Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008637

Physical Location & Seq

Genomic Coordinates Reverse (-)

30359275 .. 30361087

Gene Structure 1813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAAACCAACCCAAGAACACTGGCGTGAGTGGCGTCTTCACGCTCCCACAAAGATCCTAGTCACCTCGATCACAGCAATGGCGGCGGAAACGACTACGTTTCCGATCGACCTAACGAAAACGAGGCTCCAGCTCCACGGCGAGTCTCGGTCTCATGGCTCGAGTCAACCCACCAACGCGTTCCGAGTGGCCTCGGAGATCGTGCGCCGGCAAGGCCCTTTGGGACTGTACAAGGGTCTGTCTCCGGCGATACTCAGGCACATGTTTTACACGCCCATTCGCATCGTCGGCTACGAGCACCTCAGAAACTCTTTGAAGACCGATGGTGGGTCCCTCTCTCTCCAGGCCAGAGCCATTTCCGGCGGACTCTCCGGCGTCATTGCTCAGTTGGTGGCAAGCCCTGCAGATCTTGTAAAGGTGAGGATGCAAGCAGATGGTCGTTTTGTCAGCCAAGGCTTTCAACCTAGGTACTCCGGGTGTTTTGATGCTTTAAGCAAGATCGCCCGAGAAGAAGGTGTTGGAGGACTTTGGAAAGGGGTTTTCCCTAGTGTTCAAAGAGCTTTCTTAGTGAACATGGGAGAATTAGCTTGCTATGATCAAGCAAAACGTTTTGTAATCAGTAATCAGATTTCTGAGGATAATATATATGCCCACACATTAGCATCAATCATGTCGGGCCTTTCGGCAACTGCTTTGAGCTGTCCAGCAGACGTTGTAAAGACGAGAATGATGAATCAGTCGGAAATCAAGGAAGGGAAGATTATGTACAACAGTTCTTATGACTGTCTTGTGAAGACTGTCAAAGTTGAAGGTCTGAGAGCATTATGGAAAGGGTTCTTTCCTACATGGGCACGGCTTGGACCTTGGCAATTTGTGTTCTGGGTCTCGTATGAGAAGTTTCGAAAAATTGCAGGGTTTCCTTCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051881 GO:0055085 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

310

Amino Acids

34.44

Weight (kDa)

9.82

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	15 - 107	9e-19	Mitochondrial carrier protein
Mito_carr	PF00153	112 - 207	1.9e-23	Mitochondrial carrier protein
Mito_carr	PF00153	212 - 303	1.5e-22	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14140
fragaria_vesca	FvH4_4g31010 FvH4_4g31020
malus_domestica	MD13G1068800.v1.1 MD13G1255700.v1.1 MD16G1069100.v1.1
prunus_persica	Prupe.1G278100_v2.0.a1
pyrus_communis	pycom13g06160
rosa_chinensis	RchiOBHm_Chr4g0439381 RchiOBHm_Chr7g0223901
rosa_laevigata	RLG00000001923 RLG00000006275
rosa_multiflora	Rmu_co8146616.1_g000001 Rmu_sc0002469.1_g000001 Rmu_sc0004540.1_g000015
rosa_roxburghii	Rroxscaffold_3G00235200 Rroxscaffold_5G00380320
rosa_rugosa	Rorug07G0221100
rosa_samantha	Rh4DG375600 Rh7AG363700 Rh7CG382500 Rh7DG358400
rosa_wichuraiana	Rw7G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	179
AciI	CCGC	3 cut(s)	83, 86, 363
AclI	AACGTT	1 cut(s)	607
AclWI	GGATC	1 cut(s)	49
AcyI	GRCGYC	2 cut(s)	34, 375
AfaI	GTAC	3 cut(s)	230, 470, 767
AfiI	CCNNNNNNNGG	1 cut(s)	327
AflIII	ACRYGT	2 cut(s)	177, 261
AgsI	TTSAA	4 cut(s)	316, 461, 554, 809
AjnI	CCWGG	1 cut(s)	342
AjuI	GAANNNNNNNTTGG	2 cut(s)	501, 533
AleI	CACNNNNGTG	1 cut(s)	24
AluBI	AGCT	4 cut(s)	133, 560, 587, 699
AluI	AGCT	4 cut(s)	133, 560, 587, 699
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	4 cut(s)	150, 156, 246, 889
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	2 cut(s)	160, 504
AoxI	GGCC	4 cut(s)	189, 214, 345, 676
Asp700I	GAANNNNTTC	1 cut(s)	833
AspA2I	CCTAGG	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	4 cut(s)	215, 330, 676, 860
AsuC2I	CCSGG	1 cut(s)	475
AsuHPI	GGTGA	2 cut(s)	55, 430
AsuII	TTCGAA	1 cut(s)	901
AvaI	CYCGRG	2 cut(s)	160, 504
AvaII	GGWCC	2 cut(s)	330, 860
AvrII	CCTAGG	1 cut(s)	464
BaeGI	GKGCMC	1 cut(s)	853
BarI	GAAGNNNNNNTAC	2 cut(s)	749, 781
BbsI	GAAGAC	3 cut(s)	29, 323, 800
Bbv12I	GWGCWC	1 cut(s)	300
BccI	CCATC	2 cut(s)	317, 428
BceAI	ACGGC	2 cut(s)	154, 869
BciT130I	CCWGG	1 cut(s)	344
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	475
BcoDI	GTCTC	4 cut(s)	150, 156, 246, 889
BfaI	CTAG	3 cut(s)	59, 465, 546
BfmI	CTRYAG	1 cut(s)	402
BglI	GCCNNNNNGGC	1 cut(s)	213
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	1 cut(s)	84
BlnI	CCTAGG	1 cut(s)	464
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	2 cut(s)	344, 475
Bme18I	GGWCC	2 cut(s)	330, 860
BmeT110I	CYCGRG	2 cut(s)	160, 504
BmgT120I	GGNCC	4 cut(s)	215, 330, 676, 860
BmiI	GGNNCC	3 cut(s)	128, 331, 332
BmrFI	CCNGG	2 cut(s)	344, 475
BmsI	GCATC	4 cut(s)	291, 414, 475, 671
BpiI	GAAGAC	3 cut(s)	29, 323, 800
BpmI	CTGGAG	2 cut(s)	113, 326
Bpu14I	TTCGAA	1 cut(s)	901
BpuMI	CCSGG	1 cut(s)	475
BsaHI	GRCGYC	2 cut(s)	34, 375
BsaI	GGTCTC	2 cut(s)	156, 889
BsaJI	CCNNGG	5 cut(s)	136, 192, 451, 464, 863
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse118I	RCCGGY	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	26
Bse3DI	GCAATG	2 cut(s)	84, 378
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	5 cut(s)	136, 192, 451, 464, 863
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseMI	GCAATG	2 cut(s)	84, 378
BseMII	CTCAG	5 cut(s)	268, 316, 398, 624, 806
BseNI	ACTGG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	853
Bsh1236I	CGCG	1 cut(s)	179
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	4 cut(s)	191, 216, 347, 678
BsiEI	CGRYCG	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	2 cut(s)	160, 504
BsiSI	CCGG	5 cut(s)	208, 245, 360, 372, 474
BslFI	GGGAC	2 cut(s)	237, 316
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	4 cut(s)	150, 156, 246, 889
BsmFI	GGGAC	2 cut(s)	237, 316
BsnI	GGCC	4 cut(s)	191, 216, 347, 678
Bso31I	GGTCTC	2 cut(s)	156, 889
BsoBI	CYCGRG	2 cut(s)	160, 504
Bsp119I	TTCGAA	1 cut(s)	901
Bsp1286I	GDGCHC	2 cut(s)	300, 853
Bsp1407I	TGTACA	2 cut(s)	228, 765
Bsp143I	GATC	7 cut(s)	54, 69, 105, 198, 406, 498, 595
BspACI	CCGC	3 cut(s)	83, 86, 363
BspANI	GGCC	4 cut(s)	191, 216, 347, 678
BspCNI	CTCAG	5 cut(s)	267, 315, 397, 625, 807
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	3 cut(s)	128, 331, 332
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	1 cut(s)	49
BspT104I	TTCGAA	1 cut(s)	901
BspTNI	GGTCTC	2 cut(s)	156, 889
BsrDI	GCAATG	2 cut(s)	84, 378
BsrFI	RCCGGY	1 cut(s)	207
BsrGI	TGTACA	2 cut(s)	228, 765
BsrI	ACTGG	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	207
BssECI	CCNNGG	5 cut(s)	136, 192, 451, 464, 863
BssMI	GATC	7 cut(s)	54, 69, 105, 198, 406, 498, 595
BssNI	GRCGYC	2 cut(s)	34, 375
BssT1I	CCWWGG	3 cut(s)	451, 464, 863
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	4 cut(s)	228, 773, 785, 799
BstACI	GRCGYC	2 cut(s)	34, 375
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstAUI	TGTACA	2 cut(s)	228, 765
BstBI	TTCGAA	1 cut(s)	901
BstC8I	GCNNGC	4 cut(s)	209, 397, 429, 589
BstDEI	CTNAG	6 cut(s)	254, 302, 384, 565, 633, 815
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	7 cut(s)	57, 72, 108, 201, 409, 501, 598
BstMAI	GTCTC	4 cut(s)	150, 156, 246, 889
BstMBI	GATC	7 cut(s)	54, 69, 105, 198, 406, 498, 595
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 83, 213, 288, 401
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	2 cut(s)	342, 473
BstSFI	CTRYAG	1 cut(s)	402
BstSLI	GKGCMC	1 cut(s)	853
BstUI	CGCG	1 cut(s)	179
BstV2I	GAAGAC	3 cut(s)	29, 323, 800
BstX2I	RGATCY	2 cut(s)	54, 406
BstYI	RGATCY	2 cut(s)	54, 406
BsuRI	GGCC	4 cut(s)	191, 216, 347, 678
BtgI	CCRYGG	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	4 cut(s)	209, 397, 429, 589
CfoI	GCGC	1 cut(s)	207
Cfr10I	RCCGGY	1 cut(s)	207
Cfr13I	GGNCC	4 cut(s)	215, 330, 676, 860
CseI	GACGC	2 cut(s)	23, 364
Csp6I	GTAC	3 cut(s)	229, 469, 766
CviAII	CATG	5 cut(s)	155, 262, 574, 670, 846
CviQI	GTAC	3 cut(s)	229, 469, 766
DdeI	CTNAG	6 cut(s)	254, 302, 384, 565, 633, 815
DpnI	GATC	7 cut(s)	56, 71, 107, 200, 408, 500, 597
DpnII	GATC	7 cut(s)	54, 69, 105, 198, 406, 498, 595
EciI	GGCGGA	2 cut(s)	101, 378
Eco130I	CCWWGG	3 cut(s)	451, 464, 863
Eco31I	GGTCTC	2 cut(s)	156, 889
Eco47I	GGWCC	2 cut(s)	330, 860
Eco88I	CYCGRG	2 cut(s)	160, 504
EcoO109I	RGGNCCY	2 cut(s)	215, 330
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	3 cut(s)	451, 464, 863
ErhI	CCWWGG	3 cut(s)	451, 464, 863
FaeI	CATG	5 cut(s)	158, 265, 577, 673, 849
FaqI	GGGAC	2 cut(s)	237, 316
FatI	CATG	5 cut(s)	154, 261, 573, 669, 845
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	1 cut(s)	436
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	3 cut(s)	59, 465, 546
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	1 cut(s)	84
GsuI	CTGGAG	2 cut(s)	113, 326
HaeIII	GGCC	4 cut(s)	191, 216, 347, 678
HapII	CCGG	5 cut(s)	208, 245, 360, 372, 474
HgaI	GACGC	2 cut(s)	23, 364
HhaI	GCGC	1 cut(s)	207
Hin1I	GRCGYC	2 cut(s)	34, 375
Hin1II	CATG	5 cut(s)	158, 265, 577, 673, 849
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	167
HindII	GTYRAC	1 cut(s)	167
HinfI	GANTC	4 cut(s)	143, 163, 366, 733
HpaII	CCGG	5 cut(s)	208, 245, 360, 372, 474
HphI	GGTGA	2 cut(s)	55, 430
Hpy166II	GTNNAC	2 cut(s)	167, 571
Hpy188I	TCNGA	9 cut(s)	105, 185, 196, 305, 627, 634, 742, 816, 929
Hpy8I	GTNNAC	2 cut(s)	167, 571
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	4 cut(s)	506, 746, 803, 930
HpyCH4III	ACNGT	4 cut(s)	228, 773, 785, 799
HpyCH4IV	ACGT	3 cut(s)	98, 607, 711
HpyCH4V	TGCA	3 cut(s)	404, 427, 911
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 83, 213, 288, 401
HpyF3I	CTNAG	6 cut(s)	254, 302, 384, 565, 633, 815
HpySE526I	ACGT	3 cut(s)	98, 607, 711
Hsp92I	GRCGYC	2 cut(s)	34, 375
Hsp92II	CATG	5 cut(s)	158, 265, 577, 673, 849
HspAI	GCGC	1 cut(s)	205
KflI	GGGWCCC	1 cut(s)	330
KroI	GCCGGC	1 cut(s)	207
KroNI	GCCGGC	1 cut(s)	209
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	7 cut(s)	54, 69, 105, 198, 406, 498, 595
LmnI	GCTCC	3 cut(s)	49, 132, 138
LweI	GCATC	4 cut(s)	291, 414, 475, 671
MaeI	CTAG	3 cut(s)	59, 465, 546
MaeII	ACGT	3 cut(s)	98, 607, 711
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	7 cut(s)	56, 71, 107, 200, 408, 500, 597
MboI	GATC	7 cut(s)	54, 69, 105, 198, 406, 498, 595
MboII	GAAGA	5 cut(s)	29, 328, 521, 769, 805
MflI	RGATCY	2 cut(s)	54, 406
MhlI	GDGCHC	2 cut(s)	300, 853
MluCI	AATT	3 cut(s)	581, 869, 906
MluI	ACGCGT	1 cut(s)	177
MlyI	GAGTC	3 cut(s)	152, 172, 360
MmeI	TCCRAC	2 cut(s)	499, 720
MnlI	CCTC	8 cut(s)	76, 117, 202, 311, 344, 414, 515, 628
MroNI	GCCGGC	1 cut(s)	207
MroXI	GAANNNNTTC	1 cut(s)	833
MseI	TTAA	1 cut(s)	491
MslI	CAYNNNNRTG	2 cut(s)	24, 77
MspI	CCGG	5 cut(s)	208, 245, 360, 372, 474
MspR9I	CCNGG	2 cut(s)	344, 475
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	5 cut(s)	31, 83, 213, 288, 401
NaeI	GCCGGC	1 cut(s)	209
NciI	CCSGG	1 cut(s)	475
NdeII	GATC	7 cut(s)	54, 69, 105, 198, 406, 498, 595
NgoMIV	GCCGGC	1 cut(s)	207
NlaIII	CATG	5 cut(s)	158, 265, 577, 673, 849
NlaIV	GGNNCC	3 cut(s)	128, 331, 332
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	265
NspV	TTCGAA	1 cut(s)	901
OliI	CACNNNNGTG	1 cut(s)	24
PaeR7I	CTCGAG	1 cut(s)	160
PciI	ACATGT	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PdiI	GCCGGC	1 cut(s)	209
PdmI	GAANNNNTTC	1 cut(s)	833
PfeI	GAWTC	1 cut(s)	733
PkrI	GCNGC	1 cut(s)	85
Ple19I	CGATCG	1 cut(s)	108
PleI	GAGTC	3 cut(s)	151, 171, 360
PpsI	GAGTC	3 cut(s)	151, 171, 360
PpuMI	RGGWCCY	1 cut(s)	330
PscI	ACATGT	1 cut(s)	261
Psp1406I	AACGTT	1 cut(s)	607
Psp5II	RGGWCCY	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	3 cut(s)	128, 331, 332
PspPI	GGNCC	4 cut(s)	215, 330, 676, 860
PspPPI	RGGWCCY	1 cut(s)	330
PspXI	VCTCGAGB	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	2 cut(s)	54, 406
PvuI	CGATCG	1 cut(s)	108
RsaI	GTAC	3 cut(s)	230, 470, 767
RsaNI	GTAC	3 cut(s)	229, 469, 766
RseI	CAYNNNNRTG	2 cut(s)	24, 77
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	7 cut(s)	54, 69, 105, 198, 406, 498, 595
Sau96I	GGNCC	4 cut(s)	215, 330, 676, 860
SchI	GAGTC	3 cut(s)	152, 172, 360
ScrFI	CCNGG	2 cut(s)	344, 475
SduI	GDGCHC	2 cut(s)	300, 853
SfaNI	GCATC	4 cut(s)	291, 414, 475, 671
SfcI	CTRYAG	1 cut(s)	402
Sfr274I	CTCGAG	1 cut(s)	160
SfuI	TTCGAA	1 cut(s)	901
SinI	GGWCC	2 cut(s)	330, 860
SlaI	CTCGAG	1 cut(s)	160
SmiMI	CAYNNNNRTG	2 cut(s)	24, 77
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	3 cut(s)	581, 869, 906
SsiI	CCGC	3 cut(s)	83, 86, 363
SspMI	CTAG	3 cut(s)	59, 465, 546
StyD4I	CCNGG	2 cut(s)	342, 473
StyI	CCWWGG	3 cut(s)	451, 464, 863
TaaI	ACNGT	4 cut(s)	228, 773, 785, 799
TaiI	ACGT	3 cut(s)	101, 610, 714
TaqI	TCGA	4 cut(s)	68, 108, 161, 901
TaqII	GACCGA	2 cut(s)	138, 335
TasI	AATT	3 cut(s)	581, 869, 906
TatI	WGTACW	2 cut(s)	228, 765
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	733
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	1 cut(s)	26
TseFI	GTSAC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	17, 746
TspRI	CASTG	1 cut(s)	26
VpaK11BI	GGWCC	2 cut(s)	330, 860
XceI	RCATGY	1 cut(s)	265
XhoI	CTCGAG	1 cut(s)	160
XmaJI	CCTAGG	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	833
XspI	CTAG	3 cut(s)	59, 465, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.