Rroxscaffold_5G00375930

Leucine-rich repeat receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
56702641 .. 56705812
3172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00375930.1

Sequence Viewer

Length: 1083 bp
ATGCGGCAGGGCAAGAGCAGCTCCAAGCTTCTGGAGACCGAGAAGATAGTCTACTCGTCAAGCCCATACTCGGCCCAGCCCTCTTTCGAGAGGGGACAGATGGTGTTTTTCGAAGGAGTGAAGCGTTTCGAGCTGGAGGACTTGCTGAGAGCCTCGGCGGAGATGTTGGGGAAAGGTGGGTTCGGGACGGCGTACAAGGCGGTTTTGGACGACGGCAATGTTGTGGCGGTGAAGAGGCTCAAGGATGCTCAAATTGGTGGGAAGAATCAGTTTGAGCAGCACATGACGGTGCTGGGCAAGCTTAACCATCTCAACATTGTGAGCTTGCGGGCTTATTATTTCGCTAGGGAGGAGAAGTTGCTGGTCTACGATTACATGCCAAATGGAAGCTTGTTTTGGCTTCTTCATGGTAACAGAGGACCTGGAAGAACCCCACTGGACTGGACCACCAGACTGAAAATTGCAGCCGGGGCTGCACGAGGGCTTGCTTTCATTCACAGCTCCTGCGCTCCCCTTAAGCTCACCCACGGCAACATCAAATCCACCAACATTCTCTTGGACAAGACCGGCAATGCTCGTGTCTCCGACTTCGGACTTTCGGCTTTTTCGCCTTCCTCTTCCTCCTCGTCGGCTCCGCGGTCGTGCGGGTACCGCGCTCCCGAGTTGCTGGAGGGTCGGAAAGTAACGCAGAAGTCGGACGTGTATGCTTTCGGTGTTCTTTTGCTGGAGATATTGACCGGGAAATGCCCGTCCGCGGTGGTGGATGGCGGGTCTGGCGGTGGCTACGGCGGACTGGTGGACCTGCCGAGGTGGGTCCAATCTGTGGTGAGAGAGGAGTGGACTGCCGAGGTGTTTGACTTGGAGTTGATGAGGTACAAGGACATTGAGGAGGAGATGGTGGGGCTTTTGCAGGTTGCGATGGCTTGCACGACGGCAGTACCTGATCAACGGCCGAGGATGAGCCAGGTGGTGAAGATGATCGACGAGATTCGAGGCGTGGCAGGGTCACCGCCTCATGAGGCGTTTGATTCCATGACGGAGTCGCCGGCTTTGTCCGAGGACACTTGCGGAGCAAGTCAGTGA

Protein Analysis

360

Amino Acids

39.27

Weight (kDa)

7.01

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 54 - 326 8.9e-38 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 54 - 255 2.7e-37 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 810, 901
Acc65I GGTACC 1 cut(s) 648
AccB1I GGYRCC 1 cut(s) 648
AccB7I CCANNNNNTGG 1 cut(s) 823
AccI GTMKAC 2 cut(s) 51, 366
AccII CGCG 3 cut(s) 637, 654, 755
AcoI YGGCCR 1 cut(s) 950
AfaI GTAC 4 cut(s) 194, 650, 875, 939
AfiI CCNNNNNNNGG 3 cut(s) 70, 754, 823
AflII CTTAAG 1 cut(s) 515
AflIII ACRYGT 1 cut(s) 699
AjiI CACGTC 1 cut(s) 700
AjnI CCWGG 2 cut(s) 421, 963
AjuI GAANNNNNNNTTGG 2 cut(s) 379, 411
AluBI AGCT 8 cut(s) 21, 28, 133, 301, 324, 390, 501, 520
AluI AGCT 8 cut(s) 21, 28, 133, 301, 324, 390, 501, 520
Alw26I GTCTC 2 cut(s) 29, 586
AlwNI CAGNNNCTG 2 cut(s) 504, 941
Ama87I CYCGRG 1 cut(s) 659
AoxI GGCC 2 cut(s) 72, 950
ApeKI GCWGC 4 cut(s) 18, 277, 464, 473
Asp700I GAANNNNTTC 1 cut(s) 125
Asp718I GGTACC 1 cut(s) 648
AspLEI GCGC 2 cut(s) 509, 656
AspS9I GGNCC 5 cut(s) 73, 419, 444, 799, 814
AsuC2I CCSGG 2 cut(s) 469, 739
AsuHPI GGTGA 5 cut(s) 241, 514, 838, 982, 999
AsuII TTCGAA 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 659
AvaII GGWCC 4 cut(s) 419, 444, 799, 814
BaeI ACNNNNGTAYC 2 cut(s) 921, 954
BanI GGYRCC 1 cut(s) 648
BarI GAAGNNNNNNTAC 2 cut(s) 35, 67
BauI CACGAG 2 cut(s) 477, 576
BbvI GCAGC 4 cut(s) 30, 289, 460, 476
BccI CCATC 5 cut(s) 94, 315, 758, 889, 913
BceAI ACGGC 6 cut(s) 204, 229, 544, 802, 948, 965
BciT130I CCWGG 2 cut(s) 423, 965
BclI TGATCA 1 cut(s) 943
BcnI CCSGG 2 cut(s) 469, 739
BcoDI GTCTC 2 cut(s) 29, 586
BfaI CTAG 1 cut(s) 345
BfrI CTTAAG 1 cut(s) 515
BfuAI ACCTGC 2 cut(s) 810, 901
BisI GCNGC 5 cut(s) 5, 19, 278, 465, 474
BlsI GCNGC 5 cut(s) 6, 20, 279, 466, 475
Bme1390I CCNGG 4 cut(s) 423, 469, 739, 965
Bme18I GGWCC 4 cut(s) 419, 444, 799, 814
BmeT110I CYCGRG 1 cut(s) 659
BmgBI CACGTC 1 cut(s) 700
BmgT120I GGNCC 5 cut(s) 73, 419, 444, 799, 814
BmiI GGNNCC 3 cut(s) 633, 650, 815
BmrFI CCNGG 4 cut(s) 423, 469, 739, 965
BmsI GCATC 1 cut(s) 235
BpmI CTGGAG 4 cut(s) 53, 155, 689, 746
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 224
BpuMI CCSGG 2 cut(s) 469, 739
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 9 cut(s) 153, 468, 526, 635, 753, 806, 846, 953, 1056
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 754, 823
Bse118I RCCGGY 2 cut(s) 566, 1045
Bse1I ACTGG 3 cut(s) 441, 446, 798
Bse3DI GCAATG 2 cut(s) 223, 577
BseBI CCWGG 2 cut(s) 423, 965
BseDI CCNNGG 9 cut(s) 153, 468, 526, 635, 753, 806, 846, 953, 1056
BseGI GGATG 3 cut(s) 250, 769, 963
BseLI CCNNNNNNNGG 3 cut(s) 70, 754, 823
BseMI GCAATG 2 cut(s) 223, 577
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 3 cut(s) 441, 446, 798
BseRI GAGGAG 5 cut(s) 365, 613, 848, 902, 905
BseX3I CGGCCG 1 cut(s) 950
BseXI GCAGC 4 cut(s) 30, 289, 460, 476
BseYI CCCAGC 2 cut(s) 75, 292
BsgI GTGCAG 1 cut(s) 459
Bsh1236I CGCG 3 cut(s) 637, 654, 755
Bsh1285I CGRYCG 2 cut(s) 641, 953
BshFI GGCC 2 cut(s) 74, 952
BshNI GGYRCC 1 cut(s) 648
BsiEI CGRYCG 2 cut(s) 641, 953
BsiHKCI CYCGRG 1 cut(s) 659
BsiSI CCGG 4 cut(s) 468, 567, 738, 1046
BslFI GGGAC 2 cut(s) 108, 199
BslI CCNNNNNNNGG 3 cut(s) 70, 754, 823
BsmAI GTCTC 2 cut(s) 29, 586
BsmFI GGGAC 2 cut(s) 108, 199
BsnI GGCC 2 cut(s) 74, 952
Bso31I GGTCTC 1 cut(s) 29
BsoBI CYCGRG 1 cut(s) 659
Bsp119I TTCGAA 1 cut(s) 111
Bsp143I GATC 2 cut(s) 943, 978
BspANI GGCC 2 cut(s) 74, 952
BspCNI CTCAG 1 cut(s) 138
BspFNI CGCG 3 cut(s) 637, 654, 755
BspHI TCATGA 1 cut(s) 1015
BspLI GGNNCC 3 cut(s) 633, 650, 815
BspMI ACCTGC 2 cut(s) 810, 901
BspT104I TTCGAA 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 648
BspTI CTTAAG 1 cut(s) 515
BspTNI GGTCTC 1 cut(s) 29
BsrDI GCAATG 2 cut(s) 223, 577
BsrFI RCCGGY 2 cut(s) 566, 1045
BsrI ACTGG 3 cut(s) 441, 446, 798
BssAI RCCGGY 2 cut(s) 566, 1045
BssECI CCNNGG 9 cut(s) 153, 468, 526, 635, 753, 806, 846, 953, 1056
BssMI GATC 2 cut(s) 943, 978
BssSI CACGAG 2 cut(s) 477, 576
Bst2BI CACGAG 2 cut(s) 477, 576
Bst2UI CCWGG 2 cut(s) 423, 965
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 2 cut(s) 227, 622
BstAFI CTTAAG 1 cut(s) 515
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 6 cut(s) 299, 326, 330, 486, 925, 1047
BstDEI CTNAG 1 cut(s) 146
BstDSI CCRYGG 3 cut(s) 526, 635, 753
BstEII GGTNACC 1 cut(s) 1005
BstF5I GGATG 3 cut(s) 250, 769, 963
BstFNI CGCG 3 cut(s) 637, 654, 755
BstHHI GCGC 2 cut(s) 509, 656
BstKTI GATC 2 cut(s) 946, 981
BstMAI GTCTC 2 cut(s) 29, 586
BstMBI GATC 2 cut(s) 943, 978
BstMCI CGRYCG 2 cut(s) 641, 953
BstMWI GCNNNNNNNGC 8 cut(s) 18, 130, 197, 298, 470, 473, 651, 774
BstNI CCWGG 2 cut(s) 423, 965
BstNSI RCATGY 1 cut(s) 379
BstPI GGTNACC 1 cut(s) 1005
BstSCI CCNGG 4 cut(s) 421, 467, 737, 963
BstUI CGCG 3 cut(s) 637, 654, 755
BstV1I GCAGC 4 cut(s) 30, 289, 460, 476
BstXI CCANNNNNNTGG 2 cut(s) 31, 441
BstZI CGGCCG 1 cut(s) 950
BsuRI GGCC 2 cut(s) 74, 952
BtgI CCRYGG 3 cut(s) 526, 635, 753
BtgZI GCGATG 1 cut(s) 932
BtrI CACGTC 1 cut(s) 700
BtsCI GGATG 3 cut(s) 250, 769, 963
BtsIMutI CAGTG 1 cut(s) 434
BveI ACCTGC 2 cut(s) 810, 901
Cac8I GCNNGC 6 cut(s) 299, 326, 330, 486, 925, 1047
CaiI CAGNNNCTG 2 cut(s) 504, 941
CciI TCATGA 1 cut(s) 1015
CfoI GCGC 2 cut(s) 509, 656
Cfr10I RCCGGY 2 cut(s) 566, 1045
Cfr13I GGNCC 5 cut(s) 73, 419, 444, 799, 814
Cfr42I CCGCGG 2 cut(s) 638, 756
Csp6I GTAC 4 cut(s) 193, 649, 874, 938
CviAII CATG 5 cut(s) 283, 376, 407, 1016, 1033
CviQI GTAC 4 cut(s) 193, 649, 874, 938
DdeI CTNAG 1 cut(s) 146
DpnI GATC 2 cut(s) 945, 980
DpnII GATC 2 cut(s) 943, 978
EaeI YGGCCR 1 cut(s) 950
EagI CGGCCG 1 cut(s) 950
Eam1104I CTCTTC 2 cut(s) 227, 622
EarI CTCTTC 2 cut(s) 227, 622
EciI GGCGGA 2 cut(s) 173, 804
EclXI CGGCCG 1 cut(s) 950
Eco31I GGTCTC 1 cut(s) 29
Eco47I GGWCC 4 cut(s) 419, 444, 799, 814
Eco52I CGGCCG 1 cut(s) 950
Eco88I CYCGRG 1 cut(s) 659
Eco91I GGTNACC 1 cut(s) 1005
EcoO109I RGGNCCY 1 cut(s) 419
EcoO65I GGTNACC 1 cut(s) 1005
EcoRII CCWGG 2 cut(s) 421, 963
FaeI CATG 5 cut(s) 286, 379, 410, 1019, 1036
FaiI YATR 7 cut(s) 67, 284, 377, 408, 705, 1017, 1034
FaqI GGGAC 2 cut(s) 108, 199
FatI CATG 5 cut(s) 282, 375, 406, 1015, 1032
FauI CCCGC 3 cut(s) 321, 638, 761
FbaI TGATCA 1 cut(s) 943
FblI GTMKAC 2 cut(s) 51, 366
Fnu4HI GCNGC 5 cut(s) 5, 19, 278, 465, 474
FokI GGATG 3 cut(s) 257, 776, 970
Fsp4HI GCNGC 5 cut(s) 5, 19, 278, 465, 474
FspBI CTAG 1 cut(s) 345
GlaI GCGC 2 cut(s) 508, 655
GluI GCNGC 5 cut(s) 5, 19, 278, 465, 474
GsaI CCCAGC 2 cut(s) 79, 296
GsuI CTGGAG 4 cut(s) 53, 155, 689, 746
HaeIII GGCC 2 cut(s) 74, 952
HapII CCGG 4 cut(s) 468, 567, 738, 1046
HhaI GCGC 2 cut(s) 509, 656
Hin1II CATG 5 cut(s) 286, 379, 410, 1019, 1036
Hin6I GCGC 2 cut(s) 507, 654
HinP1I GCGC 2 cut(s) 507, 654
HindIII AAGCTT 3 cut(s) 26, 299, 388
HinfI GANTC 4 cut(s) 265, 988, 1028, 1040
HpaII CCGG 4 cut(s) 468, 567, 738, 1046
HphI GGTGA 5 cut(s) 241, 514, 838, 982, 999
Hpy166II GTNNAC 4 cut(s) 52, 367, 799, 840
Hpy188I TCNGA 5 cut(s) 586, 593, 678, 697, 1057
Hpy188III TCNNGA 5 cut(s) 32, 88, 184, 659, 1016
Hpy8I GTNNAC 4 cut(s) 52, 367, 799, 840
Hpy99I CGWCG 4 cut(s) 215, 631, 934, 986
HpyAV CCTTC 2 cut(s) 107, 621
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 699
HpyCH4V TGCA 4 cut(s) 464, 476, 910, 927
HpyF10VI GCNNNNNNNGC 8 cut(s) 18, 130, 197, 298, 470, 473, 651, 774
HpyF3I CTNAG 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 699
Hsp92II CATG 5 cut(s) 286, 379, 410, 1019, 1036
HspAI GCGC 2 cut(s) 507, 654
KpnI GGTACC 1 cut(s) 652
KroI GCCGGC 1 cut(s) 1045
KroNI GCCGGC 1 cut(s) 1047
Ksp22I TGATCA 1 cut(s) 943
KspI CCGCGG 2 cut(s) 638, 756
Kzo9I GATC 2 cut(s) 943, 978
LmnI GCTCC 6 cut(s) 26, 506, 514, 637, 661, 1070
Lsp1109I GCAGC 4 cut(s) 30, 289, 460, 476
LweI GCATC 1 cut(s) 235
MaeI CTAG 1 cut(s) 345
MaeII ACGT 1 cut(s) 699
MaeIII GTNAC 3 cut(s) 410, 682, 1005
MalI GATC 2 cut(s) 945, 980
MboI GATC 2 cut(s) 943, 978
MboII GAAGA 7 cut(s) 55, 244, 274, 395, 438, 609, 985
MluCI AATT 2 cut(s) 252, 459
MlyI GAGTC 1 cut(s) 1049
MmeI TCCRAC 3 cut(s) 609, 656, 675
MroNI GCCGGC 1 cut(s) 1045
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 2 cut(s) 303, 516
MslI CAYNNNNRTG 1 cut(s) 287
MspA1I CMGCKG 2 cut(s) 637, 755
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 4 cut(s) 468, 567, 738, 1046
MspR9I CCNGG 4 cut(s) 423, 469, 739, 965
MvaI CCWGG 2 cut(s) 423, 965
MvnI CGCG 3 cut(s) 637, 654, 755
MwoI GCNNNNNNNGC 8 cut(s) 18, 130, 197, 298, 470, 473, 651, 774
NaeI GCCGGC 1 cut(s) 1047
NciI CCSGG 2 cut(s) 469, 739
NdeII GATC 2 cut(s) 943, 978
NgoMIV GCCGGC 1 cut(s) 1045
NlaIII CATG 5 cut(s) 286, 379, 410, 1019, 1036
NlaIV GGNNCC 3 cut(s) 633, 650, 815
NmeAIII GCCGAG 5 cut(s) 50, 134, 831, 871, 978
NmuCI GTSAC 1 cut(s) 1005
NspI RCATGY 1 cut(s) 379
NspV TTCGAA 1 cut(s) 111
PagI TCATGA 1 cut(s) 1015
PdiI GCCGGC 1 cut(s) 1047
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 3 cut(s) 265, 988, 1028
PflFI GACNNNGTC 1 cut(s) 1039
PflMI CCANNNNNTGG 1 cut(s) 823
PkrI GCNGC 5 cut(s) 6, 20, 279, 466, 475
PleI GAGTC 1 cut(s) 1048
PpsI GAGTC 1 cut(s) 1048
PpuMI RGGWCCY 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 419
Psp6I CCWGG 2 cut(s) 421, 963
PspEI GGTNACC 1 cut(s) 1005
PspFI CCCAGC 2 cut(s) 75, 292
PspGI CCWGG 2 cut(s) 421, 963
PspN4I GGNNCC 3 cut(s) 633, 650, 815
PspPI GGNCC 5 cut(s) 73, 419, 444, 799, 814
PspPPI RGGWCCY 1 cut(s) 419
PstNI CAGNNNCTG 2 cut(s) 504, 941
PsyI GACNNNGTC 1 cut(s) 1039
RsaI GTAC 4 cut(s) 194, 650, 875, 939
RsaNI GTAC 4 cut(s) 193, 649, 874, 938
RseI CAYNNNNRTG 1 cut(s) 287
SacII CCGCGG 2 cut(s) 638, 756
SaqAI TTAA 2 cut(s) 303, 516
SatI GCNGC 5 cut(s) 5, 19, 278, 465, 474
Sau3AI GATC 2 cut(s) 943, 978
Sau96I GGNCC 5 cut(s) 73, 419, 444, 799, 814
SchI GAGTC 1 cut(s) 1049
ScrFI CCNGG 4 cut(s) 423, 469, 739, 965
SfaNI GCATC 1 cut(s) 235
Sfr303I CCGCGG 2 cut(s) 638, 756
SfuI TTCGAA 1 cut(s) 111
SgrBI CCGCGG 2 cut(s) 638, 756
SinI GGWCC 4 cut(s) 419, 444, 799, 814
SmiMI CAYNNNNRTG 1 cut(s) 287
SmlI CTYRAG 2 cut(s) 239, 515
SmoI CTYRAG 2 cut(s) 239, 515
Sse9I AATT 2 cut(s) 252, 459
SspMI CTAG 1 cut(s) 345
StyD4I CCNGG 4 cut(s) 421, 467, 737, 963
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 702
TaqI TCGA 5 cut(s) 87, 111, 129, 981, 991
TaqII GACCGA 1 cut(s) 53
TasI AATT 2 cut(s) 252, 459
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 3 cut(s) 265, 988, 1028
Tru1I TTAA 2 cut(s) 303, 516
Tru9I TTAA 2 cut(s) 303, 516
TscAI CASTG 1 cut(s) 441
TseFI GTSAC 1 cut(s) 1005
TseI GCWGC 4 cut(s) 18, 277, 464, 473
Tsp45I GTSAC 1 cut(s) 1005
TspDTI ATGAA 2 cut(s) 395, 481
TspGWI ACGGA 1 cut(s) 1052
TspRI CASTG 1 cut(s) 441
Tth111I GACNNNGTC 1 cut(s) 1039
Van91I CCANNNNNTGG 1 cut(s) 823
Vha464I CTTAAG 1 cut(s) 515
VpaK11BI GGWCC 4 cut(s) 419, 444, 799, 814
XceI RCATGY 1 cut(s) 379
XcmI CCANNNNNNNNNTGG 1 cut(s) 553
XmiI GTMKAC 2 cut(s) 51, 366
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.