Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007709

Physical Location & Seq

Genomic Coordinates Forward (+)

2609975 .. 2610651

Gene Structure 677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1038100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGATTGCAGAATCCCTAGGATCCCTAGGGAACTGCTCAGGAGAGGATCTGGTTCTTAAACTTATACCCAAGAAATTTCAATCGTCTCCCTCACTCACTCTCTCTGCTCTCACTTGCAGAGAGCCCATGGCAGCCACGGCCGCCGTGGCCACTCTTCTCCTCACGAGCTTCTTCTTCGCTGCTCTCCACGTCTCTTCGAATCCAGATACCAAACCTCTCCTATCATTCAAAGCAACGTCGGACGCATCCAACAAGCTCACCACGTGGAACTCCACCTCCGTTGACCCGTGCACCTGGACCGGCGTCTCCTGCACCAACAACCGAGTCTCCCGACTTGTCCTCGAGAACCTCGACCTCCGCGGCTCGTTCCAGCCACTCACCGCGCTAACTCAGCTCCGAGTTCTGAGCCTCAAGCGTAACCGCCTCTCCTGCCCCATTCCGGACCTCTCCAACTTCACCGCCCTCAAACTCTTATTCCTCTCCTACAACGAACTCTCCGGCAACTTTCCAGCCTCCGTGTCCTCTCTCTTCCGTCTCTACCGCCTCGATCTGTCCTACAACAACTTATCCGGCGAGATTCCCGCAACGGTCAACCATTTGAATCATCTTCTCACTCTCCAGCTCGAGGCGAACCGTTTCTCCGGTTCGGAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 Pkinase Pkinase_Tyr

Protein Analysis

219

Amino Acids

23.73

Weight (kDa)

8.65

Isoelectric Point (pI)

27.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	67 - 105	4.2e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	124 - 209	3.1e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68400
fragaria_vesca	FvH4_4g26930 FvH4_4g26970
malus_domestica	MD13G1036800.v1.1 MD13G1038100.v1.1 MD13G1038400.v1.1 MD13G1260200.v1.1
prunus_persica	Prupe.1G314900_v2.0.a1
pyrus_communis	pycom13g03310 pycom13g03320 pycom16g03410
rosa_chinensis	RchiOBHm_Chr4g0434721
rosa_laevigata	RLG00000006655
rosa_multiflora	Rmu_sc0004538.1_g000001 Rmu_sc0008439.1_g000001 Rmu_sc0017904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375930
rosa_rugosa	Rorug04G0277800
rosa_samantha	Rh4AG334200 Rh4BG342600 Rh4CG357000 Rh4DG336300
rosa_wichuraiana	Rw4G029010 Rw4G029150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	360, 383
AccIII	TCCGGA	1 cut(s)	439
AciI	CCGC	8 cut(s)	141, 358, 360, 381, 421, 459, 541, 582
AclWI	GGATC	3 cut(s)	15, 28, 54
AcoI	YGGCCR	2 cut(s)	138, 147
AcsI	RAATTY	1 cut(s)	74
AcvI	CACGTG	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	303
AdeI	CACNNNGTG	1 cut(s)	264
AfiI	CCNNNNNNNGG	2 cut(s)	439, 625
AgsI	TTSAA	3 cut(s)	80, 229, 601
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	293
AloI	GAACNNNNNNTCC	4 cut(s)	260, 292, 623, 655
AluBI	AGCT	4 cut(s)	168, 256, 394, 622
AluI	AGCT	4 cut(s)	168, 256, 394, 622
Alw21I	GWGCWC	1 cut(s)	293
Alw26I	GTCTC	5 cut(s)	90, 196, 310, 331, 539
Alw44I	GTGCAC	1 cut(s)	289
AlwI	GGATC	3 cut(s)	15, 28, 54
Ama87I	CYCGRG	2 cut(s)	341, 623
Aor13HI	TCCGGA	1 cut(s)	439
AoxI	GGCC	2 cut(s)	138, 147
ApaLI	GTGCAC	1 cut(s)	289
ApeKI	GCWGC	2 cut(s)	131, 179
ApoI	RAATTY	1 cut(s)	74
Asp700I	GAANNNNTTC	1 cut(s)	635
AspA2I	CCTAGG	2 cut(s)	16, 25
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	2 cut(s)	297, 442
AsuHPI	GGTGA	3 cut(s)	250, 370, 448
AsuII	TTCGAA	1 cut(s)	197
AvaI	CYCGRG	2 cut(s)	341, 623
AvaII	GGWCC	2 cut(s)	297, 442
AvrII	CCTAGG	2 cut(s)	16, 25
BaeGI	GKGCMC	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	149
BamHI	GGATCC	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	126
BauI	CACGAG	1 cut(s)	163
BbrPI	CACGTG	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	143, 166
BceAI	ACGGC	2 cut(s)	128, 153
BciT130I	CCWGG	1 cut(s)	295
BcoDI	GTCTC	5 cut(s)	90, 196, 310, 331, 539
BfaI	CTAG	2 cut(s)	17, 26
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	4 cut(s)	132, 141, 180, 361
BlnI	CCTAGG	2 cut(s)	16, 25
BlsI	GCNGC	4 cut(s)	133, 142, 181, 362
Bme1390I	CCNGG	1 cut(s)	295
Bme18I	GGWCC	2 cut(s)	297, 442
BmeT110I	CYCGRG	2 cut(s)	341, 623
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	297, 442
BmiI	GGNNCC	2 cut(s)	22, 651
BmrFI	CCNGG	1 cut(s)	295
BmsI	GCATC	1 cut(s)	254
BoxI	GACNNNNGTC	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	602
Bpu10I	CCTNAGC	1 cut(s)	37
Bpu14I	TTCGAA	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	264
BsaHI	GRCGYC	1 cut(s)	303
BsaJI	CCNNGG	6 cut(s)	16, 25, 126, 135, 144, 358
BsaWI	WCCGGW	2 cut(s)	439, 641
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 625
Bse118I	RCCGGY	1 cut(s)	299
BseAI	TCCGGA	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	6 cut(s)	16, 25, 126, 135, 144, 358
BseGI	GGATG	1 cut(s)	245
BseLI	CCNNNNNNNGG	2 cut(s)	439, 625
BseMII	CTCAG	3 cut(s)	51, 395, 404
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	293
BseX3I	CGGCCG	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	143, 166
BsgI	GTGCAG	1 cut(s)	295
Bsh1236I	CGCG	2 cut(s)	360, 383
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	140, 149
BsiEI	CGRYCG	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	293
BsiHKCI	CYCGRG	2 cut(s)	341, 623
BsiSI	CCGG	5 cut(s)	300, 440, 498, 570, 642
BslI	CCNNNNNNNGG	2 cut(s)	439, 625
BsmAI	GTCTC	5 cut(s)	90, 196, 310, 331, 539
BsmBI	CGTCTC	4 cut(s)	90, 196, 310, 539
BsnI	GGCC	2 cut(s)	140, 149
BsoBI	CYCGRG	2 cut(s)	341, 623
Bsp119I	TTCGAA	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	126, 293
Bsp13I	TCCGGA	1 cut(s)	439
Bsp143I	GATC	3 cut(s)	20, 46, 547
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	8 cut(s)	141, 358, 360, 381, 421, 459, 541, 582
BspANI	GGCC	2 cut(s)	140, 149
BspCNI	CTCAG	3 cut(s)	50, 396, 403
BspEI	TCCGGA	1 cut(s)	439
BspFNI	CGCG	2 cut(s)	360, 383
BspLI	GGNNCC	2 cut(s)	22, 651
BspPI	GGATC	3 cut(s)	15, 28, 54
BspT104I	TTCGAA	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	6 cut(s)	16, 25, 126, 135, 144, 358
BssMI	GATC	3 cut(s)	20, 46, 547
BssNI	GRCGYC	1 cut(s)	303
BssSI	CACGAG	1 cut(s)	163
BssT1I	CCWWGG	3 cut(s)	16, 25, 126
Bst2BI	CACGAG	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	2 cut(s)	589, 635
Bst6I	CTCTTC	3 cut(s)	159, 199, 533
BstACI	GRCGYC	1 cut(s)	303
BstBAI	YACGTR	1 cut(s)	264
BstBI	TTCGAA	1 cut(s)	197
BstDEI	CTNAG	3 cut(s)	37, 390, 404
BstDSI	CCRYGG	4 cut(s)	126, 135, 144, 358
BstF5I	GGATG	1 cut(s)	245
BstFNI	CGCG	2 cut(s)	360, 383
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	3 cut(s)	23, 49, 550
BstMAI	GTCTC	5 cut(s)	90, 196, 310, 331, 539
BstMBI	GATC	3 cut(s)	20, 46, 547
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	6 cut(s)	137, 140, 146, 309, 391, 429
BstNI	CCWGG	1 cut(s)	295
BstPAI	GACNNNNGTC	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	293
BstUI	CGCG	2 cut(s)	360, 383
BstV1I	GCAGC	2 cut(s)	143, 166
BstX2I	RGATCY	2 cut(s)	20, 46
BstYI	RGATCY	2 cut(s)	20, 46
BstZI	CGGCCG	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	140, 149
BtgI	CCRYGG	4 cut(s)	126, 135, 144, 358
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	245
CfoI	GCGC	1 cut(s)	385
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	297, 442
Cfr42I	CCGCGG	1 cut(s)	361
CseI	GACGC	2 cut(s)	251, 292
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	1 cut(s)	127
DdeI	CTNAG	3 cut(s)	37, 390, 404
DpnI	GATC	3 cut(s)	22, 48, 549
DpnII	GATC	3 cut(s)	20, 46, 547
DraIII	CACNNNGTG	1 cut(s)	264
EaeI	YGGCCR	2 cut(s)	138, 147
EagI	CGGCCG	1 cut(s)	138
Eam1104I	CTCTTC	3 cut(s)	159, 199, 533
EarI	CTCTTC	3 cut(s)	159, 199, 533
EclXI	CGGCCG	1 cut(s)	138
Eco130I	CCWWGG	3 cut(s)	16, 25, 126
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	297, 442
Eco52I	CGGCCG	1 cut(s)	138
Eco72I	CACGTG	1 cut(s)	264
Eco88I	CYCGRG	2 cut(s)	341, 623
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	3 cut(s)	16, 25, 126
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	3 cut(s)	16, 25, 126
Esp3I	CGTCTC	4 cut(s)	90, 196, 310, 539
FaeI	CATG	1 cut(s)	130
FaiI	YATR	3 cut(s)	65, 128, 655
FatI	CATG	1 cut(s)	126
FauI	CCCGC	1 cut(s)	589
Fnu4HI	GCNGC	4 cut(s)	132, 141, 180, 361
FokI	GGATG	1 cut(s)	232
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	4 cut(s)	132, 141, 180, 361
FspBI	CTAG	2 cut(s)	17, 26
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	4 cut(s)	132, 141, 180, 361
GsuI	CTGGAG	1 cut(s)	602
HaeIII	GGCC	2 cut(s)	140, 149
HapII	CCGG	5 cut(s)	300, 440, 498, 570, 642
HgaI	GACGC	2 cut(s)	251, 292
HhaI	GCGC	1 cut(s)	385
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	1 cut(s)	130
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	2 cut(s)	283, 592
HindII	GTYRAC	2 cut(s)	283, 592
HinfI	GANTC	5 cut(s)	11, 199, 324, 577, 601
HpaII	CCGG	5 cut(s)	300, 440, 498, 570, 642
HphI	GGTGA	3 cut(s)	250, 370, 448
Hpy166II	GTNNAC	3 cut(s)	283, 291, 592
Hpy188I	TCNGA	4 cut(s)	241, 398, 405, 649
Hpy188III	TCNNGA	6 cut(s)	39, 163, 203, 330, 343, 440
Hpy8I	GTNNAC	3 cut(s)	283, 291, 592
Hpy99I	CGWCG	1 cut(s)	241
HpyCH4III	ACNGT	2 cut(s)	589, 635
HpyCH4IV	ACGT	3 cut(s)	189, 236, 263
HpyCH4V	TGCA	4 cut(s)	8, 117, 291, 312
HpyF10VI	GCNNNNNNNGC	6 cut(s)	137, 140, 146, 309, 391, 429
HpyF3I	CTNAG	3 cut(s)	37, 390, 404
HpySE526I	ACGT	3 cut(s)	189, 236, 263
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	130
HspAI	GCGC	1 cut(s)	383
Kpn2I	TCCGGA	1 cut(s)	439
KspI	CCGCGG	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	20, 46, 547
LmnI	GCTCC	2 cut(s)	399, 649
Lsp1109I	GCAGC	2 cut(s)	143, 166
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	2 cut(s)	17, 26
MaeII	ACGT	3 cut(s)	189, 236, 263
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	3 cut(s)	22, 48, 549
MboI	GATC	3 cut(s)	20, 46, 547
MboII	GAAGA	6 cut(s)	146, 163, 166, 186, 520, 599
MflI	RGATCY	2 cut(s)	20, 46
MhlI	GDGCHC	2 cut(s)	126, 293
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	1 cut(s)	74
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	3 cut(s)	219, 273, 474
Mox20I	TGGCCA	1 cut(s)	149
MroI	TCCGGA	1 cut(s)	439
MroXI	GAANNNNTTC	1 cut(s)	635
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	57
Msp20I	TGGCCA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	360
MspI	CCGG	5 cut(s)	300, 440, 498, 570, 642
MspR9I	CCNGG	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	295
MvnI	CGCG	2 cut(s)	360, 383
MwoI	GCNNNNNNNGC	6 cut(s)	137, 140, 146, 309, 391, 429
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	3 cut(s)	20, 46, 547
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	2 cut(s)	22, 651
NspV	TTCGAA	1 cut(s)	197
PaeR7I	CTCGAG	2 cut(s)	341, 623
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PdmI	GAANNNNTTC	1 cut(s)	635
PfeI	GAWTC	4 cut(s)	11, 199, 577, 601
PkrI	GCNGC	4 cut(s)	133, 142, 181, 362
PleI	GAGTC	1 cut(s)	332
PmaCI	CACGTG	1 cut(s)	264
PmlI	CACGTG	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	332
Ppu21I	YACGTR	1 cut(s)	264
PshAI	GACNNNNGTC	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	293
PspCI	CACGTG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	22, 651
PspPI	GGNCC	2 cut(s)	297, 442
PspXI	VCTCGAGB	1 cut(s)	623
PsuI	RGATCY	2 cut(s)	20, 46
SacII	CCGCGG	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	4 cut(s)	132, 141, 180, 361
Sau3AI	GATC	3 cut(s)	20, 46, 547
Sau96I	GGNCC	2 cut(s)	297, 442
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	2 cut(s)	126, 293
SfaNI	GCATC	1 cut(s)	254
SfiI	GGCCNNNNNGGCC	1 cut(s)	146
Sfr274I	CTCGAG	2 cut(s)	341, 623
Sfr303I	CCGCGG	1 cut(s)	361
SfuI	TTCGAA	1 cut(s)	197
SgrBI	CCGCGG	1 cut(s)	361
SinI	GGWCC	2 cut(s)	297, 442
SlaI	CTCGAG	2 cut(s)	341, 623
SmlI	CTYRAG	3 cut(s)	341, 410, 623
SmoI	CTYRAG	3 cut(s)	341, 410, 623
Sse9I	AATT	1 cut(s)	74
SsiI	CCGC	8 cut(s)	141, 358, 360, 381, 421, 459, 541, 582
SspMI	CTAG	2 cut(s)	17, 26
StyD4I	CCNGG	1 cut(s)	293
StyI	CCWWGG	3 cut(s)	16, 25, 126
TaaI	ACNGT	2 cut(s)	589, 635
TaiI	ACGT	3 cut(s)	192, 239, 266
TaqI	TCGA	5 cut(s)	197, 342, 351, 546, 624
TasI	AATT	1 cut(s)	74
TauI	GCSGC	2 cut(s)	143, 363
TfiI	GAWTC	4 cut(s)	11, 199, 577, 601
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TseI	GCWGC	2 cut(s)	131, 179
TspGWI	ACGGA	3 cut(s)	268, 505, 521
VneI	GTGCAC	1 cut(s)	289
VpaK11BI	GGWCC	2 cut(s)	297, 442
XapI	RAATTY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XhoI	CTCGAG	2 cut(s)	341, 623
XmaJI	CCTAGG	2 cut(s)	16, 25
XmnI	GAANNNNTTC	1 cut(s)	635
XspI	CTAG	2 cut(s)	17, 26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.