Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008637

Physical Location & Seq

Genomic Coordinates Reverse (-)

23056251 .. 23057841

Gene Structure 1591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001923

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAAACCGAGCCAAGAGCACGGGCGTCAACACGCCCCCACAAAGACCATCTCAGCAATGGTGGCCGAAACGACGACGTTTCCAATCGACCTCATGAAGACGAGGCTCCAGCTCCACGGCGAGTCCCGGTCTCTGGGCTCGACCCGGCCCACCAACGCGTTCCGGGTGGCCTCGGAAATCGTGCGCCGGGAAGGCCCTCTGGGACTGTACAAGGGTTTGTCGCCGGCGATTCTCAGGCACCTTTTTTACACGCCTGTTCGTATCGTCGGCTACGAGCACCTCAGAAACTCTTTGAAAACCGACGGTGGGTCCCTCTCTCTCGGGGCTAAAGCCCTCTCCGGCGGACTCTCCGGCGTCATTGCTCAGTTGGTGGCAAGCCCGGCAGATCTTGTAAAGGTGAGGATGCAAGCAGATGGTCGTTTTGTGAGCCAAGGCTTTCAACCTAGGTACTCAGGGTGTTTCGATGCTTTAAACAAGATCGCGCGAGCAGAAGGTGTTGGAGGACTTTGGAAAGGGGTTTTCCCTAATGTTCAAAGAGCTTTCTTAATTTCTGAGGATAATATATATGCCCACACATTAGCATCAATCATGTCGGGCCTTTCGGCGACTGCTTTAAGCTGTCCAGCAGACGTGATAAAGACGAGAATGATGAATCAGTCAGAAATTAAGGAAGGGAAGATTATGTACAGCAGTTCTTATGATTGTCTTGTGAAGACAGTCAAAGTTGAAGGTCTGAGAGCTCTGTGGAAAGGGTTCTTTCCTACATGGGCACGGCTTGGGCCTTGGCAATTTGTTTTCTGGGTCTCGTATGAGAAGTTTCGACAAATTGCAGGGTTTTCTTCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051881 GO:0055085 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

283

Amino Acids

31.07

Weight (kDa)

9.94

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	17 - 100	4.8e-18	Mitochondrial carrier protein
Mito_carr	PF00153	105 - 182	3.5e-18	Mitochondrial carrier protein
Mito_carr	PF00153	185 - 276	2.8e-22	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14140
fragaria_vesca	FvH4_4g31010 FvH4_4g31020
malus_domestica	MD13G1068800.v1.1 MD13G1255700.v1.1 MD16G1069100.v1.1
prunus_persica	Prupe.1G278100_v2.0.a1
pyrus_communis	pycom13g06160
rosa_chinensis	RchiOBHm_Chr4g0439381 RchiOBHm_Chr7g0223901
rosa_laevigata	RLG00000001923 RLG00000006275
rosa_multiflora	Rmu_co8146616.1_g000001 Rmu_sc0002469.1_g000001 Rmu_sc0004540.1_g000015
rosa_roxburghii	Rroxscaffold_3G00235200 Rroxscaffold_5G00380320
rosa_rugosa	Rorug07G0221100
rosa_samantha	Rh4DG375600 Rh7AG363700 Rh7CG382500 Rh7DG358400
rosa_wichuraiana	Rw7G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	237
AccII	CGCG	3 cut(s)	158, 482, 484
AciI	CCGC	1 cut(s)	342
AcoI	YGGCCR	1 cut(s)	63
AcyI	GRCGYC	2 cut(s)	25, 354
AfaI	GTAC	3 cut(s)	209, 449, 686
AfiI	CCNNNNNNNGG	2 cut(s)	133, 306
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	4 cut(s)	295, 440, 533, 728
AhdI	GACNNNNNGTC	1 cut(s)	307
AjiI	CACGTC	1 cut(s)	631
AluBI	AGCT	4 cut(s)	112, 539, 618, 740
AluI	AGCT	4 cut(s)	112, 539, 618, 740
Alw21I	GWGCWC	3 cut(s)	21, 279, 742
Alw26I	GTCTC	2 cut(s)	135, 808
Ama87I	CYCGRG	1 cut(s)	320
AoxI	GGCC	6 cut(s)	63, 146, 168, 193, 595, 779
Asp700I	GAANNNNTTC	1 cut(s)	752
AspA2I	CCTAGG	1 cut(s)	443
AspLEI	GCGC	2 cut(s)	186, 484
AspS9I	GGNCC	5 cut(s)	147, 194, 309, 595, 779
AsuC2I	CCSGG	5 cut(s)	127, 145, 164, 188, 380
AsuHPI	GGTGA	1 cut(s)	409
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	309
AvrII	CCTAGG	1 cut(s)	443
BaeGI	GKGCMC	1 cut(s)	772
BanI	GGYRCC	1 cut(s)	237
BanII	GRGCYC	2 cut(s)	140, 742
BarI	GAAGNNNNNNTAC	2 cut(s)	668, 700
BbsI	GAAGAC	2 cut(s)	104, 719
Bbv12I	GWGCWC	3 cut(s)	21, 279, 742
BccI	CCATC	2 cut(s)	56, 407
BceAI	ACGGC	2 cut(s)	133, 788
BcnI	CCSGG	5 cut(s)	127, 145, 164, 188, 380
BcoDI	GTCTC	2 cut(s)	135, 808
BfaI	CTAG	1 cut(s)	444
BglI	GCCNNNNNGGC	1 cut(s)	192
BglII	AGATCT	1 cut(s)	385
BlnI	CCTAGG	1 cut(s)	443
Bme1390I	CCNGG	5 cut(s)	127, 145, 164, 188, 380
Bme18I	GGWCC	1 cut(s)	309
BmeRI	GACNNNNNGTC	1 cut(s)	307
BmeT110I	CYCGRG	1 cut(s)	320
BmgBI	CACGTC	1 cut(s)	631
BmgT120I	GGNCC	5 cut(s)	147, 194, 309, 595, 779
BmiI	GGNNCC	4 cut(s)	107, 239, 310, 311
BmrFI	CCNGG	5 cut(s)	127, 145, 164, 188, 380
BmsI	GCATC	3 cut(s)	393, 454, 590
BpiI	GAAGAC	2 cut(s)	104, 719
BpmI	CTGGAG	1 cut(s)	92
BpuMI	CCSGG	5 cut(s)	127, 145, 164, 188, 380
BsaHI	GRCGYC	2 cut(s)	25, 354
BsaI	GGTCTC	2 cut(s)	135, 808
BsaJI	CCNNGG	5 cut(s)	115, 171, 430, 443, 782
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 306
Bse118I	RCCGGY	1 cut(s)	223
Bse3DI	GCAATG	2 cut(s)	63, 357
BseDI	CCNNGG	5 cut(s)	115, 171, 430, 443, 782
BseGI	GGATG	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	133, 306
BseMI	GCAATG	2 cut(s)	63, 357
BseMII	CTCAG	7 cut(s)	66, 247, 295, 377, 465, 543, 725
BseSI	GKGCMC	1 cut(s)	772
Bsh1236I	CGCG	3 cut(s)	158, 482, 484
BshFI	GGCC	6 cut(s)	65, 148, 170, 195, 597, 781
BshNI	GGYRCC	1 cut(s)	237
BsiHKAI	GWGCWC	3 cut(s)	21, 279, 742
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	8 cut(s)	127, 145, 163, 187, 224, 339, 351, 380
BslFI	GGGAC	3 cut(s)	109, 216, 295
BslI	CCNNNNNNNGG	2 cut(s)	133, 306
BsmAI	GTCTC	2 cut(s)	135, 808
BsmFI	GGGAC	3 cut(s)	109, 216, 295
BsnI	GGCC	6 cut(s)	65, 148, 170, 195, 597, 781
Bso31I	GGTCTC	2 cut(s)	135, 808
BsoBI	CYCGRG	1 cut(s)	320
Bsp1286I	GDGCHC	5 cut(s)	21, 140, 279, 742, 772
Bsp1407I	TGTACA	2 cut(s)	207, 684
Bsp143I	GATC	2 cut(s)	385, 477
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	6 cut(s)	65, 148, 170, 195, 597, 781
BspCNI	CTCAG	7 cut(s)	65, 246, 294, 376, 464, 544, 726
BspFNI	CGCG	3 cut(s)	158, 482, 484
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	4 cut(s)	107, 239, 310, 311
BspT107I	GGYRCC	1 cut(s)	237
BspTNI	GGTCTC	2 cut(s)	135, 808
BsrDI	GCAATG	2 cut(s)	63, 357
BsrFI	RCCGGY	1 cut(s)	223
BsrGI	TGTACA	2 cut(s)	207, 684
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	5 cut(s)	115, 171, 430, 443, 782
BssMI	GATC	2 cut(s)	385, 477
BssNI	GRCGYC	2 cut(s)	25, 354
BssT1I	CCWWGG	3 cut(s)	430, 443, 782
Bst4CI	ACNGT	3 cut(s)	207, 305, 718
BstACI	GRCGYC	2 cut(s)	25, 354
BstAUI	TGTACA	2 cut(s)	207, 684
BstC8I	GCNNGC	4 cut(s)	225, 376, 408, 486
BstDEI	CTNAG	7 cut(s)	52, 233, 281, 363, 451, 552, 734
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	408
BstFNI	CGCG	3 cut(s)	158, 482, 484
BstHHI	GCGC	2 cut(s)	186, 484
BstKTI	GATC	2 cut(s)	388, 480
BstMAI	GTCTC	2 cut(s)	135, 808
BstMBI	GATC	2 cut(s)	385, 477
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 192, 380
BstSCI	CCNGG	5 cut(s)	125, 143, 162, 186, 378
BstSLI	GKGCMC	1 cut(s)	772
BstUI	CGCG	3 cut(s)	158, 482, 484
BstV2I	GAAGAC	2 cut(s)	104, 719
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	6 cut(s)	65, 148, 170, 195, 597, 781
BtgI	CCRYGG	1 cut(s)	115
BtrI	CACGTC	1 cut(s)	631
BtsCI	GGATG	1 cut(s)	408
Cac8I	GCNNGC	4 cut(s)	225, 376, 408, 486
CciI	TCATGA	1 cut(s)	93
CfoI	GCGC	2 cut(s)	186, 484
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	5 cut(s)	147, 194, 309, 595, 779
CseI	GACGC	2 cut(s)	14, 343
Csp6I	GTAC	3 cut(s)	208, 448, 685
CviAII	CATG	3 cut(s)	94, 589, 765
CviQI	GTAC	3 cut(s)	208, 448, 685
DdeI	CTNAG	7 cut(s)	52, 233, 281, 363, 451, 552, 734
DpnI	GATC	2 cut(s)	387, 479
DpnII	GATC	2 cut(s)	385, 477
DraI	TTTAAA	1 cut(s)	471
DriI	GACNNNNNGTC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	63
Eam1105I	GACNNNNNGTC	1 cut(s)	307
EciI	GGCGGA	1 cut(s)	357
Ecl136II	GAGCTC	1 cut(s)	740
Eco130I	CCWWGG	3 cut(s)	430, 443, 782
Eco24I	GRGCYC	2 cut(s)	140, 742
Eco31I	GGTCTC	2 cut(s)	135, 808
Eco47I	GGWCC	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	740
Eco88I	CYCGRG	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	740
EcoO109I	RGGNCCY	2 cut(s)	194, 309
EcoT14I	CCWWGG	3 cut(s)	430, 443, 782
EcoT38I	GRGCYC	2 cut(s)	140, 742
ErhI	CCWWGG	3 cut(s)	430, 443, 782
FaeI	CATG	3 cut(s)	97, 592, 768
FaiI	YATR	9 cut(s)	95, 563, 565, 567, 590, 683, 699, 766, 810
FaqI	GGGAC	3 cut(s)	109, 216, 295
FatI	CATG	3 cut(s)	93, 588, 764
FokI	GGATG	1 cut(s)	415
FriOI	GRGCYC	2 cut(s)	140, 742
FspBI	CTAG	1 cut(s)	444
GlaI	GCGC	2 cut(s)	185, 483
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	6 cut(s)	65, 148, 170, 195, 597, 781
HapII	CCGG	8 cut(s)	127, 145, 163, 187, 224, 339, 351, 380
HgaI	GACGC	2 cut(s)	14, 343
HhaI	GCGC	2 cut(s)	186, 484
Hin1I	GRCGYC	2 cut(s)	25, 354
Hin1II	CATG	3 cut(s)	97, 592, 768
Hin6I	GCGC	2 cut(s)	184, 482
HinP1I	GCGC	2 cut(s)	184, 482
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HinfI	GANTC	4 cut(s)	122, 229, 345, 652
HpaII	CCGG	8 cut(s)	127, 145, 163, 187, 224, 339, 351, 380
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	6 cut(s)	175, 284, 553, 661, 735, 848
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	29
Hpy99I	CGWCG	4 cut(s)	76, 79, 269, 305
HpyAV	CCTTC	4 cut(s)	185, 485, 665, 722
HpyCH4III	ACNGT	3 cut(s)	207, 305, 718
HpyCH4IV	ACGT	2 cut(s)	77, 630
HpyCH4V	TGCA	2 cut(s)	406, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 192, 380
HpyF3I	CTNAG	7 cut(s)	52, 233, 281, 363, 451, 552, 734
HpySE526I	ACGT	2 cut(s)	77, 630
Hsp92I	GRCGYC	2 cut(s)	25, 354
Hsp92II	CATG	3 cut(s)	97, 592, 768
HspAI	GCGC	2 cut(s)	184, 482
KflI	GGGWCCC	1 cut(s)	309
KroI	GCCGGC	1 cut(s)	223
KroNI	GCCGGC	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	385, 477
LmnI	GCTCC	2 cut(s)	111, 117
LweI	GCATC	3 cut(s)	393, 454, 590
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	2 cut(s)	77, 630
MalI	GATC	2 cut(s)	387, 479
MboI	GATC	2 cut(s)	385, 477
MboII	GAAGA	4 cut(s)	109, 688, 724, 831
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	5 cut(s)	21, 140, 279, 742, 772
MluCI	AATT	4 cut(s)	546, 663, 788, 825
MluI	ACGCGT	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	131, 339
MmeI	TCCRAC	1 cut(s)	478
MreI	CGCCGGCG	1 cut(s)	223
MroNI	GCCGGC	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	752
MseI	TTAA	4 cut(s)	470, 545, 614, 666
MspI	CCGG	8 cut(s)	127, 145, 163, 187, 224, 339, 351, 380
MspR9I	CCNGG	5 cut(s)	127, 145, 164, 188, 380
MvnI	CGCG	3 cut(s)	158, 482, 484
MwoI	GCNNNNNNNGC	3 cut(s)	62, 192, 380
NaeI	GCCGGC	1 cut(s)	225
NciI	CCSGG	5 cut(s)	127, 145, 164, 188, 380
NdeII	GATC	2 cut(s)	385, 477
NgoMIV	GCCGGC	1 cut(s)	223
NlaIII	CATG	3 cut(s)	97, 592, 768
NlaIV	GGNNCC	4 cut(s)	107, 239, 310, 311
PagI	TCATGA	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PdiI	GCCGGC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	752
PfeI	GAWTC	2 cut(s)	229, 652
PleI	GAGTC	2 cut(s)	130, 339
PpsI	GAGTC	2 cut(s)	130, 339
PpuMI	RGGWCCY	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	742
Psp5II	RGGWCCY	1 cut(s)	309
PspN4I	GGNNCC	4 cut(s)	107, 239, 310, 311
PspPI	GGNCC	5 cut(s)	147, 194, 309, 595, 779
PspPPI	RGGWCCY	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	3 cut(s)	209, 449, 686
RsaNI	GTAC	3 cut(s)	208, 448, 685
SacI	GAGCTC	1 cut(s)	742
SaqAI	TTAA	4 cut(s)	470, 545, 614, 666
Sau3AI	GATC	2 cut(s)	385, 477
Sau96I	GGNCC	5 cut(s)	147, 194, 309, 595, 779
SchI	GAGTC	2 cut(s)	131, 339
ScrFI	CCNGG	5 cut(s)	127, 145, 164, 188, 380
SduI	GDGCHC	5 cut(s)	21, 140, 279, 742, 772
SfaNI	GCATC	3 cut(s)	393, 454, 590
SgrAI	CRCCGGYG	1 cut(s)	223
SinI	GGWCC	1 cut(s)	309
Sse9I	AATT	4 cut(s)	546, 663, 788, 825
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	1 cut(s)	444
SstI	GAGCTC	1 cut(s)	742
StyD4I	CCNGG	5 cut(s)	125, 143, 162, 186, 378
StyI	CCWWGG	3 cut(s)	430, 443, 782
TaaI	ACNGT	3 cut(s)	207, 305, 718
TaiI	ACGT	2 cut(s)	80, 633
TaqI	TCGA	4 cut(s)	87, 140, 462, 820
TasI	AATT	4 cut(s)	546, 663, 788, 825
TatI	WGTACW	2 cut(s)	207, 684
TfiI	GAWTC	2 cut(s)	229, 652
Tru1I	TTAA	4 cut(s)	470, 545, 614, 666
Tru9I	TTAA	4 cut(s)	470, 545, 614, 666
TspDTI	ATGAA	3 cut(s)	17, 110, 665
VpaK11BI	GGWCC	1 cut(s)	309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XmaJI	CCTAGG	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	752
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.