RchiOBHm_Chr4g0439381

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0008637
Physical Location & Seq
Reverse (-)
61870948 .. 61871367
420 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40745

Sequence Viewer

Length: 420 bp
ATGGGGGAATTAGCTTGTTACGATCATGCAAAACGTTTTGTTATCAATATTCAGATTTCTGAGGATAATATATATGCCCACACGTTAGCATCAATCATGTCGGGCCTTTCAGCGACTGCTTTGAGCTGTCCAGCAGACGTGGTAAAGACGAGAATGATGAATCAATCAGAATTCAAGGAAGGTAAGATTATGTACAGCAGTTCTTATGATTGTCTTGTGAAGACTGTCAAAGTTGAAGGTCTGAGAGCTCTGTGGACAGGGTTCTTTCCTACATGGGCAGGCTTGGGCCTTGGCAATTTGTGTTCTGGGTCTCGTATGAGAGGTTTCGACAAATTGCAGGGTTTTCTTCCTTCTGACGATGAACCATTAGATCGACTCTCACGTTACAGATTGTCATTGATTGTTTGTCGTGGCACATGA

Protein Analysis

139

Amino Acids

15.44

Weight (kDa)

8.3

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 21 - 99 3.4e-17 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 34
AcsI RAATTY 1 cut(s) 170
AfaI GTAC 1 cut(s) 194
AflIII ACRYGT 1 cut(s) 81
AgsI TTSAA 2 cut(s) 175, 236
AjiI CACGTC 1 cut(s) 139
AluBI AGCT 3 cut(s) 14, 126, 248
AluI AGCT 3 cut(s) 14, 126, 248
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 315
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 2 cut(s) 103, 286
ApoI RAATTY 1 cut(s) 170
AspS9I GGNCC 2 cut(s) 103, 286
BanII GRGCYC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 315
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 2 cut(s) 103, 286
BmsI GCATC 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 227
BsaI GGTCTC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 289
BseMII CTCAG 2 cut(s) 51, 233
BshFI GGCC 2 cut(s) 105, 288
BsiHKAI GWGCWC 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 315
BsnI GGCC 2 cut(s) 105, 288
Bso31I GGTCTC 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 250
Bsp1407I TGTACA 1 cut(s) 192
Bsp143I GATC 2 cut(s) 22, 370
BspANI GGCC 2 cut(s) 105, 288
BspCNI CTCAG 2 cut(s) 52, 234
BspTNI GGTCTC 1 cut(s) 315
BsrGI TGTACA 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 2 cut(s) 22, 370
BssT1I CCWWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 226
BstAUI TGTACA 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 2 cut(s) 60, 242
BstKTI GATC 2 cut(s) 25, 373
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 2 cut(s) 22, 370
BstV2I GAAGAC 1 cut(s) 227
BsuRI GGCC 2 cut(s) 105, 288
BtrI CACGTC 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 280
CaiI CAGNNNCTG 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 103, 286
Csp6I GTAC 1 cut(s) 193
CviAII CATG 4 cut(s) 26, 97, 273, 417
CviJI RGCY 6 cut(s) 14, 105, 126, 248, 282, 288
CviKI_1 RGCY 6 cut(s) 14, 105, 126, 248, 282, 288
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 2 cut(s) 60, 242
DpnI GATC 2 cut(s) 24, 372
DpnII GATC 2 cut(s) 22, 370
Ecl136II GAGCTC 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 315
Eco53kI GAGCTC 1 cut(s) 248
EcoICRI GAGCTC 1 cut(s) 248
EcoRI GAATTC 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 4 cut(s) 29, 100, 276, 420
FatI CATG 4 cut(s) 25, 96, 272, 416
FriOI GRGCYC 1 cut(s) 250
HaeIII GGCC 2 cut(s) 105, 288
Hin1II CATG 4 cut(s) 29, 100, 276, 420
HinfI GANTC 2 cut(s) 160, 375
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 5 cut(s) 54, 61, 169, 243, 355
Hpy8I GTNNAC 1 cut(s) 255
HpyAV CCTTC 3 cut(s) 173, 230, 360
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 4 cut(s) 34, 83, 138, 382
HpyCH4V TGCA 2 cut(s) 29, 337
HpyF3I CTNAG 2 cut(s) 60, 242
HpySE526I ACGT 4 cut(s) 34, 83, 138, 382
Hsp92II CATG 4 cut(s) 29, 100, 276, 420
Kzo9I GATC 2 cut(s) 22, 370
LpnPI CCDG 5 cut(s) 144, 243, 264, 291, 323
LweI GCATC 1 cut(s) 98
MaeII ACGT 4 cut(s) 34, 83, 138, 382
MaeIII GTNAC 2 cut(s) 17, 383
MalI GATC 2 cut(s) 24, 372
MboI GATC 2 cut(s) 22, 370
MboII GAAGA 2 cut(s) 232, 338
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 4 cut(s) 8, 170, 295, 332
MlyI GAGTC 1 cut(s) 369
MnlI CCTC 2 cut(s) 55, 314
NdeII GATC 2 cut(s) 22, 370
NlaIII CATG 4 cut(s) 29, 100, 276, 420
PcsI WCGNNNNNNNCGW 1 cut(s) 379
PfeI GAWTC 1 cut(s) 160
PleI GAGTC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 369
Psp124BI GAGCTC 1 cut(s) 250
Psp1406I AACGTT 1 cut(s) 34
PspPI GGNCC 2 cut(s) 103, 286
PstNI CAGNNNCTG 1 cut(s) 116
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SacI GAGCTC 1 cut(s) 250
Sau3AI GATC 2 cut(s) 22, 370
Sau96I GGNCC 2 cut(s) 103, 286
SchI GAGTC 1 cut(s) 369
SduI GDGCHC 1 cut(s) 250
SfaNI GCATC 1 cut(s) 98
Sse9I AATT 4 cut(s) 8, 170, 295, 332
SspI AATATT 1 cut(s) 49
SstI GAGCTC 1 cut(s) 250
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 4 cut(s) 37, 86, 141, 385
TaqI TCGA 2 cut(s) 327, 373
TasI AATT 4 cut(s) 8, 170, 295, 332
TatI WGTACW 1 cut(s) 192
TfiI GAWTC 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 173, 375
XapI RAATTY 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.