Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007709

Physical Location & Seq

Genomic Coordinates Forward (+)

31817901 .. 31818203

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1260200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGTGTCATTCGAAGGAGTGAAGCGTTTCAAGCTCAAGGACTTGCTCAGAGCCTCCCCAGAGATGTTGGGGAAAGGCGGGTTCGGGATGGCGTACAAGGCAGTTCTTTACGATGGCAATGTGAGGGCGATTAAGAGGCTCAATGATGCTCAGATTGGCGAGAAGACTCAGTTCGAGCAGCACATGGCAGTACTGGGGCGACTCAGCCATCCCAACATTGTGAGCTTGAAGGCTTATTACTTCGCATGGGAGGAGAAATTGTTGGTGTATGATTACATGCCCAATGGCTGCCTGTTCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 Pkinase Pkinase_Tyr

Protein Analysis

101

Amino Acids

11.38

Weight (kDa)

9.27

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	21 - 99	6.4e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	21 - 98	1.6e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68400
fragaria_vesca	FvH4_4g26930 FvH4_4g26970
malus_domestica	MD13G1036800.v1.1 MD13G1038100.v1.1 MD13G1038400.v1.1 MD13G1260200.v1.1
prunus_persica	Prupe.1G314900_v2.0.a1
pyrus_communis	pycom13g03310 pycom13g03320 pycom16g03410
rosa_chinensis	RchiOBHm_Chr4g0434721
rosa_laevigata	RLG00000006655
rosa_multiflora	Rmu_sc0004538.1_g000001 Rmu_sc0008439.1_g000001 Rmu_sc0017904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375930
rosa_rugosa	Rorug04G0277800
rosa_samantha	Rh4AG334200 Rh4BG342600 Rh4CG357000 Rh4DG336300
rosa_wichuraiana	Rw4G029010 Rw4G029150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	78
AfaI	GTAC	2 cut(s)	95, 192
AgsI	TTSAA	2 cut(s)	31, 229
AluBI	AGCT	2 cut(s)	34, 225
AluI	AGCT	2 cut(s)	34, 225
ApeKI	GCWGC	2 cut(s)	178, 288
Asp700I	GAANNNNTTC	1 cut(s)	26
AsuII	TTCGAA	1 cut(s)	12
BarI	GAAGNNNNNNTAC	2 cut(s)	221, 253
BbsI	GAAGAC	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	190, 275
BccI	CCATC	3 cut(s)	82, 107, 216
BisI	GCNGC	2 cut(s)	179, 289
BlsI	GCNGC	2 cut(s)	180, 290
BmcAI	AGTACT	1 cut(s)	192
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	136
BmuI	ACTGGG	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	170
Bpu14I	TTCGAA	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	20
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bse1I	ACTGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	124
BseGI	GGATG	2 cut(s)	93, 208
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	4 cut(s)	61, 164, 182, 217
BseNI	ACTGG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	190, 275
Bsp119I	TTCGAA	1 cut(s)	12
BspACI	CCGC	1 cut(s)	78
BspCNI	CTCAG	4 cut(s)	60, 163, 181, 216
BspT104I	TTCGAA	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	198
BstBI	TTCGAA	1 cut(s)	12
BstDEI	CTNAG	4 cut(s)	47, 150, 168, 203
BstF5I	GGATG	2 cut(s)	93, 208
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 98
BstNSI	RCATGY	1 cut(s)	280
BstV1I	GCAGC	2 cut(s)	190, 275
BstV2I	GAAGAC	1 cut(s)	170
BtsCI	GGATG	2 cut(s)	93, 208
Csp6I	GTAC	2 cut(s)	94, 191
CviAII	CATG	3 cut(s)	184, 246, 277
CviJI	RGCY	7 cut(s)	34, 53, 139, 207, 225, 233, 288
CviKI_1	RGCY	7 cut(s)	34, 53, 139, 207, 225, 233, 288
CviQI	GTAC	2 cut(s)	94, 191
DdeI	CTNAG	4 cut(s)	47, 150, 168, 203
FaeI	CATG	3 cut(s)	187, 249, 280
FaiI	YATR	4 cut(s)	185, 247, 270, 278
FatI	CATG	3 cut(s)	183, 245, 276
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	2 cut(s)	179, 289
FokI	GGATG	2 cut(s)	100, 195
Fsp4HI	GCNGC	2 cut(s)	179, 289
GluI	GCNGC	2 cut(s)	179, 289
Hin1II	CATG	3 cut(s)	187, 249, 280
HinfI	GANTC	2 cut(s)	166, 201
Hpy188I	TCNGA	2 cut(s)	50, 153
Hpy188III	TCNNGA	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	8, 223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 98
HpyF3I	CTNAG	4 cut(s)	47, 150, 168, 203
Hsp92II	CATG	3 cut(s)	187, 249, 280
LpnPI	CCDG	2 cut(s)	72, 179
Lsp1109I	GCAGC	2 cut(s)	190, 275
LweI	GCATC	1 cut(s)	136
MboII	GAAGA	1 cut(s)	175
MluCI	AATT	1 cut(s)	257
MlyI	GAGTC	2 cut(s)	160, 195
MnlI	CCTC	4 cut(s)	64, 117, 129, 244
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	31, 98
NlaIII	CATG	3 cut(s)	187, 249, 280
NspI	RCATGY	1 cut(s)	280
NspV	TTCGAA	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	180, 290
PleI	GAGTC	2 cut(s)	160, 195
PpsI	GAGTC	2 cut(s)	160, 195
RsaI	GTAC	2 cut(s)	95, 192
RsaNI	GTAC	2 cut(s)	94, 191
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	2 cut(s)	179, 289
ScaI	AGTACT	1 cut(s)	192
SchI	GAGTC	2 cut(s)	160, 195
SetI	ASST	2 cut(s)	36, 227
SfaNI	GCATC	1 cut(s)	136
SfuI	TTCGAA	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	1 cut(s)	257
SsiI	CCGC	1 cut(s)	78
TaqI	TCGA	2 cut(s)	12, 174
TasI	AATT	1 cut(s)	257
TatI	WGTACW	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseI	GCWGC	2 cut(s)	178, 288
XceI	RCATGY	1 cut(s)	280
XmnI	GAANNNNTTC	1 cut(s)	26
ZrmI	AGTACT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.