288, 357, 429, 501, 513
HphI	GGTGA	3 cut(s)	307, 443, 455
Hpy166II	GTNNAC	2 cut(s)	237, 451
Hpy188I	TCNGA	2 cut(s)	118, 157
Hpy188III	TCNNGA	3 cut(s)	299, 440, 526
Hpy8I	GTNNAC	2 cut(s)	237, 451
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	5 cut(s)	25, 31, 112, 140, 235
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	3 cut(s)	113, 140, 380
HpyCH4V	TGCA	2 cut(s)	165, 186
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 204, 250, 399
HpyF3I	CTNAG	3 cut(s)	97, 249, 263
HpySE526I	ACGT	3 cut(s)	113, 140, 380
Hsp92I	GRCGYC	2 cut(s)	120, 380
HspAI	GCGC	1 cut(s)	89
KspAI	GTTAAC	1 cut(s)	237
KspI	CCGCGG	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	406
LmnI	GCTCC	2 cut(s)	227, 333
Lsp1109I	GCAGC	1 cut(s)	17
MaeII	ACGT	3 cut(s)	113, 140, 380
MaeIII	GTNAC	3 cut(s)	275, 381, 553
MalI	GATC	1 cut(s)	408
MbiI	CCGCTC	1 cut(s)	94
MboI	GATC	1 cut(s)	406
MboII	GAAGA	8 cut(s)	16, 19, 22, 25, 28, 31, 325, 379
MlyI	GAGTC	4 cut(s)	77, 186, 241, 454
MmeI	TCCRAC	3 cut(s)	96, 150, 180
MseI	TTAA	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	7 cut(s)	174, 240, 288, 357, 429, 501, 513
MspR9I	CCNGG	2 cut(s)	241, 536
MvaI	CCWGG	1 cut(s)	536
MvnI	CGCG	4 cut(s)	89, 198, 219, 233
MwoI	GCNNNNNNNGC	4 cut(s)	107, 204, 250, 399
NciI	CCSGG	1 cut(s)	241
NdeII	GATC	1 cut(s)	406
NlaIV	GGNNCC	2 cut(s)	223, 292
NmuCI	GTSAC	1 cut(s)	381
NspV	TTCGAA	1 cut(s)	579
PfeI	GAWTC	2 cut(s)	495, 529
PflFI	GACNNNGTC	1 cut(s)	446
PfoI	TCCNGGA	1 cut(s)	534
PinAI	ACCGGT	1 cut(s)	428
PkrI	GCNGC	4 cut(s)	7, 93, 221, 232
PleI	GAGTC	4 cut(s)	77, 185, 241, 454
PmaCI	CACGTG	1 cut(s)	141
PmlI	CACGTG	1 cut(s)	141
PpsI	GAGTC	4 cut(s)	77, 185, 241, 454
Ppu21I	YACGTR	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	534
PspCI	CACGTG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	2 cut(s)	223, 292
PspPI	GGNCC	1 cut(s)	290
PsyI	GACNNNGTC	1 cut(s)	446
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SacII	CCGCGG	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	4 cut(s)	6, 92, 220, 231
Sau3AI	GATC	1 cut(s)	406
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	4 cut(s)	77, 186, 241, 454
ScrFI	CCNGG	2 cut(s)	241, 536
Sfr303I	CCGCGG	1 cut(s)	220
SfuI	TTCGAA	1 cut(s)	579
SgrBI	CCGCGG	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
StyD4I	CCNGG	2 cut(s)	239, 534
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	3 cut(s)	116, 143, 383
TaqI	TCGA	6 cut(s)	210, 256, 405, 483, 506, 579
TauI	GCSGC	3 cut(s)	94, 222, 233
TfiI	GAWTC	2 cut(s)	495, 529
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TseFI	GTSAC	1 cut(s)	381
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	381
Tth111I	GACNNNGTC	1 cut(s)	446
ZraI	GACGTC	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.