Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008637

Physical Location & Seq

Genomic Coordinates Forward (+)

43808786 .. 43810389

Gene Structure 1604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G030870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAAACCGAGCCAAGAGCACGGGCGTCAACACGCCCCCACAAAGATCTTACTGACCTCGATCTCAGCAATGGTGGCCGAAACGACGACGTTTCCAATCGACCTCATGAAGACGAGGCTCCAGCTCCACGGCGAGTCCCGGTCTCTCGGCTCGACCCGGCCCACCAACGCGTTCCGGGTGGCCTCGGAAATCGTGCGCCTGGAAGGCCCTCTGGGACTGTACAAGGGTTTGTCGCCGGCGATTCTCAGGCACCTTTTTTACACGCCTGTTCGTATCGTCGGCTACGAGCACCTCAGAAACTCTTTGAAAACCGATGGTGGGTCCCTCTCTCTCGGGGCTAAAGCCCTCTACGGCGGACTCTCCGGCGTCATTGCTCAGTTGGTGGCAAGCCCGGCTGATCTTGTAAAGGTGAGGATGCAAGCAGATGGTCGTTTTGTGAGCCAAGGCTTTCAACCTAGGTACTCGGGGTGTTTCGATGCTTTAAACAAGATCGCCCGAGCAGAAGGTGTTGGAGGACTTTGGAAAGGGGTTTTCCCTAATGTTCAAAGAGCTTTCTTAGTAAACATGGGAGAATTAGCTTGTTACGATCATGCAAAACGTTTTGTAATCAATAATCAGATTTCTGAGGATAATATATATGCCCACACATTAGCATCAATCATGTCGGGCCTTTCGGCGACTGCTTTGAGCTGTCCAGCAGACGTGGTAAAGACGAGAATGATGAATCAGTCAGAAATTAAGGAAGGGAAGATTATGTACAGCAGTTCTTATGATTGTCTTGTGAAGACAGTCAAAGTTGAAGGTCTGAGAGCTCTGTGGAAAGGGTTCTTTCCTACATGGGCACGGCTTGGGCCTTGGCAATTTGTTTTCTGGGTCTCGTATGAGAAGTTTCGACAAATTGCAGGGTTTTCTTCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051881 GO:0055085 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

306

Amino Acids

33.82

Weight (kDa)

9.74

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	12 - 104	1.6e-18	Mitochondrial carrier protein
Mito_carr	PF00153	109 - 205	1.8e-22	Mitochondrial carrier protein
Mito_carr	PF00153	209 - 300	1.9e-22	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14140
fragaria_vesca	FvH4_4g31010 FvH4_4g31020
malus_domestica	MD13G1068800.v1.1 MD13G1255700.v1.1 MD16G1069100.v1.1
prunus_persica	Prupe.1G278100_v2.0.a1
pyrus_communis	pycom13g06160
rosa_chinensis	RchiOBHm_Chr4g0439381 RchiOBHm_Chr7g0223901
rosa_laevigata	RLG00000001923 RLG00000006275
rosa_multiflora	Rmu_co8146616.1_g000001 Rmu_sc0002469.1_g000001 Rmu_sc0004540.1_g000015
rosa_roxburghii	Rroxscaffold_3G00235200 Rroxscaffold_5G00380320
rosa_rugosa	Rorug07G0221100
rosa_samantha	Rh4DG375600 Rh7AG363700 Rh7CG382500 Rh7DG358400
rosa_wichuraiana	Rw7G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	249
AccII	CGCG	1 cut(s)	170
AciI	CCGC	1 cut(s)	354
AclI	AACGTT	1 cut(s)	598
AcoI	YGGCCR	1 cut(s)	75
AcyI	GRCGYC	2 cut(s)	25, 366
AfaI	GTAC	3 cut(s)	221, 461, 758
AfiI	CCNNNNNNNGG	1 cut(s)	318
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	4 cut(s)	307, 452, 545, 800
AjiI	CACGTC	1 cut(s)	703
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	5 cut(s)	124, 551, 578, 690, 812
AluI	AGCT	5 cut(s)	124, 551, 578, 690, 812
Alw21I	GWGCWC	3 cut(s)	21, 291, 814
Alw26I	GTCTC	2 cut(s)	147, 880
Ama87I	CYCGRG	3 cut(s)	332, 463, 495
AoxI	GGCC	6 cut(s)	75, 158, 180, 205, 667, 851
Asp700I	GAANNNNTTC	1 cut(s)	824
AspA2I	CCTAGG	1 cut(s)	455
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	5 cut(s)	159, 206, 321, 667, 851
AsuC2I	CCSGG	4 cut(s)	139, 157, 176, 392
AsuHPI	GGTGA	1 cut(s)	421
AvaI	CYCGRG	3 cut(s)	332, 463, 495
AvaII	GGWCC	1 cut(s)	321
AvrII	CCTAGG	1 cut(s)	455
BaeGI	GKGCMC	1 cut(s)	844
BanI	GGYRCC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	814
BarI	GAAGNNNNNNTAC	2 cut(s)	740, 772
BbsI	GAAGAC	2 cut(s)	116, 791
Bbv12I	GWGCWC	3 cut(s)	21, 291, 814
BccI	CCATC	2 cut(s)	308, 419
BceAI	ACGGC	3 cut(s)	145, 367, 860
BciT130I	CCWGG	1 cut(s)	200
BcnI	CCSGG	4 cut(s)	139, 157, 176, 392
BcoDI	GTCTC	2 cut(s)	147, 880
BfaI	CTAG	1 cut(s)	456
BglI	GCCNNNNNGGC	1 cut(s)	204
BglII	AGATCT	1 cut(s)	45
BlnI	CCTAGG	1 cut(s)	455
Bme1390I	CCNGG	5 cut(s)	139, 157, 176, 200, 392
Bme18I	GGWCC	1 cut(s)	321
BmeT110I	CYCGRG	3 cut(s)	332, 463, 495
BmgBI	CACGTC	1 cut(s)	703
BmgT120I	GGNCC	5 cut(s)	159, 206, 321, 667, 851
BmiI	GGNNCC	4 cut(s)	119, 251, 322, 323
BmrFI	CCNGG	5 cut(s)	139, 157, 176, 200, 392
BmsI	GCATC	3 cut(s)	405, 466, 662
BpiI	GAAGAC	2 cut(s)	116, 791
BpmI	CTGGAG	1 cut(s)	104
BpuMI	CCSGG	4 cut(s)	139, 157, 176, 392
BsaHI	GRCGYC	2 cut(s)	25, 366
BsaI	GGTCTC	2 cut(s)	147, 880
BsaJI	CCNNGG	5 cut(s)	127, 183, 442, 455, 854
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse118I	RCCGGY	1 cut(s)	235
Bse3DI	GCAATG	2 cut(s)	75, 369
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	5 cut(s)	127, 183, 442, 455, 854
BseGI	GGATG	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMI	GCAATG	2 cut(s)	75, 369
BseMII	CTCAG	6 cut(s)	78, 259, 307, 389, 615, 797
BseSI	GKGCMC	1 cut(s)	844
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	6 cut(s)	77, 160, 182, 207, 669, 853
BshNI	GGYRCC	1 cut(s)	249
BsiHKAI	GWGCWC	3 cut(s)	21, 291, 814
BsiHKCI	CYCGRG	3 cut(s)	332, 463, 495
BsiSI	CCGG	6 cut(s)	139, 157, 175, 236, 363, 392
BslFI	GGGAC	3 cut(s)	121, 228, 307
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmAI	GTCTC	2 cut(s)	147, 880
BsmFI	GGGAC	3 cut(s)	121, 228, 307
BsnI	GGCC	6 cut(s)	77, 160, 182, 207, 669, 853
Bso31I	GGTCTC	2 cut(s)	147, 880
BsoBI	CYCGRG	3 cut(s)	332, 463, 495
Bsp1286I	GDGCHC	4 cut(s)	21, 291, 814, 844
Bsp1407I	TGTACA	2 cut(s)	219, 756
Bsp143I	GATC	5 cut(s)	45, 60, 397, 489, 586
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	6 cut(s)	77, 160, 182, 207, 669, 853
BspCNI	CTCAG	6 cut(s)	77, 258, 306, 388, 616, 798
BspFNI	CGCG	1 cut(s)	170
BspHI	TCATGA	1 cut(s)	105
BspLI	GGNNCC	4 cut(s)	119, 251, 322, 323
BspT107I	GGYRCC	1 cut(s)	249
BspTNI	GGTCTC	2 cut(s)	147, 880
BsrDI	GCAATG	2 cut(s)	75, 369
BsrFI	RCCGGY	1 cut(s)	235
BsrGI	TGTACA	2 cut(s)	219, 756
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	5 cut(s)	127, 183, 442, 455, 854
BssMI	GATC	5 cut(s)	45, 60, 397, 489, 586
BssNI	GRCGYC	2 cut(s)	25, 366
BssT1I	CCWWGG	3 cut(s)	442, 455, 854
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	219, 790
BstACI	GRCGYC	2 cut(s)	25, 366
BstAUI	TGTACA	2 cut(s)	219, 756
BstC8I	GCNNGC	3 cut(s)	237, 388, 420
BstDEI	CTNAG	7 cut(s)	64, 245, 293, 375, 556, 624, 806
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	420
BstFNI	CGCG	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	5 cut(s)	48, 63, 400, 492, 589
BstMAI	GTCTC	2 cut(s)	147, 880
BstMBI	GATC	5 cut(s)	45, 60, 397, 489, 586
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 204, 392
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	5 cut(s)	137, 155, 174, 198, 390
BstSLI	GKGCMC	1 cut(s)	844
BstUI	CGCG	1 cut(s)	170
BstV2I	GAAGAC	2 cut(s)	116, 791
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
BsuRI	GGCC	6 cut(s)	77, 160, 182, 207, 669, 853
BtgI	CCRYGG	1 cut(s)	127
BtrI	CACGTC	1 cut(s)	703
BtsCI	GGATG	1 cut(s)	420
Cac8I	GCNNGC	3 cut(s)	237, 388, 420
CciI	TCATGA	1 cut(s)	105
CfoI	GCGC	1 cut(s)	198
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	5 cut(s)	159, 206, 321, 667, 851
CseI	GACGC	2 cut(s)	14, 355
Csp6I	GTAC	3 cut(s)	220, 460, 757
CviAII	CATG	5 cut(s)	106, 565, 590, 661, 837
CviQI	GTAC	3 cut(s)	220, 460, 757
DdeI	CTNAG	7 cut(s)	64, 245, 293, 375, 556, 624, 806
DpnI	GATC	5 cut(s)	47, 62, 399, 491, 588
DpnII	GATC	5 cut(s)	45, 60, 397, 489, 586
DraI	TTTAAA	1 cut(s)	483
EaeI	YGGCCR	1 cut(s)	75
EciI	GGCGGA	1 cut(s)	369
Ecl136II	GAGCTC	1 cut(s)	812
Eco130I	CCWWGG	3 cut(s)	442, 455, 854
Eco24I	GRGCYC	1 cut(s)	814
Eco31I	GGTCTC	2 cut(s)	147, 880
Eco47I	GGWCC	1 cut(s)	321
Eco53kI	GAGCTC	1 cut(s)	812
Eco88I	CYCGRG	3 cut(s)	332, 463, 495
EcoICRI	GAGCTC	1 cut(s)	812
EcoO109I	RGGNCCY	2 cut(s)	206, 321
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	3 cut(s)	442, 455, 854
EcoT38I	GRGCYC	1 cut(s)	814
ErhI	CCWWGG	3 cut(s)	442, 455, 854
FaeI	CATG	5 cut(s)	109, 568, 593, 664, 840
FaqI	GGGAC	3 cut(s)	121, 228, 307
FatI	CATG	5 cut(s)	105, 564, 589, 660, 836
FokI	GGATG	1 cut(s)	427
FriOI	GRGCYC	1 cut(s)	814
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	6 cut(s)	77, 160, 182, 207, 669, 853
HapII	CCGG	6 cut(s)	139, 157, 175, 236, 363, 392
HgaI	GACGC	2 cut(s)	14, 355
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	2 cut(s)	25, 366
Hin1II	CATG	5 cut(s)	109, 568, 593, 664, 840
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HinfI	GANTC	4 cut(s)	134, 241, 357, 724
HpaII	CCGG	6 cut(s)	139, 157, 175, 236, 363, 392
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	2 cut(s)	29, 562
Hpy188I	TCNGA	7 cut(s)	187, 296, 618, 625, 733, 807, 920
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	2 cut(s)	29, 562
Hpy99I	CGWCG	3 cut(s)	88, 91, 281
HpyAV	CCTTC	4 cut(s)	197, 497, 737, 794
HpyCH4III	ACNGT	2 cut(s)	219, 790
HpyCH4IV	ACGT	3 cut(s)	89, 598, 702
HpyCH4V	TGCA	3 cut(s)	418, 593, 902
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 204, 392
HpyF3I	CTNAG	7 cut(s)	64, 245, 293, 375, 556, 624, 806
HpySE526I	ACGT	3 cut(s)	89, 598, 702
Hsp92I	GRCGYC	2 cut(s)	25, 366
Hsp92II	CATG	5 cut(s)	109, 568, 593, 664, 840
HspAI	GCGC	1 cut(s)	196
KflI	GGGWCCC	1 cut(s)	321
KroI	GCCGGC	1 cut(s)	235
KroNI	GCCGGC	1 cut(s)	237
Kzo9I	GATC	5 cut(s)	45, 60, 397, 489, 586
LmnI	GCTCC	2 cut(s)	123, 129
LweI	GCATC	3 cut(s)	405, 466, 662
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	3 cut(s)	89, 598, 702
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	5 cut(s)	47, 62, 399, 491, 588
MboI	GATC	5 cut(s)	45, 60, 397, 489, 586
MboII	GAAGA	4 cut(s)	121, 760, 796, 903
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	4 cut(s)	21, 291, 814, 844
MluCI	AATT	4 cut(s)	572, 735, 860, 897
MluI	ACGCGT	1 cut(s)	168
MlyI	GAGTC	2 cut(s)	143, 351
MmeI	TCCRAC	1 cut(s)	490
MreI	CGCCGGCG	1 cut(s)	235
MroNI	GCCGGC	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	824
MseI	TTAA	2 cut(s)	482, 738
MspI	CCGG	6 cut(s)	139, 157, 175, 236, 363, 392
MspR9I	CCNGG	5 cut(s)	139, 157, 176, 200, 392
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	3 cut(s)	74, 204, 392
NaeI	GCCGGC	1 cut(s)	237
NciI	CCSGG	4 cut(s)	139, 157, 176, 392
NdeII	GATC	5 cut(s)	45, 60, 397, 489, 586
NgoMIV	GCCGGC	1 cut(s)	235
NlaIII	CATG	5 cut(s)	109, 568, 593, 664, 840
NlaIV	GGNNCC	4 cut(s)	119, 251, 322, 323
NmeAIII	GCCGAG	1 cut(s)	126
PagI	TCATGA	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PdiI	GCCGGC	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	824
PfeI	GAWTC	2 cut(s)	241, 724
PleI	GAGTC	2 cut(s)	142, 351
PpsI	GAGTC	2 cut(s)	142, 351
PpuMI	RGGWCCY	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	814
Psp1406I	AACGTT	1 cut(s)	598
Psp5II	RGGWCCY	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	4 cut(s)	119, 251, 322, 323
PspPI	GGNCC	5 cut(s)	159, 206, 321, 667, 851
PspPPI	RGGWCCY	1 cut(s)	321
PsuI	RGATCY	1 cut(s)	45
RsaI	GTAC	3 cut(s)	221, 461, 758
RsaNI	GTAC	3 cut(s)	220, 460, 757
SacI	GAGCTC	1 cut(s)	814
SaqAI	TTAA	2 cut(s)	482, 738
Sau3AI	GATC	5 cut(s)	45, 60, 397, 489, 586
Sau96I	GGNCC	5 cut(s)	159, 206, 321, 667, 851
SchI	GAGTC	2 cut(s)	143, 351
ScrFI	CCNGG	5 cut(s)	139, 157, 176, 200, 392
SduI	GDGCHC	4 cut(s)	21, 291, 814, 844
SfaNI	GCATC	3 cut(s)	405, 466, 662
SgrAI	CRCCGGYG	1 cut(s)	235
SinI	GGWCC	1 cut(s)	321
Sse9I	AATT	4 cut(s)	572, 735, 860, 897
SsiI	CCGC	1 cut(s)	354
SspMI	CTAG	1 cut(s)	456
SstI	GAGCTC	1 cut(s)	814
StyD4I	CCNGG	5 cut(s)	137, 155, 174, 198, 390
StyI	CCWWGG	3 cut(s)	442, 455, 854
TaaI	ACNGT	2 cut(s)	219, 790
TaiI	ACGT	3 cut(s)	92, 601, 705
TaqI	TCGA	5 cut(s)	59, 99, 152, 474, 892
TasI	AATT	4 cut(s)	572, 735, 860, 897
TatI	WGTACW	2 cut(s)	219, 756
TfiI	GAWTC	2 cut(s)	241, 724
Tru1I	TTAA	2 cut(s)	482, 738
Tru9I	TTAA	2 cut(s)	482, 738
TspDTI	ATGAA	3 cut(s)	17, 122, 737
VpaK11BI	GGWCC	1 cut(s)	321
XmaJI	CCTAGG	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	824
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.