Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007709

Physical Location & Seq

Genomic Coordinates Forward (+)

2189254 .. 2190418

Gene Structure 1165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCGGTGCTGGGGCGGCTCAGCCATTCCAACATTGTGAGCTTGAGGGCTTATTACTTCGCCAGGGAGGAGAAATTGTTGGTATACGATTACATGCCCAATGGCAGCCTGTTCTGGGTTCTCCACGGAAACCGTGGACCCGGTCGGACTCCGCTGGACTGGACAACGAGGCTGAAAATCGCAGCCGGAGCGGCTCGAGGCTTGGCCTGCATTCACGACTCGTGCAGGCCGCTTAAGCTCACCCACGGTAACATCAAGTCCACCAACATCCTCTTAGACAAGACTGGCAACGCCCGCGTCTCCGACTTCGGACTCTCCGTTTTCGTGCCTCCTCCGCCCTCCACGTCGTCCGCTCCGCGATCTTGCGGTTACCGCGCTCCCGAGACGTTGGACGGTCGGAAGTTGACGCAGAAATCAGACGTGTACGCTTTTGGTGTTCTGCTGCTGGAGCTGCTCACGGGGAAGTGTCCCTCCGTGGTGGATAATGGCGGGTCCGGGGGAGGATACGGTGGGCCTGTGGACCTGCCCAGGTGGGTCCAGTCTGTGGTCAGGGAAGAATGGACGGTGGAGGTGTTTGACTTGGAGCTAATGAGGTACAAGGATATTGAGGAGGAGATGGTGGGGCTTTTGCAGATTGCAATGGCTTGTACGGTCGCTTCGCCTGATCAACGTCCCAGGATGAGCCAGGTGGTGAAAATGATTGACGAGATTCGGGGCCTGTCTGGTTCGCCAAGTCACGAGGCCGGCTTTGAATCCATGTCCGAGTCATCGTCCTTGTCGGAGGACACTTGCGGAGCAAGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 Pkinase Pkinase_Tyr

Protein Analysis

269

Amino Acids

29.17

Weight (kDa)

6.23

Isoelectric Point (pI)

54.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 233	5.6e-28	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 162	1.3e-27	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68400
fragaria_vesca	FvH4_4g26930 FvH4_4g26970
malus_domestica	MD13G1036800.v1.1 MD13G1038100.v1.1 MD13G1038400.v1.1 MD13G1260200.v1.1
prunus_persica	Prupe.1G314900_v2.0.a1
pyrus_communis	pycom13g03310 pycom13g03320 pycom16g03410
rosa_chinensis	RchiOBHm_Chr4g0434721
rosa_laevigata	RLG00000006655
rosa_multiflora	Rmu_sc0004538.1_g000001 Rmu_sc0008439.1_g000001 Rmu_sc0017904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375930
rosa_rugosa	Rorug04G0277800
rosa_samantha	Rh4AG334200 Rh4BG342600 Rh4CG357000 Rh4DG336300
rosa_wichuraiana	Rw4G029010 Rw4G029150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	531
AccB7I	CCANNNNNTGG	1 cut(s)	544
AccBSI	CCGCTC	2 cut(s)	191, 353
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	3 cut(s)	297, 358, 375
AfaI	GTAC	3 cut(s)	425, 596, 649
AfiI	CCNNNNNNNGG	2 cut(s)	115, 544
AflII	CTTAAG	1 cut(s)	233
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	1 cut(s)	752
AjiI	CACGTC	2 cut(s)	345, 421
AjnI	CCWGG	4 cut(s)	62, 527, 674, 684
AluBI	AGCT	4 cut(s)	42, 238, 451, 586
AluI	AGCT	4 cut(s)	42, 238, 451, 586
Alw26I	GTCTC	2 cut(s)	304, 377
Ama87I	CYCGRG	2 cut(s)	195, 380
AoxI	GGCC	5 cut(s)	204, 227, 512, 715, 741
ApeKI	GCWGC	4 cut(s)	105, 182, 442, 451
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	6 cut(s)	137, 492, 512, 520, 535, 715
AsuC2I	CCSGG	2 cut(s)	141, 496
AsuHPI	GGTGA	2 cut(s)	232, 703
AvaI	CYCGRG	2 cut(s)	195, 380
AvaII	GGWCC	4 cut(s)	137, 492, 520, 535
BarI	GAAGNNNNNNTAC	2 cut(s)	640, 672
BauI	CACGAG	2 cut(s)	220, 737
BbvI	GCAGC	4 cut(s)	117, 194, 429, 438
BccI	CCATC	1 cut(s)	610
BciT130I	CCWGG	4 cut(s)	64, 529, 676, 686
BciVI	GTATCC	1 cut(s)	497
BclI	TGATCA	1 cut(s)	664
BcnI	CCSGG	2 cut(s)	141, 496
BcoDI	GTCTC	2 cut(s)	304, 377
BfrI	CTTAAG	1 cut(s)	233
BfuAI	ACCTGC	1 cut(s)	531
BfuI	GTATCC	1 cut(s)	497
BglI	GCCNNNNNGGC	1 cut(s)	191
BisI	GCNGC	7 cut(s)	17, 106, 183, 192, 230, 443, 452
BlpI	GCTNAGC	1 cut(s)	20
BlsI	GCNGC	7 cut(s)	18, 107, 184, 193, 231, 444, 453
Bme1390I	CCNGG	6 cut(s)	64, 141, 496, 529, 676, 686
Bme18I	GGWCC	4 cut(s)	137, 492, 520, 535
BmeT110I	CYCGRG	2 cut(s)	195, 380
BmgBI	CACGTC	2 cut(s)	345, 421
BmgT120I	GGNCC	6 cut(s)	137, 492, 512, 520, 535, 715
BmiI	GGNNCC	4 cut(s)	139, 493, 536, 716
BmrFI	CCNGG	6 cut(s)	64, 141, 496, 529, 676, 686
BpmI	CTGGAG	1 cut(s)	467
Bpu1102I	GCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	64
BpuMI	CCSGG	2 cut(s)	141, 496
BsaJI	CCNNGG	8 cut(s)	63, 124, 133, 244, 474, 495, 527, 674
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 544
Bse118I	RCCGGY	1 cut(s)	743
Bse1I	ACTGG	3 cut(s)	164, 289, 538
Bse3DI	GCAATG	1 cut(s)	645
BseBI	CCWGG	4 cut(s)	64, 529, 676, 686
BseDI	CCNNGG	8 cut(s)	63, 124, 133, 244, 474, 495, 527, 674
BseGI	GGATG	2 cut(s)	267, 684
BseLI	CCNNNNNNNGG	2 cut(s)	115, 544
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	1 cut(s)	34
BseNI	ACTGG	3 cut(s)	164, 289, 538
BseRI	GAGGAG	4 cut(s)	83, 321, 623, 626
BseXI	GCAGC	4 cut(s)	117, 194, 429, 438
BseYI	CCCAGC	1 cut(s)	10
BsgI	GTGCAG	1 cut(s)	244
Bsh1236I	CGCG	3 cut(s)	297, 358, 375
Bsh1285I	CGRYCG	3 cut(s)	145, 397, 654
BshFI	GGCC	5 cut(s)	206, 229, 514, 717, 743
BsiEI	CGRYCG	3 cut(s)	145, 397, 654
BsiHKCI	CYCGRG	2 cut(s)	195, 380
BsiSI	CCGG	4 cut(s)	141, 186, 495, 744
BslFI	GGGAC	2 cut(s)	453, 657
BslI	CCNNNNNNNGG	2 cut(s)	115, 544
BsmAI	GTCTC	2 cut(s)	304, 377
BsmBI	CGTCTC	2 cut(s)	304, 377
BsmFI	GGGAC	2 cut(s)	453, 657
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	5 cut(s)	206, 229, 514, 717, 743
BsoBI	CYCGRG	2 cut(s)	195, 380
Bsp143I	GATC	2 cut(s)	359, 664
Bsp1720I	GCTNAGC	1 cut(s)	20
BspANI	GGCC	5 cut(s)	206, 229, 514, 717, 743
BspCNI	CTCAG	1 cut(s)	33
BspFNI	CGCG	3 cut(s)	297, 358, 375
BspLI	GGNNCC	4 cut(s)	139, 493, 536, 716
BspMI	ACCTGC	1 cut(s)	531
BspTI	CTTAAG	1 cut(s)	233
BsrBI	CCGCTC	2 cut(s)	191, 353
BsrDI	GCAATG	1 cut(s)	645
BsrFI	RCCGGY	1 cut(s)	743
BsrI	ACTGG	3 cut(s)	164, 289, 538
BssAI	RCCGGY	1 cut(s)	743
BssECI	CCNNGG	8 cut(s)	63, 124, 133, 244, 474, 495, 527, 674
BssMI	GATC	2 cut(s)	359, 664
BssNAI	GTATAC	1 cut(s)	85
BssSI	CACGAG	2 cut(s)	220, 737
Bst1107I	GTATAC	1 cut(s)	85
Bst2BI	CACGAG	2 cut(s)	220, 737
Bst2UI	CCWGG	4 cut(s)	64, 529, 676, 686
Bst4CI	ACNGT	6 cut(s)	134, 248, 395, 509, 565, 652
BstAFI	CTTAAG	1 cut(s)	233
BstC8I	GCNNGC	4 cut(s)	208, 227, 295, 745
BstDEI	CTNAG	2 cut(s)	20, 274
BstDSI	CCRYGG	4 cut(s)	124, 133, 244, 474
BstEII	GGTNACC	1 cut(s)	368
BstF5I	GGATG	2 cut(s)	267, 684
BstFNI	CGCG	3 cut(s)	297, 358, 375
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	2 cut(s)	362, 667
BstMAI	GTCTC	2 cut(s)	304, 377
BstMBI	GATC	2 cut(s)	359, 664
BstMCI	CGRYCG	3 cut(s)	145, 397, 654
BstNI	CCWGG	4 cut(s)	64, 529, 676, 686
BstNSI	RCATGY	1 cut(s)	97
BstPI	GGTNACC	1 cut(s)	368
BstSCI	CCNGG	6 cut(s)	62, 139, 494, 527, 674, 684
BstUI	CGCG	3 cut(s)	297, 358, 375
BstV1I	GCAGC	4 cut(s)	117, 194, 429, 438
BstZ17I	GTATAC	1 cut(s)	85
BsuI	GTATCC	1 cut(s)	497
BsuRI	GGCC	5 cut(s)	206, 229, 514, 717, 743
BtgI	CCRYGG	4 cut(s)	124, 133, 244, 474
BtrI	CACGTC	2 cut(s)	345, 421
BtsCI	GGATG	2 cut(s)	267, 684
BveI	ACCTGC	1 cut(s)	531
Cac8I	GCNNGC	4 cut(s)	208, 227, 295, 745
CfoI	GCGC	1 cut(s)	377
Cfr10I	RCCGGY	1 cut(s)	743
Cfr13I	GGNCC	6 cut(s)	137, 492, 512, 520, 535, 715
CseI	GACGC	2 cut(s)	286, 415
Csp6I	GTAC	3 cut(s)	424, 595, 648
CviAII	CATG	2 cut(s)	94, 757
CviQI	GTAC	3 cut(s)	424, 595, 648
DdeI	CTNAG	2 cut(s)	20, 274
DpnI	GATC	2 cut(s)	361, 666
DpnII	GATC	2 cut(s)	359, 664
EciI	GGCGGA	1 cut(s)	324
Eco47I	GGWCC	4 cut(s)	137, 492, 520, 535
Eco88I	CYCGRG	2 cut(s)	195, 380
Eco91I	GGTNACC	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	715
EcoO65I	GGTNACC	1 cut(s)	368
EcoRII	CCWGG	4 cut(s)	62, 527, 674, 684
Esp3I	CGTCTC	2 cut(s)	304, 377
FaeI	CATG	2 cut(s)	97, 760
FaiI	YATR	3 cut(s)	85, 95, 758
FaqI	GGGAC	2 cut(s)	453, 657
FatI	CATG	2 cut(s)	93, 756
FauI	CCCGC	2 cut(s)	302, 482
FbaI	TGATCA	1 cut(s)	664
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	7 cut(s)	17, 106, 183, 192, 230, 443, 452
FokI	GGATG	2 cut(s)	254, 691
Fsp4HI	GCNGC	7 cut(s)	17, 106, 183, 192, 230, 443, 452
GlaI	GCGC	1 cut(s)	376
GluI	GCNGC	7 cut(s)	17, 106, 183, 192, 230, 443, 452
GsaI	CCCAGC	1 cut(s)	14
GsuI	CTGGAG	1 cut(s)	467
HaeIII	GGCC	5 cut(s)	206, 229, 514, 717, 743
HapII	CCGG	4 cut(s)	141, 186, 495, 744
HgaI	GACGC	2 cut(s)	286, 415
HhaI	GCGC	1 cut(s)	377
Hin1II	CATG	2 cut(s)	97, 760
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	6 cut(s)	148, 218, 312, 709, 752, 764
HpaII	CCGG	4 cut(s)	141, 186, 495, 744
HphI	GGTGA	2 cut(s)	232, 703
Hpy166II	GTNNAC	6 cut(s)	85, 137, 261, 405, 424, 520
Hpy188I	TCNGA	7 cut(s)	147, 304, 311, 399, 418, 763, 781
Hpy188III	TCNNGA	3 cut(s)	215, 380, 737
Hpy8I	GTNNAC	6 cut(s)	85, 137, 261, 405, 424, 520
Hpy99I	CGWCG	1 cut(s)	349
HpyCH4III	ACNGT	6 cut(s)	134, 248, 395, 509, 565, 652
HpyCH4IV	ACGT	4 cut(s)	344, 386, 420, 670
HpyCH4V	TGCA	4 cut(s)	210, 225, 631, 638
HpyF3I	CTNAG	2 cut(s)	20, 274
HpySE526I	ACGT	4 cut(s)	344, 386, 420, 670
Hsp92II	CATG	2 cut(s)	97, 760
HspAI	GCGC	1 cut(s)	375
KroI	GCCGGC	1 cut(s)	743
KroNI	GCCGGC	1 cut(s)	745
Ksp22I	TGATCA	1 cut(s)	664
Kzo9I	GATC	2 cut(s)	359, 664
LmnI	GCTCC	6 cut(s)	188, 358, 382, 448, 583, 794
Lsp1109I	GCAGC	4 cut(s)	117, 194, 429, 438
MaeII	ACGT	4 cut(s)	344, 386, 420, 670
MaeIII	GTNAC	3 cut(s)	248, 368, 734
MalI	GATC	2 cut(s)	361, 666
MbiI	CCGCTC	2 cut(s)	191, 353
MboI	GATC	2 cut(s)	359, 664
MboII	GAAGA	1 cut(s)	566
MluCI	AATT	1 cut(s)	74
MlyI	GAGTC	4 cut(s)	142, 212, 306, 773
MmeI	TCCRAC	6 cut(s)	54, 125, 327, 369, 377, 759
MroNI	GCCGGC	1 cut(s)	743
MseI	TTAA	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	154
MspCI	CTTAAG	1 cut(s)	233
MspI	CCGG	4 cut(s)	141, 186, 495, 744
MspR9I	CCNGG	6 cut(s)	64, 141, 496, 529, 676, 686
Mva1269I	GAATGC	1 cut(s)	210
MvaI	CCWGG	4 cut(s)	64, 529, 676, 686
MvnI	CGCG	3 cut(s)	297, 358, 375
NaeI	GCCGGC	1 cut(s)	745
NciI	CCSGG	2 cut(s)	141, 496
NdeII	GATC	2 cut(s)	359, 664
NgoMIV	GCCGGC	1 cut(s)	743
NlaIII	CATG	2 cut(s)	97, 760
NlaIV	GGNNCC	4 cut(s)	139, 493, 536, 716
NmuCI	GTSAC	1 cut(s)	734
NspI	RCATGY	1 cut(s)	97
PaeR7I	CTCGAG	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PctI	GAATGC	1 cut(s)	210
PdiI	GCCGGC	1 cut(s)	745
PfeI	GAWTC	2 cut(s)	709, 752
PflFI	GACNNNGTC	1 cut(s)	141
PflMI	CCANNNNNTGG	1 cut(s)	544
PkrI	GCNGC	7 cut(s)	18, 107, 184, 193, 231, 444, 453
PleI	GAGTC	4 cut(s)	142, 212, 306, 772
PpsI	GAGTC	4 cut(s)	142, 212, 306, 772
Psp6I	CCWGG	4 cut(s)	62, 527, 674, 684
PspEI	GGTNACC	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	4 cut(s)	62, 527, 674, 684
PspN4I	GGNNCC	4 cut(s)	139, 493, 536, 716
PspPI	GGNCC	6 cut(s)	137, 492, 512, 520, 535, 715
PspXI	VCTCGAGB	1 cut(s)	195
PsyI	GACNNNGTC	1 cut(s)	141
RsaI	GTAC	3 cut(s)	425, 596, 649
RsaNI	GTAC	3 cut(s)	424, 595, 648
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	7 cut(s)	17, 106, 183, 192, 230, 443, 452
Sau3AI	GATC	2 cut(s)	359, 664
Sau96I	GGNCC	6 cut(s)	137, 492, 512, 520, 535, 715
SchI	GAGTC	4 cut(s)	142, 212, 306, 773
ScrFI	CCNGG	6 cut(s)	64, 141, 496, 529, 676, 686
Sfr274I	CTCGAG	1 cut(s)	195
SinI	GGWCC	4 cut(s)	137, 492, 520, 535
SlaI	CTCGAG	1 cut(s)	195
SmlI	CTYRAG	3 cut(s)	43, 195, 233
SmoI	CTYRAG	3 cut(s)	43, 195, 233
Sse9I	AATT	1 cut(s)	74
StyD4I	CCNGG	6 cut(s)	62, 139, 494, 527, 674, 684
TaaI	ACNGT	6 cut(s)	134, 248, 395, 509, 565, 652
TaiI	ACGT	4 cut(s)	347, 389, 423, 673
TaqI	TCGA	1 cut(s)	196
TasI	AATT	1 cut(s)	74
TauI	GCSGC	3 cut(s)	19, 194, 232
TfiI	GAWTC	2 cut(s)	709, 752
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TseFI	GTSAC	1 cut(s)	734
TseI	GCWGC	4 cut(s)	105, 182, 442, 451
Tsp45I	GTSAC	1 cut(s)	734
TspGWI	ACGGA	3 cut(s)	141, 307, 463
Tth111I	GACNNNGTC	1 cut(s)	141
Van91I	CCANNNNNTGG	1 cut(s)	544
Vha464I	CTTAAG	1 cut(s)	233
VpaK11BI	GGWCC	4 cut(s)	137, 492, 520, 535
XceI	RCATGY	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XhoI	CTCGAG	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.