Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004538.1

Orthogroup ID

OG0007709

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 955

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004538.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atgttacctgcttttccagacctccaggctccagctcttttcaatataatctatgcccctcaacttcccattaattacgttcataccctatcccctctatttttcactacctcactccctctactctcatttgcagagacagcaatggcagccaaggccttcttcttctttctctctctactatttctcattatctctctaatccacgcaacttcaaacccagattccgagcctctcttagcgttcaaggccacgtcggacgcttccaatgctctcgccacgtggaactcatcctccgacccttgcaccacctgggtcggagtctcctgcacccggagccgggtctcgcggctcgttctcgagaacctcggccttagcggctcgttcgctgcgctgactgggttgactcagctccgagttctgagcctgaagcggaaccgcctctccggccccattcccgacctctctaacctcacttccctcaagctcctcttcctctcctacaacgacttctccggcgactttcccgcttccgtaacgtcccttttccggctttaccgcctcgatctcgcttacaacaacttgtccggtgaaattcccgagaccgtcaaccatttgactcatctcctcactctccgcctcgaagcgaaccggttctccggctcgatttccggcctcaacatccctaacctccaggagttcaacgtctcggcgaaccgtttgtccggcgaaattcccaagtcgttgtctattttctccgagtctgcatttgcgcaaaacccgggtctgtgcgggtctccggttcagaactgtaacacagaaaccgacccgactcgacccggaggagctattgcgtctcctgtaatacctgcaagaaacccaaccgtagtggcgtcctcgccgacttcattgccatcaagctctacgtccaccaaatcggaaaagtcgacgtcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 Pkinase Pkinase_Tyr

Protein Analysis

318

Amino Acids

34.11

Weight (kDa)

6.9

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68400
fragaria_vesca	FvH4_4g26930 FvH4_4g26970
malus_domestica	MD13G1036800.v1.1 MD13G1038100.v1.1 MD13G1038400.v1.1 MD13G1260200.v1.1
prunus_persica	Prupe.1G314900_v2.0.a1
pyrus_communis	pycom13g03310 pycom13g03320 pycom16g03410
rosa_chinensis	RchiOBHm_Chr4g0434721
rosa_laevigata	RLG00000006655
rosa_multiflora	Rmu_sc0004538.1_g000001 Rmu_sc0008439.1_g000001 Rmu_sc0017904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375930
rosa_rugosa	Rorug04G0277800
rosa_samantha	Rh4AG334200 Rh4BG342600 Rh4CG357000 Rh4DG336300
rosa_wichuraiana	Rw4G029010 Rw4G029150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	953
Acc16I	TGCGCA	1 cut(s)	774
Acc36I	ACCTGC	2 cut(s)	16, 877
AccI	GTMKAC	1 cut(s)	947
AccII	CGCG	1 cut(s)	349
AciI	CCGC	8 cut(s)	349, 378, 433, 439, 528, 559, 637, 792
AcsI	RAATTY	2 cut(s)	594, 732
AcuI	CTGAAG	1 cut(s)	449
AcvI	CACGTG	1 cut(s)	282
AcyI	GRCGYC	2 cut(s)	893, 950
AfiI	CCNNNNNNNGG	4 cut(s)	333, 339, 340, 549
AgeI	ACCGGT	1 cut(s)	651
AgsI	TTSAA	4 cut(s)	43, 216, 247, 703
AjiI	CACGTC	1 cut(s)	255
AjnI	CCWGG	3 cut(s)	24, 311, 693
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AloI	GAACNNNNNNTCC	8 cut(s)	278, 310, 428, 460, 641, 673, 707, 739
AluBI	AGCT	5 cut(s)	35, 412, 487, 848, 921
AluI	AGCT	5 cut(s)	35, 412, 487, 848, 921
Alw26I	GTCTC	7 cut(s)	131, 328, 349, 596, 712, 801, 861
Ama87I	CYCGRG	3 cut(s)	359, 599, 781
AoxI	GGCC	5 cut(s)	156, 249, 370, 448, 673
ApeKI	GCWGC	2 cut(s)	149, 389
ApoI	RAATTY	2 cut(s)	594, 732
ArsI	GACNNNNNNTTYG	4 cut(s)	707, 739, 769, 801
AseI	ATTAAT	1 cut(s)	72
AsiGI	ACCGGT	1 cut(s)	651
Asp700I	GAANNNNTTC	1 cut(s)	653
AspLEI	GCGC	2 cut(s)	394, 775
AspS9I	GGNCC	1 cut(s)	449
AsuC2I	CCSGG	5 cut(s)	334, 341, 782, 783, 840
AsuHPI	GGTGA	1 cut(s)	602
AvaI	CYCGRG	3 cut(s)	359, 599, 781
BbrPI	CACGTG	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	161, 376
BccI	CCATC	1 cut(s)	922
BcgI	CGANNNNNNTGC	2 cut(s)	892, 926
BciT130I	CCWGG	3 cut(s)	26, 313, 695
BcnI	CCSGG	5 cut(s)	334, 341, 782, 783, 840
BcoDI	GTCTC	7 cut(s)	131, 328, 349, 596, 712, 801, 861
BfuAI	ACCTGC	2 cut(s)	16, 877
BglI	GCCNNNNNGGC	2 cut(s)	378, 447
BisI	GCNGC	4 cut(s)	150, 350, 379, 390
BlsI	GCNGC	4 cut(s)	151, 351, 380, 391
Bme1390I	CCNGG	8 cut(s)	26, 313, 334, 341, 695, 782, 783, 840
BmeT110I	CYCGRG	3 cut(s)	359, 599, 781
BmgBI	CACGTC	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	4 cut(s)	30, 338, 437, 451
BmrFI	CCNGG	8 cut(s)	26, 313, 334, 341, 695, 782, 783, 840
BmrI	ACTGGG	1 cut(s)	408
BmuI	ACTGGG	1 cut(s)	408
BpmI	CTGGAG	3 cut(s)	8, 15, 677
Bpu10I	CCTNAGC	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	467
BpuMI	CCSGG	5 cut(s)	334, 341, 782, 783, 840
BsaAI	YACGTR	1 cut(s)	282
BsaHI	GRCGYC	2 cut(s)	893, 950
BsaI	GGTCTC	3 cut(s)	349, 596, 801
BsaJI	CCNNGG	4 cut(s)	153, 312, 367, 781
BsaWI	WCCGGW	3 cut(s)	587, 651, 799
BsaXI	ACNNNNNCTCC	8 cut(s)	278, 308, 428, 458, 497, 527, 641, 671
Bsc4I	CCNNNNNNNGG	4 cut(s)	333, 339, 340, 549
Bse118I	RCCGGY	1 cut(s)	651
Bse1I	ACTGG	1 cut(s)	403
Bse3DI	GCAATG	2 cut(s)	150, 908
BseBI	CCWGG	3 cut(s)	26, 313, 695
BseDI	CCNNGG	4 cut(s)	153, 312, 367, 781
BseGI	GGATG	2 cut(s)	290, 681
BseLI	CCNNNNNNNGG	4 cut(s)	333, 339, 340, 549
BseMI	GCAATG	2 cut(s)	150, 908
BseMII	CTCAG	2 cut(s)	413, 422
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	3 cut(s)	479, 617, 858
BseXI	GCAGC	2 cut(s)	161, 376
BsgI	GTGCAG	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	349
BshFI	GGCC	5 cut(s)	158, 251, 372, 450, 675
BshTI	ACCGGT	1 cut(s)	651
BsiHKCI	CYCGRG	3 cut(s)	359, 599, 781
BslFI	GGGAC	1 cut(s)	526
BslI	CCNNNNNNNGG	4 cut(s)	333, 339, 340, 549
BsmAI	GTCTC	7 cut(s)	131, 328, 349, 596, 712, 801, 861
BsmBI	CGTCTC	2 cut(s)	712, 861
BsmFI	GGGAC	1 cut(s)	526
BsnI	GGCC	5 cut(s)	158, 251, 372, 450, 675
Bso31I	GGTCTC	3 cut(s)	349, 596, 801
BsoBI	CYCGRG	3 cut(s)	359, 599, 781
Bsp143I	GATC	1 cut(s)	565
BspACI	CCGC	8 cut(s)	349, 378, 433, 439, 528, 559, 637, 792
BspANI	GGCC	5 cut(s)	158, 251, 372, 450, 675
BspCNI	CTCAG	2 cut(s)	414, 421
BspFNI	CGCG	1 cut(s)	349
BspLI	GGNNCC	4 cut(s)	30, 338, 437, 451
BspMI	ACCTGC	2 cut(s)	16, 877
BspTNI	GGTCTC	3 cut(s)	349, 596, 801
BsrDI	GCAATG	2 cut(s)	150, 908
BsrFI	RCCGGY	1 cut(s)	651
BsrI	ACTGG	1 cut(s)	403
BssAI	RCCGGY	1 cut(s)	651
BssECI	CCNNGG	4 cut(s)	153, 312, 367, 781
BssMI	GATC	1 cut(s)	565
BssNI	GRCGYC	2 cut(s)	893, 950
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	3 cut(s)	26, 313, 695
Bst4CI	ACNGT	4 cut(s)	607, 719, 812, 886
Bst6I	CTCTTC	1 cut(s)	497
BstACI	GRCGYC	2 cut(s)	893, 950
BstBAI	YACGTR	1 cut(s)	282
BstDEI	CTNAG	4 cut(s)	238, 374, 408, 422
BstF5I	GGATG	2 cut(s)	290, 681
BstFNI	CGCG	1 cut(s)	349
BstHHI	GCGC	2 cut(s)	394, 775
BstKTI	GATC	1 cut(s)	568
BstMAI	GTCTC	7 cut(s)	131, 328, 349, 596, 712, 801, 861
BstMBI	GATC	1 cut(s)	565
BstMWI	GCNNNNNNNGC	8 cut(s)	140, 149, 155, 248, 269, 336, 378, 447
BstNI	CCWGG	3 cut(s)	26, 313, 695
BstSCI	CCNGG	8 cut(s)	24, 311, 332, 339, 693, 780, 781, 838
BstUI	CGCG	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	161, 376
BsuRI	GGCC	5 cut(s)	158, 251, 372, 450, 675
BtrI	CACGTC	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	290, 681
BveI	ACCTGC	2 cut(s)	16, 877
CfoI	GCGC	2 cut(s)	394, 775
Cfr10I	RCCGGY	1 cut(s)	651
Cfr13I	GGNCC	1 cut(s)	449
Cfr9I	CCCGGG	1 cut(s)	781
CseI	GACGC	3 cut(s)	269, 843, 882
CspAI	ACCGGT	1 cut(s)	651
CspCI	CAANNNNNGTGG	2 cut(s)	870, 905
DdeI	CTNAG	4 cut(s)	238, 374, 408, 422
DpnI	GATC	1 cut(s)	567
DpnII	GATC	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
EciI	GGCGGA	1 cut(s)	626
Eco130I	CCWWGG	1 cut(s)	153
Eco147I	AGGCCT	1 cut(s)	158
Eco31I	GGTCTC	3 cut(s)	349, 596, 801
Eco57I	CTGAAG	1 cut(s)	449
Eco72I	CACGTG	1 cut(s)	282
Eco88I	CYCGRG	3 cut(s)	359, 599, 781
EcoRII	CCWGG	3 cut(s)	24, 311, 693
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
Esp3I	CGTCTC	2 cut(s)	712, 861
FaiI	YATR	3 cut(s)	47, 54, 84
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 476, 508
FaqI	GGGAC	1 cut(s)	526
FauI	CCCGC	2 cut(s)	535, 785
FblI	GTMKAC	1 cut(s)	947
Fnu4HI	GCNGC	4 cut(s)	150, 350, 379, 390
FokI	GGATG	2 cut(s)	277, 668
Fsp4HI	GCNGC	4 cut(s)	150, 350, 379, 390
FspI	TGCGCA	1 cut(s)	774
GlaI	GCGC	2 cut(s)	393, 774
GluI	GCNGC	4 cut(s)	150, 350, 379, 390
GsuI	CTGGAG	3 cut(s)	8, 15, 677
HaeIII	GGCC	5 cut(s)	158, 251, 372, 450, 675
HgaI	GACGC	3 cut(s)	269, 843, 882
HhaI	GCGC	2 cut(s)	394, 775
Hin1I	GRCGYC	2 cut(s)	893, 950
Hin6I	GCGC	2 cut(s)	392, 773
HinP1I	GCGC	2 cut(s)	392, 773
HincII	GTYRAC	3 cut(s)	405, 610, 948
HindII	GTYRAC	3 cut(s)	405, 610, 948
HinfI	GANTC	6 cut(s)	224, 321, 406, 619, 761, 832
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	4 cut(s)	405, 610, 930, 948
Hpy188I	TCNGA	9 cut(s)	229, 259, 298, 320, 416, 423, 760, 807, 940
Hpy188III	TCNNGA	5 cut(s)	17, 359, 361, 458, 599
Hpy8I	GTNNAC	4 cut(s)	405, 610, 930, 948
Hpy99I	CGWCG	2 cut(s)	259, 952
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	4 cut(s)	607, 719, 812, 886
HpyCH4IV	ACGT	7 cut(s)	78, 254, 281, 539, 705, 926, 950
HpyCH4V	TGCA	5 cut(s)	134, 306, 330, 767, 872
HpyF10VI	GCNNNNNNNGC	8 cut(s)	140, 149, 155, 248, 269, 336, 378, 447
HpyF3I	CTNAG	4 cut(s)	238, 374, 408, 422
HpySE526I	ACGT	7 cut(s)	78, 254, 281, 539, 705, 926, 950
Hsp92I	GRCGYC	2 cut(s)	893, 950
HspAI	GCGC	2 cut(s)	392, 773
Kzo9I	GATC	1 cut(s)	565
LmnI	GCTCC	5 cut(s)	34, 336, 417, 492, 845
Lsp1109I	GCAGC	2 cut(s)	161, 376
MaeII	ACGT	7 cut(s)	78, 254, 281, 539, 705, 926, 950
MaeIII	GTNAC	3 cut(s)	3, 535, 812
MalI	GATC	1 cut(s)	567
MboI	GATC	1 cut(s)	565
MboII	GAAGA	3 cut(s)	154, 157, 484
MluCI	AATT	3 cut(s)	73, 594, 732
MlyI	GAGTC	5 cut(s)	330, 400, 613, 770, 826
MmeI	TCCRAC	3 cut(s)	237, 298, 321
MroXI	GAANNNNTTC	1 cut(s)	653
MseI	TTAA	1 cut(s)	72
MspR9I	CCNGG	8 cut(s)	26, 313, 334, 341, 695, 782, 783, 840
MvaI	CCWGG	3 cut(s)	26, 313, 695
MvnI	CGCG	1 cut(s)	349
MwoI	GCNNNNNNNGC	8 cut(s)	140, 149, 155, 248, 269, 336, 378, 447
NciI	CCSGG	5 cut(s)	334, 341, 782, 783, 840
NdeII	GATC	1 cut(s)	565
NlaIV	GGNNCC	4 cut(s)	30, 338, 437, 451
NmeAIII	GCCGAG	2 cut(s)	348, 689
NsbI	TGCGCA	1 cut(s)	774
PaeR7I	CTCGAG	1 cut(s)	359
PceI	AGGCCT	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	944
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	1 cut(s)	224
PfoI	TCCNGGA	1 cut(s)	693
PinAI	ACCGGT	1 cut(s)	651
PkrI	GCNGC	4 cut(s)	151, 351, 380, 391
PleI	GAGTC	5 cut(s)	329, 400, 613, 769, 826
PmaCI	CACGTG	1 cut(s)	282
PmlI	CACGTG	1 cut(s)	282
PpsI	GAGTC	5 cut(s)	329, 400, 613, 769, 826
Ppu21I	YACGTR	1 cut(s)	282
PshBI	ATTAAT	1 cut(s)	72
Psp6I	CCWGG	3 cut(s)	24, 311, 693
PspCI	CACGTG	1 cut(s)	282
PspGI	CCWGG	3 cut(s)	24, 311, 693
PspN4I	GGNNCC	4 cut(s)	30, 338, 437, 451
PspPI	GGNCC	1 cut(s)	449
SalI	GTCGAC	1 cut(s)	946
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	4 cut(s)	150, 350, 379, 390
Sau3AI	GATC	1 cut(s)	565
Sau96I	GGNCC	1 cut(s)	449
SchI	GAGTC	5 cut(s)	330, 400, 613, 770, 826
ScrFI	CCNGG	8 cut(s)	26, 313, 334, 341, 695, 782, 783, 840
Sfr274I	CTCGAG	1 cut(s)	359
SlaI	CTCGAG	1 cut(s)	359
SmaI	CCCGGG	1 cut(s)	783
SmlI	CTYRAG	2 cut(s)	359, 482
SmoI	CTYRAG	2 cut(s)	359, 482
Sse9I	AATT	3 cut(s)	73, 594, 732
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	8 cut(s)	349, 378, 433, 439, 528, 559, 637, 792
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	8 cut(s)	24, 311, 332, 339, 693, 780, 781, 838
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	4 cut(s)	607, 719, 812, 886
TaiI	ACGT	7 cut(s)	81, 257, 284, 542, 708, 929, 953
TaqI	TCGA	6 cut(s)	360, 564, 642, 665, 835, 947
TasI	AATT	3 cut(s)	73, 594, 732
TauI	GCSGC	2 cut(s)	352, 381
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TseI	GCWGC	2 cut(s)	149, 389
TspDTI	ATGAA	2 cut(s)	71, 897
TspGWI	ACGGA	1 cut(s)	523
TspMI	CCCGGG	1 cut(s)	781
VspI	ATTAAT	1 cut(s)	72
XapI	RAATTY	2 cut(s)	594, 732
XhoI	CTCGAG	1 cut(s)	359
XmaI	CCCGGG	1 cut(s)	781
XmiI	GTMKAC	1 cut(s)	947
XmnI	GAANNNNTTC	1 cut(s)	653
ZraI	GACGTC	1 cut(s)	951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.