Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004540.1

Orthogroup ID

OG0008637

Physical Location & Seq

Genomic Coordinates Forward (+)

82188 .. 83764

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004540.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgtcccgtctcggggctaaagccctctacggcggactctccggcgtcattgctcagttggtggcaagcccggcagatcttgtaaaggtgaggatgcaagcagatggtcgttttgtgagccaaggctttcaacctaggtactcggggtgtttcgatgctttaaacaagatcgcccgagcagaaggtgttggaggactttggaaaggggttttccctaatgttcaaagagctttcttagtaaacatgggagaattagcttgttacgatcatgcaaaacgttttgtaatcaataatcagatttctgaggataatatatatgcccacacattagcatcaatcatgtcgggcctttcggcgactgctttgagctgtccagcagacgtggtaaagacgagaatgatgaatcagtcagaaattaaggaagggaagattatgtacagcagttcttatgattgtcttgtgaagacagtcaaagttgaaggtctgagagctctgtggaaagggttctttcctacatgggcacggcttgggccttggcaatttgagatttctggtgagaatgcgaagcctgaggatgtgaagcctaaggggaggcacaaggggaacaaaggcgaggtgtcaggcccaagtctaacaaaacgtaatggtatgcggcatgggaatttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051881 GO:0055085 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

222

Amino Acids

24.3

Weight (kDa)

9.69

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14140
fragaria_vesca	FvH4_4g31010 FvH4_4g31020
malus_domestica	MD13G1068800.v1.1 MD13G1255700.v1.1 MD16G1069100.v1.1
prunus_persica	Prupe.1G278100_v2.0.a1
pyrus_communis	pycom13g06160
rosa_chinensis	RchiOBHm_Chr4g0439381 RchiOBHm_Chr7g0223901
rosa_laevigata	RLG00000001923 RLG00000006275
rosa_multiflora	Rmu_co8146616.1_g000001 Rmu_sc0002469.1_g000001 Rmu_sc0004540.1_g000015
rosa_roxburghii	Rroxscaffold_3G00235200 Rroxscaffold_5G00380320
rosa_rugosa	Rorug07G0221100
rosa_samantha	Rh4DG375600 Rh7AG363700 Rh7CG382500 Rh7DG358400
rosa_wichuraiana	Rw7G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	33, 652
AclI	AACGTT	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	661
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	140, 437
AfiI	CCNNNNNNNGG	2 cut(s)	12, 13
AgsI	TTSAA	3 cut(s)	131, 224, 479
AjiI	CACGTC	1 cut(s)	382
AluBI	AGCT	4 cut(s)	230, 257, 369, 491
AluI	AGCT	4 cut(s)	230, 257, 369, 491
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	1 cut(s)	14
Ama87I	CYCGRG	3 cut(s)	11, 142, 174
AoxI	GGCC	3 cut(s)	346, 530, 622
ApoI	RAATTY	1 cut(s)	661
Asp700I	GAANNNNTTC	1 cut(s)	503
AspA2I	CCTAGG	1 cut(s)	134
AspS9I	GGNCC	3 cut(s)	346, 530, 623
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	2 cut(s)	100, 566
AvaI	CYCGRG	3 cut(s)	11, 142, 174
AvrII	CCTAGG	1 cut(s)	134
AxyI	CCTNAGG	2 cut(s)	570, 585
BaeGI	GKGCMC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	493
BarI	GAAGNNNNNNTAC	2 cut(s)	419, 451
BbsI	GAAGAC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	493
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	2 cut(s)	46, 539
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	135
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	1 cut(s)	653
BlnI	CCTAGG	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	654
Bme1390I	CCNGG	1 cut(s)	71
BmeT110I	CYCGRG	3 cut(s)	11, 142, 174
BmgBI	CACGTC	1 cut(s)	382
BmgT120I	GGNCC	3 cut(s)	346, 530, 623
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	3 cut(s)	84, 145, 341
BpiI	GAAGAC	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	3 cut(s)	121, 134, 533
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 13
Bse21I	CCTNAGG	2 cut(s)	570, 585
Bse3DI	GCAATG	1 cut(s)	48
BseDI	CCNNGG	3 cut(s)	121, 134, 533
BseGI	GGATG	2 cut(s)	99, 580
BseLI	CCNNNNNNNGG	2 cut(s)	12, 13
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	4 cut(s)	68, 294, 476, 561
BseSI	GKGCMC	1 cut(s)	523
BshFI	GGCC	3 cut(s)	348, 532, 624
BsiHKAI	GWGCWC	1 cut(s)	493
BsiHKCI	CYCGRG	3 cut(s)	11, 142, 174
BsiSI	CCGG	2 cut(s)	42, 71
BslI	CCNNNNNNNGG	2 cut(s)	12, 13
BsmAI	GTCTC	1 cut(s)	14
BsmBI	CGTCTC	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	3 cut(s)	348, 532, 624
BsoBI	CYCGRG	3 cut(s)	11, 142, 174
Bsp1286I	GDGCHC	2 cut(s)	493, 523
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	3 cut(s)	76, 168, 265
BspACI	CCGC	2 cut(s)	33, 652
BspANI	GGCC	3 cut(s)	348, 532, 624
BspCNI	CTCAG	4 cut(s)	67, 295, 477, 562
BsrDI	GCAATG	1 cut(s)	48
BsrGI	TGTACA	1 cut(s)	435
BssECI	CCNNGG	3 cut(s)	121, 134, 533
BssMI	GATC	3 cut(s)	76, 168, 265
BssNI	GRCGYC	1 cut(s)	45
BssT1I	CCWWGG	3 cut(s)	121, 134, 533
Bst4CI	ACNGT	1 cut(s)	469
BstACI	GRCGYC	1 cut(s)	45
BstAUI	TGTACA	1 cut(s)	435
BstC8I	GCNNGC	2 cut(s)	67, 99
BstDEI	CTNAG	6 cut(s)	54, 235, 303, 485, 570, 585
BstF5I	GGATG	2 cut(s)	99, 580
BstKTI	GATC	3 cut(s)	79, 171, 268
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	3 cut(s)	76, 168, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	69
BstSLI	GKGCMC	1 cut(s)	523
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
Bsu36I	CCTNAGG	2 cut(s)	570, 585
BsuRI	GGCC	3 cut(s)	348, 532, 624
BtrI	CACGTC	1 cut(s)	382
BtsCI	GGATG	2 cut(s)	99, 580
Cac8I	GCNNGC	2 cut(s)	67, 99
Cfr13I	GGNCC	3 cut(s)	346, 530, 623
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	139, 436
CviAII	CATG	5 cut(s)	244, 269, 340, 516, 656
CviQI	GTAC	2 cut(s)	139, 436
DdeI	CTNAG	6 cut(s)	54, 235, 303, 485, 570, 585
DpnI	GATC	3 cut(s)	78, 170, 267
DpnII	GATC	3 cut(s)	76, 168, 265
DraI	TTTAAA	1 cut(s)	162
EciI	GGCGGA	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	491
Eco130I	CCWWGG	3 cut(s)	121, 134, 533
Eco24I	GRGCYC	1 cut(s)	493
Eco53kI	GAGCTC	1 cut(s)	491
Eco81I	CCTNAGG	2 cut(s)	570, 585
Eco88I	CYCGRG	3 cut(s)	11, 142, 174
EcoICRI	GAGCTC	1 cut(s)	491
EcoT14I	CCWWGG	3 cut(s)	121, 134, 533
EcoT38I	GRGCYC	1 cut(s)	493
ErhI	CCWWGG	3 cut(s)	121, 134, 533
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	5 cut(s)	247, 272, 343, 519, 659
FatI	CATG	5 cut(s)	243, 268, 339, 515, 655
Fnu4HI	GCNGC	1 cut(s)	653
FokI	GGATG	2 cut(s)	106, 587
FriOI	GRGCYC	1 cut(s)	493
Fsp4HI	GCNGC	1 cut(s)	653
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	1 cut(s)	653
HaeIII	GGCC	3 cut(s)	348, 532, 624
HapII	CCGG	2 cut(s)	42, 71
HgaI	GACGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	5 cut(s)	247, 272, 343, 519, 659
HinfI	GANTC	2 cut(s)	36, 403
HpaII	CCGG	2 cut(s)	42, 71
HphI	GGTGA	2 cut(s)	100, 566
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	4 cut(s)	297, 304, 412, 486
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	3 cut(s)	176, 416, 473
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	3 cut(s)	277, 381, 640
HpyCH4V	TGCA	2 cut(s)	97, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	6 cut(s)	54, 235, 303, 485, 570, 585
HpySE526I	ACGT	3 cut(s)	277, 381, 640
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	5 cut(s)	247, 272, 343, 519, 659
Kzo9I	GATC	3 cut(s)	76, 168, 265
LpnPI	CCDG	6 cut(s)	55, 84, 387, 537, 582, 606
LweI	GCATC	3 cut(s)	84, 145, 341
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	3 cut(s)	277, 381, 640
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	3 cut(s)	78, 170, 267
MboI	GATC	3 cut(s)	76, 168, 265
MboII	GAAGA	2 cut(s)	439, 475
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	2 cut(s)	493, 523
MluCI	AATT	4 cut(s)	251, 414, 539, 661
MlyI	GAGTC	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	7 cut(s)	35, 84, 185, 298, 565, 585, 607
MroXI	GAANNNNTTC	1 cut(s)	503
MseI	TTAA	2 cut(s)	161, 417
MspI	CCGG	2 cut(s)	42, 71
MspR9I	CCNGG	1 cut(s)	71
Mva1269I	GAATGC	1 cut(s)	565
MwoI	GCNNNNNNNGC	1 cut(s)	71
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	3 cut(s)	76, 168, 265
NlaIII	CATG	5 cut(s)	247, 272, 343, 519, 659
PctI	GAATGC	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	503
PfeI	GAWTC	1 cut(s)	403
PkrI	GCNGC	1 cut(s)	654
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	493
Psp1406I	AACGTT	1 cut(s)	277
PspPI	GGNCC	3 cut(s)	346, 530, 623
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	2 cut(s)	140, 437
RsaNI	GTAC	2 cut(s)	139, 436
SacI	GAGCTC	1 cut(s)	493
SaqAI	TTAA	2 cut(s)	161, 417
SatI	GCNGC	1 cut(s)	653
Sau3AI	GATC	3 cut(s)	76, 168, 265
Sau96I	GGNCC	3 cut(s)	346, 530, 623
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	2 cut(s)	493, 523
SfaNI	GCATC	3 cut(s)	84, 145, 341
Sse9I	AATT	4 cut(s)	251, 414, 539, 661
SsiI	CCGC	2 cut(s)	33, 652
SspMI	CTAG	1 cut(s)	135
SstI	GAGCTC	1 cut(s)	493
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	3 cut(s)	121, 134, 533
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	3 cut(s)	280, 384, 643
TaqI	TCGA	1 cut(s)	153
TasI	AATT	4 cut(s)	251, 414, 539, 661
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	1 cut(s)	655
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	2 cut(s)	161, 417
Tru9I	TTAA	2 cut(s)	161, 417
TspDTI	ATGAA	1 cut(s)	416
XapI	RAATTY	1 cut(s)	661
XmaJI	CCTAGG	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	503
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.