Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007709

Physical Location & Seq

Genomic Coordinates Forward (+)

2612857 .. 2618829

Gene Structure 5973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1038400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGTGGGGCTTTTGCAGATTGCAATGGCTTGTACGGCCGCTTCGCCTGATCAACGTCCCAGGATGAGCCAGGTGGTGAAAATGATTGACGAGATTCGGGGCCTGTCTGGTTCGCCGAGTCACGAGGCCGGCTTTGAATCCATGTCCGAGTCGTCGGCCTTGTCGGAGGACACTTGCGGAGCAAGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 Pkinase Pkinase_Tyr

Protein Analysis

64

Amino Acids

6.59

Weight (kDa)

4.55

Isoelectric Point (pI)

85.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68400
fragaria_vesca	FvH4_4g26930 FvH4_4g26970
malus_domestica	MD13G1036800.v1.1 MD13G1038100.v1.1 MD13G1038400.v1.1 MD13G1260200.v1.1
prunus_persica	Prupe.1G314900_v2.0.a1
pyrus_communis	pycom13g03310 pycom13g03320 pycom16g03410
rosa_chinensis	RchiOBHm_Chr4g0434721
rosa_laevigata	RLG00000006655
rosa_multiflora	Rmu_sc0004538.1_g000001 Rmu_sc0008439.1_g000001 Rmu_sc0017904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375930
rosa_rugosa	Rorug04G0277800
rosa_samantha	Rh4AG334200 Rh4BG342600 Rh4CG357000 Rh4DG336300
rosa_wichuraiana	Rw4G029010 Rw4G029150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	39, 177
AcoI	YGGCCR	1 cut(s)	36
AfaI	GTAC	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	137
AjnI	CCWGG	2 cut(s)	59, 69
AoxI	GGCC	4 cut(s)	36, 100, 126, 156
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	88
BarI	GAAGNNNNNNTAC	2 cut(s)	25, 57
BauI	CACGAG	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	2 cut(s)	61, 71
BclI	TGATCA	1 cut(s)	49
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	61, 71
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	2 cut(s)	61, 71
BsaJI	CCNNGG	1 cut(s)	59
Bse118I	RCCGGY	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	2 cut(s)	61, 71
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	30
BseX3I	CGGCCG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	4 cut(s)	38, 102, 128, 158
BsiEI	CGRYCG	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	4 cut(s)	38, 102, 128, 158
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	2 cut(s)	39, 177
BspANI	GGCC	4 cut(s)	38, 102, 128, 158
BspLI	GGNNCC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	30
BsrFI	RCCGGY	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	1 cut(s)	49
BssSI	CACGAG	1 cut(s)	122
Bst2BI	CACGAG	1 cut(s)	122
Bst2UI	CCWGG	2 cut(s)	61, 71
BstC8I	GCNNGC	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	69
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	2 cut(s)	61, 71
BstSCI	CCNGG	2 cut(s)	59, 69
BstZI	CGGCCG	1 cut(s)	36
BsuRI	GGCC	4 cut(s)	38, 102, 128, 158
BtsCI	GGATG	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	130
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	8 cut(s)	10, 29, 38, 69, 102, 128, 132, 158
CviKI_1	RGCY	8 cut(s)	10, 29, 38, 69, 102, 128, 132, 158
CviQI	GTAC	1 cut(s)	33
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	36
EagI	CGGCCG	1 cut(s)	36
EclXI	CGGCCG	1 cut(s)	36
Eco52I	CGGCCG	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	59, 69
FaeI	CATG	1 cut(s)	145
FaiI	YATR	1 cut(s)	143
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	1 cut(s)	141
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	1 cut(s)	76
Fsp4HI	GCNGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	39
HaeIII	GGCC	4 cut(s)	38, 102, 128, 158
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	1 cut(s)	145
HinfI	GANTC	4 cut(s)	94, 118, 137, 149
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	148, 166
Hpy188III	TCNNGA	1 cut(s)	122
Hpy99I	CGWCG	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	2 cut(s)	16, 23
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	1 cut(s)	145
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	8 cut(s)	46, 56, 60, 73, 83, 93, 116, 142
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MlyI	GAGTC	2 cut(s)	127, 158
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	2 cut(s)	118, 160
MroNI	GCCGGC	1 cut(s)	128
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	2 cut(s)	61, 71
MvaI	CCWGG	2 cut(s)	61, 71
MwoI	GCNNNNNNNGC	1 cut(s)	35
NaeI	GCCGGC	1 cut(s)	130
NdeII	GATC	1 cut(s)	49
NgoMIV	GCCGGC	1 cut(s)	128
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	1 cut(s)	101
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	119
PdiI	GCCGGC	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	94, 137
PkrI	GCNGC	1 cut(s)	40
PleI	GAGTC	2 cut(s)	126, 157
PpsI	GAGTC	2 cut(s)	126, 157
Psp6I	CCWGG	2 cut(s)	59, 69
PspGI	CCWGG	2 cut(s)	59, 69
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	1 cut(s)	100
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	2 cut(s)	127, 158
ScrFI	CCNGG	2 cut(s)	61, 71
SetI	ASST	2 cut(s)	58, 75
SsiI	CCGC	2 cut(s)	39, 177
StyD4I	CCNGG	2 cut(s)	59, 69
TaiI	ACGT	1 cut(s)	58
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	2 cut(s)	94, 137
TseFI	GTSAC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.