Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008637

Physical Location & Seq

Genomic Coordinates Reverse (-)

30362448 .. 30364394

Gene Structure 1947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAAACCGAGCGAAGAACACGGGCGTCAACACGCCCCCACAAAGATCCTGCTGACATCGATCTCAGCAATGGTCGCCGAAACGACGACGTTTCCGATCGACCTAGCAAAGACGAGGCTCCAGCTCCACGGCGAGTCGCGGGCTCTGGGCTCGACCCGGCCCACCAACGCGTTCCGGGTGGCCTCGGAAATCGTGCGCCGGGAAGGCCCTCTGGGACTGTACAAGGGTCTGTCTCCGGCGATCCTCAGGCACATGTTCTACACGCCCATTCGCATCGTCGGCTACGAGCACCTCAGAAACTCTTTGACAACCGATGGTGGGTCCCTCTCTCTCCCCGCTAAAGCCATCTCCGGCGGACTCTCCGGCGTCGTTGCTCAGTTGGTGGCAAGCCCTGCAGATCTTGTAAAGGTGAGGATGCAAGCAGATGGTCGTTCTGTGAGCCAAGGCTTTCAACCTAGGTACTCAGGGTGTTTTGATGCTTTAAGCAAGATCACCCGAGCAGAAGGTGTTGGAGGACTTTGGAAAGGGGTTTTCCCTAATGTTCAAAGAGCTTTCTTAGTGAACATGGGAGAATTAGCTTGCTATGATCATGCAAAGCGTTTTGTTATCAGTAATCAGATTTCTGAGGATAATATATATGCCCACACATTAGCATCAATTTTGTCAGGGCTTTCAGCGACTGCTTTGAGCTGTCCGGCAGACGTGGTGAAGACGAGAATGATGAATCAGTCGGAAATCAAGGTAGGGAAGATTATGTACAGCAGTTCTTATGACTGTCTTGTGAAGACTGTCAAAGTTGAAGGTCTGAGAGCACTATGGAAAGGATTCTTTCCTACATGGGCACGACTTGGACCTTGGCAATTTGTGTTCTGGGTCTCGTATGAGAAGTTTCGACAAATTGCAGGGTTTTCTTCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051881 GO:0055085 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

307

Amino Acids

33.61

Weight (kDa)

9.78

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	12 - 104	1.6e-19	Mitochondrial carrier protein
Mito_carr	PF00153	109 - 204	2.3e-23	Mitochondrial carrier protein
Mito_carr	PF00153	209 - 300	5.4e-22	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14140
fragaria_vesca	FvH4_4g31010 FvH4_4g31020
malus_domestica	MD13G1068800.v1.1 MD13G1255700.v1.1 MD16G1069100.v1.1
prunus_persica	Prupe.1G278100_v2.0.a1
pyrus_communis	pycom13g06160
rosa_chinensis	RchiOBHm_Chr4g0439381 RchiOBHm_Chr7g0223901
rosa_laevigata	RLG00000001923 RLG00000006275
rosa_multiflora	Rmu_co8146616.1_g000001 Rmu_sc0002469.1_g000001 Rmu_sc0004540.1_g000015
rosa_roxburghii	Rroxscaffold_3G00235200 Rroxscaffold_5G00380320
rosa_rugosa	Rorug07G0221100
rosa_samantha	Rh4DG375600 Rh7AG363700 Rh7CG382500 Rh7DG358400
rosa_wichuraiana	Rw7G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	139, 170
AciI	CCGC	3 cut(s)	139, 336, 354
AclWI	GGATC	2 cut(s)	40, 235
AcyI	GRCGYC	2 cut(s)	25, 366
AfaI	GTAC	3 cut(s)	221, 461, 758
AfiI	CCNNNNNNNGG	1 cut(s)	318
AflIII	ACRYGT	2 cut(s)	168, 252
AgsI	TTSAA	3 cut(s)	452, 545, 800
AjiI	CACGTC	1 cut(s)	703
AluBI	AGCT	4 cut(s)	124, 551, 578, 690
AluI	AGCT	4 cut(s)	124, 551, 578, 690
Alw21I	GWGCWC	2 cut(s)	291, 814
Alw26I	GTCTC	2 cut(s)	237, 880
AlwI	GGATC	2 cut(s)	40, 235
AlwNI	CAGNNNCTG	1 cut(s)	680
Ama87I	CYCGRG	1 cut(s)	495
AoxI	GGCC	3 cut(s)	158, 180, 205
Asp700I	GAANNNNTTC	1 cut(s)	824
AspA2I	CCTAGG	1 cut(s)	455
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	4 cut(s)	159, 206, 321, 851
AsuC2I	CCSGG	3 cut(s)	157, 176, 200
AsuHPI	GGTGA	3 cut(s)	421, 484, 718
AvaI	CYCGRG	1 cut(s)	495
AvaII	GGWCC	2 cut(s)	321, 851
AvrII	CCTAGG	1 cut(s)	455
AxyI	CCTNAGG	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	844
BanII	GRGCYC	2 cut(s)	145, 152
BarI	GAAGNNNNNNTAC	2 cut(s)	740, 772
BbsI	GAAGAC	2 cut(s)	716, 791
Bbv12I	GWGCWC	2 cut(s)	291, 814
BccI	CCATC	3 cut(s)	308, 353, 419
BceAI	ACGGC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	586
BcnI	CCSGG	3 cut(s)	157, 176, 200
BcoDI	GTCTC	2 cut(s)	237, 880
BfaI	CTAG	2 cut(s)	104, 456
BfmI	CTRYAG	1 cut(s)	393
BglI	GCCNNNNNGGC	1 cut(s)	204
BglII	AGATCT	1 cut(s)	397
BlnI	CCTAGG	1 cut(s)	455
Bme1390I	CCNGG	3 cut(s)	157, 176, 200
Bme18I	GGWCC	2 cut(s)	321, 851
BmeT110I	CYCGRG	1 cut(s)	495
BmgBI	CACGTC	1 cut(s)	703
BmgT120I	GGNCC	4 cut(s)	159, 206, 321, 851
BmiI	GGNNCC	3 cut(s)	119, 322, 323
BmrFI	CCNGG	3 cut(s)	157, 176, 200
BmsI	GCATC	4 cut(s)	282, 405, 466, 662
BpiI	GAAGAC	2 cut(s)	716, 791
BpmI	CTGGAG	1 cut(s)	104
BpuMI	CCSGG	3 cut(s)	157, 176, 200
Bsa29I	ATCGAT	1 cut(s)	59
BsaHI	GRCGYC	2 cut(s)	25, 366
BsaI	GGTCTC	1 cut(s)	880
BsaJI	CCNNGG	5 cut(s)	127, 183, 442, 455, 854
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse21I	CCTNAGG	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	75
BseCI	ATCGAT	1 cut(s)	59
BseDI	CCNNGG	5 cut(s)	127, 183, 442, 455, 854
BseGI	GGATG	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	7 cut(s)	78, 259, 307, 389, 477, 615, 797
BseSI	GKGCMC	1 cut(s)	844
Bsh1236I	CGCG	2 cut(s)	139, 170
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	160, 182, 207
BshVI	ATCGAT	1 cut(s)	59
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	2 cut(s)	291, 814
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	7 cut(s)	157, 175, 199, 236, 351, 363, 695
BslFI	GGGAC	2 cut(s)	228, 307
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmAI	GTCTC	2 cut(s)	237, 880
BsmFI	GGGAC	2 cut(s)	228, 307
BsnI	GGCC	3 cut(s)	160, 182, 207
Bso31I	GGTCTC	1 cut(s)	880
BsoBI	CYCGRG	1 cut(s)	495
Bsp1286I	GDGCHC	5 cut(s)	145, 152, 291, 814, 844
Bsp1407I	TGTACA	2 cut(s)	219, 756
Bsp143I	GATC	7 cut(s)	45, 60, 96, 240, 397, 489, 586
BspACI	CCGC	3 cut(s)	139, 336, 354
BspANI	GGCC	3 cut(s)	160, 182, 207
BspCNI	CTCAG	7 cut(s)	77, 258, 306, 388, 476, 616, 798
BspDI	ATCGAT	1 cut(s)	59
BspFNI	CGCG	2 cut(s)	139, 170
BspLI	GGNNCC	3 cut(s)	119, 322, 323
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	2 cut(s)	40, 235
BspTNI	GGTCTC	1 cut(s)	880
BsrDI	GCAATG	1 cut(s)	75
BsrGI	TGTACA	2 cut(s)	219, 756
BssECI	CCNNGG	5 cut(s)	127, 183, 442, 455, 854
BssMI	GATC	7 cut(s)	45, 60, 96, 240, 397, 489, 586
BssNI	GRCGYC	2 cut(s)	25, 366
BssT1I	CCWWGG	3 cut(s)	442, 455, 854
Bst4CI	ACNGT	3 cut(s)	219, 776, 790
BstACI	GRCGYC	2 cut(s)	25, 366
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstAUI	TGTACA	2 cut(s)	219, 756
BstC8I	GCNNGC	4 cut(s)	141, 388, 420, 580
BstDEI	CTNAG	8 cut(s)	64, 245, 293, 375, 463, 556, 624, 806
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	420
BstFNI	CGCG	2 cut(s)	139, 170
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	7 cut(s)	48, 63, 99, 243, 400, 492, 589
BstMAI	GTCTC	2 cut(s)	237, 880
BstMBI	GATC	7 cut(s)	45, 60, 96, 240, 397, 489, 586
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 204, 279, 392
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	3 cut(s)	155, 174, 198
BstSFI	CTRYAG	1 cut(s)	393
BstSLI	GKGCMC	1 cut(s)	844
BstUI	CGCG	2 cut(s)	139, 170
BstV2I	GAAGAC	2 cut(s)	716, 791
BstX2I	RGATCY	2 cut(s)	45, 397
BstYI	RGATCY	2 cut(s)	45, 397
Bsu15I	ATCGAT	1 cut(s)	59
Bsu36I	CCTNAGG	1 cut(s)	245
BsuRI	GGCC	3 cut(s)	160, 182, 207
BsuTUI	ATCGAT	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	127
BtrI	CACGTC	1 cut(s)	703
BtsCI	GGATG	1 cut(s)	420
Cac8I	GCNNGC	4 cut(s)	141, 388, 420, 580
CaiI	CAGNNNCTG	1 cut(s)	680
CfoI	GCGC	1 cut(s)	198
Cfr13I	GGNCC	4 cut(s)	159, 206, 321, 851
ClaI	ATCGAT	1 cut(s)	59
CseI	GACGC	2 cut(s)	14, 355
Csp6I	GTAC	3 cut(s)	220, 460, 757
CviAII	CATG	4 cut(s)	253, 565, 590, 837
CviQI	GTAC	3 cut(s)	220, 460, 757
DdeI	CTNAG	8 cut(s)	64, 245, 293, 375, 463, 556, 624, 806
DpnI	GATC	7 cut(s)	47, 62, 98, 242, 399, 491, 588
DpnII	GATC	7 cut(s)	45, 60, 96, 240, 397, 489, 586
EciI	GGCGGA	1 cut(s)	369
Eco130I	CCWWGG	3 cut(s)	442, 455, 854
Eco24I	GRGCYC	2 cut(s)	145, 152
Eco31I	GGTCTC	1 cut(s)	880
Eco47I	GGWCC	2 cut(s)	321, 851
Eco81I	CCTNAGG	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	495
EcoO109I	RGGNCCY	2 cut(s)	206, 321
EcoT14I	CCWWGG	3 cut(s)	442, 455, 854
EcoT38I	GRGCYC	2 cut(s)	145, 152
ErhI	CCWWGG	3 cut(s)	442, 455, 854
FaeI	CATG	4 cut(s)	256, 568, 593, 840
FaqI	GGGAC	2 cut(s)	228, 307
FatI	CATG	4 cut(s)	252, 564, 589, 836
FauI	CCCGC	2 cut(s)	132, 343
FbaI	TGATCA	1 cut(s)	586
FokI	GGATG	1 cut(s)	427
FriOI	GRGCYC	2 cut(s)	145, 152
FspBI	CTAG	2 cut(s)	104, 456
GlaI	GCGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	3 cut(s)	160, 182, 207
HapII	CCGG	7 cut(s)	157, 175, 199, 236, 351, 363, 695
HgaI	GACGC	2 cut(s)	14, 355
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	2 cut(s)	25, 366
Hin1II	CATG	4 cut(s)	256, 568, 593, 840
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HinfI	GANTC	4 cut(s)	134, 357, 724, 825
HpaII	CCGG	7 cut(s)	157, 175, 199, 236, 351, 363, 695
HphI	GGTGA	3 cut(s)	421, 484, 718
Hpy166II	GTNNAC	2 cut(s)	29, 562
Hpy188I	TCNGA	8 cut(s)	96, 187, 296, 618, 625, 733, 807, 920
Hpy8I	GTNNAC	2 cut(s)	29, 562
Hpy99I	CGWCG	4 cut(s)	88, 91, 281, 371
HpyAV	CCTTC	3 cut(s)	197, 497, 794
HpyCH4III	ACNGT	3 cut(s)	219, 776, 790
HpyCH4IV	ACGT	2 cut(s)	89, 702
HpyCH4V	TGCA	4 cut(s)	395, 418, 593, 902
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 204, 279, 392
HpyF3I	CTNAG	8 cut(s)	64, 245, 293, 375, 463, 556, 624, 806
HpySE526I	ACGT	2 cut(s)	89, 702
Hsp92I	GRCGYC	2 cut(s)	25, 366
Hsp92II	CATG	4 cut(s)	256, 568, 593, 840
HspAI	GCGC	1 cut(s)	196
KflI	GGGWCCC	1 cut(s)	321
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	7 cut(s)	45, 60, 96, 240, 397, 489, 586
LmnI	GCTCC	2 cut(s)	123, 129
LweI	GCATC	4 cut(s)	282, 405, 466, 662
MaeI	CTAG	2 cut(s)	104, 456
MaeII	ACGT	2 cut(s)	89, 702
MalI	GATC	7 cut(s)	47, 62, 98, 242, 399, 491, 588
MboI	GATC	7 cut(s)	45, 60, 96, 240, 397, 489, 586
MboII	GAAGA	5 cut(s)	26, 721, 760, 796, 903
MflI	RGATCY	2 cut(s)	45, 397
MhlI	GDGCHC	5 cut(s)	145, 152, 291, 814, 844
MluCI	AATT	4 cut(s)	572, 657, 860, 897
MluI	ACGCGT	1 cut(s)	168
MlyI	GAGTC	2 cut(s)	143, 351
MmeI	TCCRAC	2 cut(s)	490, 711
MnlI	CCTC	9 cut(s)	108, 193, 219, 254, 302, 335, 405, 506, 619
MroXI	GAANNNNTTC	1 cut(s)	824
MseI	TTAA	1 cut(s)	482
MspI	CCGG	7 cut(s)	157, 175, 199, 236, 351, 363, 695
MspR9I	CCNGG	3 cut(s)	157, 176, 200
MvnI	CGCG	2 cut(s)	139, 170
MwoI	GCNNNNNNNGC	4 cut(s)	74, 204, 279, 392
NciI	CCSGG	3 cut(s)	157, 176, 200
NdeII	GATC	7 cut(s)	45, 60, 96, 240, 397, 489, 586
NlaIII	CATG	4 cut(s)	256, 568, 593, 840
NlaIV	GGNNCC	3 cut(s)	119, 322, 323
NspI	RCATGY	1 cut(s)	256
PciI	ACATGT	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	2 cut(s)	92, 282
PdmI	GAANNNNTTC	1 cut(s)	824
PfeI	GAWTC	2 cut(s)	724, 825
Ple19I	CGATCG	1 cut(s)	99
PleI	GAGTC	2 cut(s)	142, 351
PpsI	GAGTC	2 cut(s)	142, 351
PpuMI	RGGWCCY	1 cut(s)	321
PscI	ACATGT	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	321
PspN4I	GGNNCC	3 cut(s)	119, 322, 323
PspPI	GGNCC	4 cut(s)	159, 206, 321, 851
PspPPI	RGGWCCY	1 cut(s)	321
PstI	CTGCAG	1 cut(s)	397
PstNI	CAGNNNCTG	1 cut(s)	680
PsuI	RGATCY	2 cut(s)	45, 397
PvuI	CGATCG	1 cut(s)	99
RsaI	GTAC	3 cut(s)	221, 461, 758
RsaNI	GTAC	3 cut(s)	220, 460, 757
SaqAI	TTAA	1 cut(s)	482
Sau3AI	GATC	7 cut(s)	45, 60, 96, 240, 397, 489, 586
Sau96I	GGNCC	4 cut(s)	159, 206, 321, 851
SchI	GAGTC	2 cut(s)	143, 351
ScrFI	CCNGG	3 cut(s)	157, 176, 200
SduI	GDGCHC	5 cut(s)	145, 152, 291, 814, 844
SfaNI	GCATC	4 cut(s)	282, 405, 466, 662
SfcI	CTRYAG	1 cut(s)	393
SinI	GGWCC	2 cut(s)	321, 851
Sse9I	AATT	4 cut(s)	572, 657, 860, 897
SsiI	CCGC	3 cut(s)	139, 336, 354
SspMI	CTAG	2 cut(s)	104, 456
StyD4I	CCNGG	3 cut(s)	155, 174, 198
StyI	CCWWGG	3 cut(s)	442, 455, 854
TaaI	ACNGT	3 cut(s)	219, 776, 790
TaiI	ACGT	2 cut(s)	92, 705
TaqI	TCGA	4 cut(s)	59, 99, 152, 892
TasI	AATT	4 cut(s)	572, 657, 860, 897
TatI	WGTACW	2 cut(s)	219, 756
TfiI	GAWTC	2 cut(s)	724, 825
Tru1I	TTAA	1 cut(s)	482
Tru9I	TTAA	1 cut(s)	482
TspDTI	ATGAA	3 cut(s)	17, 737, 903
VpaK11BI	GGWCC	2 cut(s)	321, 851
XceI	RCATGY	1 cut(s)	256
XmaJI	CCTAGG	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	824
XspI	CTAG	2 cut(s)	104, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.